Rmu_sc0012301.1_g000009
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012301.1
Physical Location & Seq
Reverse (-)
39878 .. 42397
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012301.1_g000009.1.cds

Sequence Viewer

Length: 1386 bp
atgtgttttaagatactggcagaagttactacggattatgaccgccagagcaatgagcaggctgtgcaagtccaaggtcaaggtcaaggtcagtctcaatcacttgcgtcaccacctttggttaagagtgagatggcaggctcctcaaatcaatcaggattaccagctcctgttcatatggtctcgtcaggagctagtgcacctgttgaaggtgatgcggatgatataagtcagagggcaaatccaaattctggtgtccaaacatcacagtttgatcataaaggaagtgggccttcagtatcttctgatgatggctataactggcgaaaatatggacaaaagcatgttaaaggaagtgaatttcctcgcagttattacaaatgcacacatcccaactgtgaagtgaagaaactgtttgagcgatctcatgagggacatataacagagattatctacaagggtacacatgatcaccctaagcctcaacctagtcgacgatataataccggtgctatgatgaatgtccaggaagaaagatctgacaaggctttatctttgactggccgagatgacaagtcatctagtatgtatgggcaaatgtcttgtaccaatgagccaaatagtactccggagctatcccctgtcagaggaaatgatggtagtgttgaaggaactggctcactatcaactagaatactcgatgaggttgatgatgatgacccattctctaaaaggaggaggatggatgttggtggaattgatgttacaccagttgttaagcctatccgggaaccacgagttgttgttcaaactctgagtgaggttgatatattggatgatggataccgctggcgcaaatatggtcagaaagttgtgaggggaaatcctaatccaaggagctattacaagtgcacaaatgcgggatgccctgttaggaagcatgtggagagggcatcccatgatccaaaagcagttataactacatatgagggaaaacataatcatgatgtcccaaccgcaaggactagtagccatgacacttcgggaccaacaaccgtgaatgccccttcgaggattagaacagaggaaaatgacaccataagccttgatcttggtgttggaatgagctctgctactgaaaatagatccaacaatcacctgcgattgcactctgaactagcagaaagacaaactcaccctagttccaattttaaggctgttcaaactacccctgctccgtcatactatggtgttttaaatagtggcatgaatcagtatggatctagagaaaatccaagtgaatcacgtagcatcgagattccacctttaaaccattcttcttacccatatccacagaacatgggaagagtactaacaggtccatag

Protein Analysis

461

Amino Acids

50.72

Weight (kDa)

