Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004158

Physical Location & Seq

Genomic Coordinates Forward (+)

39118242 .. 39119633

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG288300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGATGTTGGTGGAATTGATGTTACACCAGTTGTTAAGCCTATCCGGGAACCACAAGTTGTTGTTCAAACTCTGAGTGCAGTTGATATATTGGATGATGGATACCGCTGGCGCAAATATGGTCAGAAAGTTGTGAGGGAAATCCCAATGCAAGGACCAAGCTCCACATCTTCTTCTCCGTCTCCGGCACCAAGGATCTCCAGATTGCGAACCTCACTCTTAGGGTTCTCTATCACCCCGAGGAGCTATTACAAGTGCACAAATGCCGGATGCCCTGTTAGAAAGCATGTGGAGAGGGCATCCCATGATCCAAAATCAGTTATAACTACATATGAGGGAAAACATAATCATGATGTAATGATGTCCCAAGTGCAAGGACTAGTAGCCATGACACTTTGGGACCAACAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009891 GO:0009893 GO:0009961 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043200 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

137

Amino Acids

15.25

Weight (kDa)

9.43

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	79 - 118	1.3e-15	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640
fragaria_vesca	FvH4_3g24010 FvH4_3g24010
malus_domestica	MD03G1188900.v1.1 MD11G1205000.v1.1
prunus_persica	Prupe.4G232600_v2.0.a1 Prupe.4G232600_v2.0.a1 Prupe.4G232600_v2.0.a1
pyrus_communis	pycom03g14170 pycom11g17770
rosa_chinensis	RchiOBHm_Chr5g0042581 RchiOBHm_Chr5g0042601
rosa_laevigata	RLG00000034142
rosa_multiflora	Rmu_sc0004704.1_g000005 Rmu_sc0004704.1_g000010 Rmu_sc0012301.1_g000004 Rmu_sc0012301.1_g000009
rosa_roxburghii	Rroxscaffold_1G00038060
rosa_rugosa	Rorug05G0202900 Rorug05G0203000 Rorug05G0203100
rosa_samantha	Rh5AG287900 Rh5AG288300 Rh5BG292300 Rh5CG324700 Rh5DG302100
rosa_wichuraiana	Rw5G026730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	187
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	2 cut(s)	203, 302
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	68
AhlI	ACTAGT	1 cut(s)	379
AluBI	AGCT	2 cut(s)	162, 246
AluI	AGCT	2 cut(s)	162, 246
Alw21I	GWGCWC	1 cut(s)	260
Alw26I	GTCTC	1 cut(s)	186
Alw44I	GTGCAC	1 cut(s)	256
AlwI	GGATC	2 cut(s)	203, 302
Ama87I	CYCGRG	1 cut(s)	238
ApaLI	GTGCAC	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	2 cut(s)	155, 400
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	238
AvaII	GGWCC	2 cut(s)	155, 400
BaeGI	GKGCMC	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	260
BccI	CCATC	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	95
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	186
BcuI	ACTAGT	1 cut(s)	379
BfaI	CTAG	1 cut(s)	380
BfuI	GTATCC	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	2 cut(s)	155, 400
BmeT110I	CYCGRG	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	155, 400
BmiI	GGNNCC	3 cut(s)	51, 189, 401
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	2 cut(s)	260, 308
BpmI	CTGGAG	1 cut(s)	184
BpuMI	CCSGG	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	191, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	191, 239
BseGI	GGATG	4 cut(s)	10, 100, 275, 299
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	256
BseSI	GKGCMC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	260
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	3 cut(s)	46, 185, 267
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	186
BsmBI	CGTCTC	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	349
BsoBI	CYCGRG	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	195, 307
BspACI	CCGC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	3 cut(s)	51, 189, 401
BspPI	GGATC	2 cut(s)	203, 302
BspT107I	GGYRCC	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	191, 239
BssMI	GATC	2 cut(s)	195, 307
BssT1I	CCWWGG	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	74, 220
BstF5I	GGATG	4 cut(s)	10, 100, 275, 299
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	2 cut(s)	198, 310
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	2 cut(s)	195, 307
BstNSI	RCATGY	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	45
BstSLI	GKGCMC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	95
BtsCI	GGATG	4 cut(s)	10, 100, 275, 299
Cac8I	GCNNGC	1 cut(s)	110
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	155, 400
CviAII	CATG	4 cut(s)	287, 305, 350, 388
CviJI	RGCY	4 cut(s)	40, 162, 246, 386
CviKI_1	RGCY	4 cut(s)	40, 162, 246, 386
DdeI	CTNAG	2 cut(s)	74, 220
DpnI	GATC	2 cut(s)	197, 309
DpnII	GATC	2 cut(s)	195, 307
Eco130I	CCWWGG	1 cut(s)	191
Eco47I	GGWCC	2 cut(s)	155, 400
Eco88I	CYCGRG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	191
Esp3I	CGTCTC	1 cut(s)	186
FaeI	CATG	4 cut(s)	290, 308, 353, 391
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	4 cut(s)	286, 304, 349, 387
FauNDI	CATATG	1 cut(s)	331
FokI	GGATG	4 cut(s)	17, 107, 282, 286
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	1 cut(s)	113
GsuI	CTGGAG	1 cut(s)	184
HapII	CCGG	3 cut(s)	46, 185, 267
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	4 cut(s)	290, 308, 353, 391
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HpaII	CCGG	3 cut(s)	46, 185, 267
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	2 cut(s)	75, 126
Hpy188III	TCNNGA	2 cut(s)	201, 350
Hpy8I	GTNNAC	1 cut(s)	258
HpyCH4V	TGCA	4 cut(s)	80, 151, 258, 373
HpyF3I	CTNAG	2 cut(s)	74, 220
Hsp92II	CATG	4 cut(s)	290, 308, 353, 391
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	195, 307
LmnI	GCTCC	2 cut(s)	167, 243
LpnPI	CCDG	7 cut(s)	42, 59, 94, 198, 214, 280, 288
LweI	GCATC	2 cut(s)	260, 308
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	2 cut(s)	197, 309
MboI	GATC	2 cut(s)	195, 307
MboII	GAAGA	2 cut(s)	162, 165
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	1 cut(s)	15
MnlI	CCTC	5 cut(s)	129, 223, 234, 288, 328
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	108
MspI	CCGG	3 cut(s)	46, 185, 267
MspR9I	CCNGG	1 cut(s)	47
NciI	CCSGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	2 cut(s)	195, 307
NlaIII	CATG	4 cut(s)	290, 308, 353, 391
NlaIV	GGNNCC	3 cut(s)	51, 189, 401
NspI	RCATGY	1 cut(s)	290
PagI	TCATGA	1 cut(s)	349
PfoI	TCCNGGA	1 cut(s)	45
PsiI	TTATAA	1 cut(s)	323
PspN4I	GGNNCC	3 cut(s)	51, 189, 401
PspPI	GGNCC	2 cut(s)	155, 400
PsuI	RGATCY	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	36
Sau3AI	GATC	2 cut(s)	195, 307
Sau96I	GGNCC	2 cut(s)	155, 400
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	4 cut(s)	164, 215, 248, 412
SfaNI	GCATC	2 cut(s)	260, 308
SinI	GGWCC	2 cut(s)	155, 400
SmiMI	CAYNNNNRTG	1 cut(s)	348
SpeI	ACTAGT	1 cut(s)	379
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	191
TasI	AATT	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	168
VneI	GTGCAC	1 cut(s)	256
VpaK11BI	GGWCC	2 cut(s)	155, 400
XceI	RCATGY	1 cut(s)	290
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.