Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004704.1

Orthogroup ID

OG0004158

Physical Location & Seq

Genomic Coordinates Forward (+)

45652 .. 47299

Gene Structure 1648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004704.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggatgttggtggaattgatgttacaccagttgttaagcctatccgggaaccacaagttgttgttcatactccgagtgaggttgatatattggatgatggataccgctggcgcaaatatggtcagaaagttgtgaggggaaatcctaatccaagcgcaaggactagtagccatgacactttgggaccaacaaccttgaatgccccttcgaggattagagcagatgaaaatgacaccataagccttgatcttggtgttggaatgagctctacttctgaaaatagatccaacaatcacctgcgattgcactctgaactagcagaaagacaaactcaccctagtttcaattttaaggctgttcaaactacccctgctccgtcatactatggtgttttaaatagtggcatgaatcagtatggatctagagaaaatccaagtgaatcacgtagcatcgagattccacctttaaaccattcttcttacccatatccacagaccatgggaagagtactaacaggtccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009891 GO:0009893 GO:0009961 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043200 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

174

Amino Acids

19.17

Weight (kDa)

6.59

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640
fragaria_vesca	FvH4_3g24010 FvH4_3g24010
malus_domestica	MD03G1188900.v1.1 MD11G1205000.v1.1
prunus_persica	Prupe.4G232600_v2.0.a1 Prupe.4G232600_v2.0.a1 Prupe.4G232600_v2.0.a1
pyrus_communis	pycom03g14170 pycom11g17770
rosa_chinensis	RchiOBHm_Chr5g0042581 RchiOBHm_Chr5g0042601
rosa_laevigata	RLG00000034142
rosa_multiflora	Rmu_sc0004704.1_g000005 Rmu_sc0004704.1_g000010 Rmu_sc0012301.1_g000004 Rmu_sc0012301.1_g000009
rosa_roxburghii	Rroxscaffold_1G00038060
rosa_rugosa	Rorug05G0202900 Rorug05G0203000 Rorug05G0203100
rosa_samantha	Rh5AG287900 Rh5AG288300 Rh5BG292300 Rh5CG324700 Rh5DG302100
rosa_wichuraiana	Rw5G026730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	306
Acc36I	ACCTGC	1 cut(s)	306
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	2 cut(s)	279, 427
AfaI	GTAC	1 cut(s)	510
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	3 cut(s)	199, 346, 362
AhlI	ACTAGT	1 cut(s)	164
AluBI	AGCT	1 cut(s)	267
AluI	AGCT	1 cut(s)	267
Alw21I	GWGCWC	1 cut(s)	269
AlwI	GGATC	2 cut(s)	279, 427
AspLEI	GCGC	2 cut(s)	114, 158
AspS9I	GGNCC	2 cut(s)	185, 518
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	287, 326
AvaII	GGWCC	2 cut(s)	185, 518
BanII	GRGCYC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	269
BccI	CCATC	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	95
BcnI	CCSGG	1 cut(s)	47
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	4 cut(s)	165, 317, 339, 423
BfuAI	ACCTGC	1 cut(s)	306
BfuI	GTATCC	1 cut(s)	95
BmcAI	AGTACT	1 cut(s)	510
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	2 cut(s)	185, 518
BmgT120I	GGNCC	2 cut(s)	185, 518
BmiI	GGNNCC	2 cut(s)	51, 186
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	459
BpuMI	CCSGG	1 cut(s)	47
BsaAI	YACGTR	1 cut(s)	446
BsaJI	CCNNGG	1 cut(s)	498
BsaXI	ACNNNNNCTCC	2 cut(s)	358, 388
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse1I	ACTGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	2 cut(s)	10, 100
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp143I	GATC	3 cut(s)	247, 284, 419
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	51, 186
BspMI	ACCTGC	1 cut(s)	306
BspPI	GGATC	2 cut(s)	279, 427
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	3 cut(s)	247, 284, 419
BssT1I	CCWWGG	1 cut(s)	498
Bst6I	CTCTTC	1 cut(s)	499
BstBAI	YACGTR	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	110
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	2 cut(s)	10, 100
BstHHI	GCGC	2 cut(s)	114, 158
BstKTI	GATC	3 cut(s)	250, 287, 422
BstMBI	GATC	3 cut(s)	247, 284, 419
BstSCI	CCNGG	1 cut(s)	45