6.79

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 977
AarI CACCTGC 1 cut(s) 1167
Acc36I ACCTGC 1 cut(s) 1167
AccB7I CCANNNNNTGG 1 cut(s) 251
AccI GTMKAC 1 cut(s) 493
AccIII TCCGGA 1 cut(s) 628
AciI CCGC 5 cut(s) 43, 218, 847, 920, 1017
AclWI GGATC 3 cut(s) 956, 1140, 1288
AcoI YGGCCR 1 cut(s) 562
AcsI RAATTY 2 cut(s) 247, 359
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 4 cut(s) 463, 607, 625, 1371
AfiI CCNNNNNNNGG 4 cut(s) 209, 251, 647, 1071
AgeI ACCGGT 1 cut(s) 506
AgsI TTSAA 4 cut(s) 209, 668, 809, 1223
AhlI ACTAGT 1 cut(s) 1025
AjnI CCWGG 1 cut(s) 525
AluBI AGCT 5 cut(s) 167, 194, 634, 900, 1128
AluI AGCT 5 cut(s) 167, 194, 634, 900, 1128
Alw21I GWGCWC 3 cut(s) 202, 914, 1130
Alw26I GTCTC 2 cut(s) 99, 187
Alw44I GTGCAC 2 cut(s) 198, 910
AlwI GGATC 3 cut(s) 956, 1140, 1288
AlwNI CAGNNNCTG 1 cut(s) 170
Aor13HI TCCGGA 1 cut(s) 628
AoxI GGCC 2 cut(s) 290, 562
ApaLI GTGCAC 2 cut(s) 198, 910
ApoI RAATTY 2 cut(s) 247, 359
AsiGI ACCGGT 1 cut(s) 506
AspLEI GCGC 1 cut(s) 855
AspS9I GGNCC 3 cut(s) 290, 1046, 1379
AsuC2I CCSGG 1 cut(s) 788
AsuHPI GGTGA 5 cut(s) 102, 224, 464, 1148, 1187
AvaII GGWCC 2 cut(s) 1046, 1379
BaeGI GKGCMC 2 cut(s) 202, 914
BanII GRGCYC 1 cut(s) 1130
BauI CACGAG 1 cut(s) 795
Bbv12I GWGCWC 3 cut(s) 202, 914, 1130
BccI CCATC 5 cut(s) 127, 305, 650, 736, 833
BciT130I CCWGG 1 cut(s) 527
BciVI GTATCC 1 cut(s) 836
BclI TGATCA 2 cut(s) 274, 469
BcnI CCSGG 1 cut(s) 788
BcoDI GTCTC 2 cut(s) 99, 187
BcuI ACTAGT 1 cut(s) 1025
BfaI CTAG 8 cut(s) 195, 489, 582, 690, 1026, 1178, 1200, 1284
BfuAI ACCTGC 1 cut(s) 1167
BfuI GTATCC 1 cut(s) 836
BglII AGATCT 1 cut(s) 536
BmcAI AGTACT 2 cut(s) 625, 1371
Bme1390I CCNGG 2 cut(s) 527, 788
Bme18I GGWCC 2 cut(s) 1046, 1379
BmgT120I GGNCC 3 cut(s) 290, 1046, 1379
BmiI GGNNCC 3 cut(s) 142, 792, 1047
BmrFI CCNGG 2 cut(s) 527, 788
BmsI GCATC 4 cut(s) 205, 914, 962, 1320
Bpu10I CCTNAGC 1 cut(s) 477
BpuMI CCSGG 1 cut(s) 788
BsaAI YACGTR 1 cut(s) 1307
BsaI GGTCTC 1 cut(s) 187
BsaJI CCNNGG 2 cut(s) 73, 893
BsaWI WCCGGW 2 cut(s) 506, 628
BsaXI ACNNNNNCTCC 2 cut(s) 1219, 1249
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 251, 647, 1071
Bse118I RCCGGY 1 cut(s) 506
Bse1I ACTGG 5 cut(s) 21, 326, 565, 679, 770
Bse3DI GCAATG 1 cut(s) 58
BseAI TCCGGA 1 cut(s) 628
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 2 cut(s) 73, 893
BseGI GGATG 7 cut(s) 226, 388, 747, 751, 841, 929, 953
BseLI CCNNNNNNNGG 4 cut(s) 209, 251, 647, 1071
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 806