BstX2I	RGATCY	2 cut(s)	284, 419
BstYI	RGATCY	2 cut(s)	284, 419
BsuI	GTATCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	498
BtsCI	GGATG	2 cut(s)	10, 100
BveI	ACCTGC	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	110
CfoI	GCGC	2 cut(s)	114, 158
Cfr13I	GGNCC	2 cut(s)	185, 518
Csp6I	GTAC	1 cut(s)	509
CviAII	CATG	3 cut(s)	173, 406, 499
CviJI	RGCY	5 cut(s)	40, 171, 243, 267, 356
CviKI_1	RGCY	5 cut(s)	40, 171, 243, 267, 356
CviQI	GTAC	1 cut(s)	509
DpnI	GATC	3 cut(s)	249, 286, 421
DpnII	GATC	3 cut(s)	247, 284, 419
DraI	TTTAAA	2 cut(s)	396, 468
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
Ecl136II	GAGCTC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	269
Eco47I	GGWCC	2 cut(s)	185, 518
Eco53kI	GAGCTC	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	3 cut(s)	176, 409, 502
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	3 cut(s)	172, 405, 498
FokI	GGATG	2 cut(s)	17, 107
FriOI	GRGCYC	1 cut(s)	269
FspBI	CTAG	4 cut(s)	165, 317, 339, 423
GlaI	GCGC	2 cut(s)	113, 157
HapII	CCGG	1 cut(s)	46
HhaI	GCGC	2 cut(s)	114, 158
Hin1II	CATG	3 cut(s)	176, 409, 502
Hin6I	GCGC	2 cut(s)	112, 156
HinP1I	GCGC	2 cut(s)	112, 156
HinfI	GANTC	3 cut(s)	409, 440, 457
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	2 cut(s)	287, 326
Hpy188I	TCNGA	4 cut(s)	75, 126, 277, 313
Hpy188III	TCNNGA	2 cut(s)	423, 454
HpyAV	CCTTC	1 cut(s)	216
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	1 cut(s)	307
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	3 cut(s)	176, 409, 502
HspAI	GCGC	2 cut(s)	112, 156
Kzo9I	GATC	3 cut(s)	247, 284, 419
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	6 cut(s)	42, 59, 94, 311, 384, 501
LweI	GCATC	1 cut(s)	459
MaeI	CTAG	4 cut(s)	165, 317, 339, 423
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	3 cut(s)	249, 286, 421
MboI	GATC	3 cut(s)	247, 284, 419
MboII	GAAGA	2 cut(s)	468, 516
MflI	RGATCY	2 cut(s)	284, 419
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	2 cut(s)	15, 346
MmeI	TCCRAC	2 cut(s)	238, 312
MnlI	CCTC	3 cut(s)	73, 129, 204
MseI	TTAA	4 cut(s)	36, 351, 395, 467
MspA1I	CMGCKG	1 cut(s)	108
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	205
NciI	CCSGG	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	498
NdeII	GATC	3 cut(s)	247, 284, 419
NlaIII	CATG	3 cut(s)	176, 409, 502
NlaIV	GGNNCC	2 cut(s)	51, 186
PaqCI	CACCTGC	1 cut(s)	306
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	3 cut(s)	409, 440, 457
PfoI	TCCNGGA	1 cut(s)	45
Ppu21I	YACGTR	1 cut(s)	446
Psp124BI	GAGCTC	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	51, 186
PspPI	GGNCC	2 cut(s)	185, 518
PsuI	RGATCY	2 cut(s)	284, 419
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
SacI	GAGCTC	1 cut(s)	269
SaqAI	TTAA	4 cut(s)	36, 351, 395, 467
Sau3AI	GATC	3 cut(s)	247, 284, 419
Sau96I	GGNCC	2 cut(s)	185, 518
ScaI	AGTACT	1 cut(s)	510
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	7 cut(s)	84, 197, 269, 300, 448, 466, 520
SfaNI	GCATC	1 cut(s)	459
SinI	GGWCC	2 cut(s)	185, 518
SpeI	ACTAGT	1 cut(s)	164
Sse9I	AATT	2 cut(s)	15, 346
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	4 cut(s)	165, 317, 339, 423
SstI	GAGCTC	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	498
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	2 cut(s)	209, 453
TasI	AATT	2 cut(s)	15, 346
TatI	WGTACW	1 cut(s)	508
TfiI	GAWTC	3 cut(s)	409, 440, 457
Tru1I	TTAA	4 cut(s)	36, 351, 395, 467
Tru9I	TTAA	4 cut(s)	36, 351, 395, 467
TspDTI	ATGAA	3 cut(s)	56, 240, 422
TspGWI	ACGGA	1 cut(s)	366
VpaK11BI	GGWCC	2 cut(s)	185, 518
XbaI	TCTAGA	1 cut(s)	422
XspI	CTAG	4 cut(s)	165, 317, 339, 423
ZrmI	AGTACT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.