BseNI ACTGG 5 cut(s) 21, 326, 565, 679, 770
BseRI GAGGAG 2 cut(s) 133, 751
BseSI GKGCMC 2 cut(s) 202, 914
BshFI GGCC 2 cut(s) 292, 564
BshTI ACCGGT 1 cut(s) 506
BsiHKAI GWGCWC 3 cut(s) 202, 914, 1130
BsiSI CCGG 3 cut(s) 507, 629, 787
BslFI GGGAC 3 cut(s) 447, 995, 1059
BslI CCNNNNNNNGG 4 cut(s) 209, 251, 647, 1071
BsmAI GTCTC 2 cut(s) 99, 187
BsmFI GGGAC 3 cut(s) 447, 995, 1059
BsmI GAATGC 1 cut(s) 1066
BsnI GGCC 2 cut(s) 292, 564
Bso31I GGTCTC 1 cut(s) 187
Bsp1286I GDGCHC 3 cut(s) 202, 914, 1130
Bsp13I TCCGGA 1 cut(s) 628
Bsp143I GATC 8 cut(s) 274, 422, 469, 536, 961, 1108, 1145, 1280
BspACI CCGC 5 cut(s) 43, 218, 847, 920, 1017
BspANI GGCC 2 cut(s) 292, 564
BspCNI CTCAG 1 cut(s) 807
BspEI TCCGGA 1 cut(s) 628
BspHI TCATGA 2 cut(s) 427, 1003
BspLI GGNNCC 3 cut(s) 142, 792, 1047
BspMI ACCTGC 1 cut(s) 1167
BspPI GGATC 3 cut(s) 956, 1140, 1288
BspTNI GGTCTC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 506
BsrI ACTGG 5 cut(s) 21, 326, 565, 679, 770
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 2 cut(s) 73, 893
BssMI GATC 8 cut(s) 274, 422, 469, 536, 961, 1108, 1145, 1280
BssSI CACGAG 1 cut(s) 795
BssT1I CCWWGG 2 cut(s) 73, 893
Bst2BI CACGAG 1 cut(s) 795
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 4 cut(s) 270, 398, 414, 1057
Bst6I CTCTTC 1 cut(s) 1360
BstAPI GCANNNNNTGC 1 cut(s) 64
BstBAI YACGTR 1 cut(s) 1307
BstC8I GCNNGC 3 cut(s) 60, 139, 851
BstDEI CTNAG 2 cut(s) 477, 815
BstENI CCTNNNNNAGG 2 cut(s) 207, 645
BstF5I GGATG 7 cut(s) 226, 388, 747, 751, 841, 929, 953
BstHHI GCGC 1 cut(s) 855
BstKTI GATC 8 cut(s) 277, 425, 472, 539, 964, 1111, 1148, 1283
BstMAI GTCTC 2 cut(s) 99, 187
BstMBI GATC 8 cut(s) 274, 422, 469, 536, 961, 1108, 1145, 1280
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 527
BstNSI RCATGY 2 cut(s) 347, 944
BstSCI CCNGG 2 cut(s) 525, 786
BstSLI GKGCMC 2 cut(s) 202, 914
BstX2I RGATCY 3 cut(s) 536, 1145, 1280
BstYI RGATCY 3 cut(s) 536, 1145, 1280
BsuI GTATCC 1 cut(s) 836
BsuRI GGCC 2 cut(s) 292, 564
BtsCI GGATG 7 cut(s) 226, 388, 747, 751, 841, 929, 953
BveI ACCTGC 1 cut(s) 1167
Cac8I GCNNGC 3 cut(s) 60, 139, 851
CaiI CAGNNNCTG 1 cut(s) 170
CciI TCATGA 2 cut(s) 427, 1003
CfoI GCGC 1 cut(s) 855
Cfr10I RCCGGY 1 cut(s) 506
Cfr13I GGNCC 3 cut(s) 290, 1046, 1379
CseI GACGC 1 cut(s) 96
Csp6I GTAC 4 cut(s) 462, 606, 624, 1370
CspAI ACCGGT 1 cut(s) 506
CviAII CATG 9 cut(s) 344, 428, 467, 941, 959, 1004, 1034, 1267, 1360
CviQI GTAC 4 cut(s) 462, 606, 624, 1370
DdeI CTNAG 2 cut(s) 477, 815
DpnI GATC 8 cut(s) 276, 424, 471, 538, 963, 1110, 1147, 1282
DpnII GATC 8 cut(s) 274, 422, 469, 536, 961, 1108, 1145, 1280
DraI TTTAAA 2 cut(s) 1257, 1329
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 1 cut(s) 1360
EarI CTCTTC 1 cut(s) 1360
Ecl136II GAGCTC 1 cut(s) 1128
Eco130I CCWWGG 2 cut(s) 73, 893
Eco24I GRGCYC 1 cut(s) 1130
Eco31I GGTCTC 1 cut(s) 187
Eco47I GGWCC 2 cut(s) 1046, 1379
Eco53kI GAGCTC 1 cut(s) 1128
Eco57I CTGAAG 1 cut(s) 279
EcoICRI GAGCTC 1 cut(s) 1128
EcoNI CCTNNNNNAGG 2 cut(s) 207, 645
EcoRII CCWGG 1 cut(s) 525
EcoT14I CCWWGG 2 cut(s) 73, 893
EcoT38I GRGCYC 1 cut(s) 1130
ErhI CCWWGG 2 cut(s) 73, 893
FaeI CATG 9 cut(s) 347, 431, 470, 944, 962, 1007, 1037, 1270, 1363
FalI AAGNNNNNCTT 2 cut(s) 277, 309
FaqI GGGAC 3 cut(s) 447, 995, 1059
FatI CATG 9 cut(s) 343, 427, 466, 940, 958, 1003, 1033, 1266, 1359
FauI CCCGC 1 cut(s) 913
FauNDI CATATG 2 cut(s) 177, 985
FbaI TGATCA 2 cut(s) 274, 469
FblI GTMKAC 1 cut(s) 493
FokI GGATG 7 cut(s) 233, 375, 754, 758, 848, 936, 940
FriOI GRGCYC 1 cut(s) 1130
FspBI CTAG 8 cut(s) 195, 489, 582, 690, 1026, 1178, 1200, 1284
GlaI GCGC 1 cut(s) 854
HaeIII GGCC 2 cut(s) 292, 564
HapII CCGG 3 cut(s) 507, 629, 787
HgaI GACGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 855
Hin1II CATG 9 cut(s) 347, 431, 470, 944, 962, 1007, 1037, 1270, 1363
Hin6I GCGC 1 cut(s) 853
HinP1I GCGC 1 cut(s) 853
HincII GTYRAC 1 cut(s) 494
HindII GTYRAC 1 cut(s) 494
HinfI GANTC 3 cut(s) 1270, 1301, 1318
HpaII CCGG 3 cut(s) 507, 629, 787
HphI GGTGA 5 cut(s) 102, 224, 464, 1148, 1187
Hpy166II GTNNAC 4 cut(s) 200, 464, 494, 912
Hpy188I TCNGA 7 cut(s) 234, 307, 541, 647, 816, 867, 1174
Hpy188III TCNNGA 8 cut(s) 156, 189, 428, 629, 1004, 1044, 1284, 1315
Hpy8I GTNNAC 4 cut(s) 200, 464, 494, 912
Hpy99I CGWCG 1 cut(s) 498
HpyAV CCTTC 4 cut(s) 203, 303, 662, 1077
HpyCH4III ACNGT 4 cut(s) 270, 398, 414, 1057
HpyCH4IV ACGT 1 cut(s) 1306
HpyCH4V TGCA 5 cut(s) 67, 200, 384, 912, 1168
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 2 cut(s) 477, 815
HpySE526I ACGT 1 cut(s) 1306
Hsp92II CATG 9 cut(s) 347, 431, 470, 944, 962, 1007, 1037, 1270, 1363
HspAI GCGC 1 cut(s) 853
Kpn2I TCCGGA 1 cut(s) 628
Ksp22I TGATCA 2 cut(s) 274, 469
Kzo9I GATC 8 cut(s) 274, 422, 469, 536, 961, 1108, 1145, 1280
LmnI GCTCC 6 cut(s) 146, 172, 191, 631, 897, 1240
LweI GCATC 4 cut(s) 205, 914, 962, 1320
MaeI CTAG 8 cut(s) 195, 489, 582, 690, 1026, 1178, 1200, 1284
MaeII ACGT 1 cut(s) 1306
MaeIII GTNAC 3 cut(s) 25, 108, 763
MalI GATC 8 cut(s) 276, 424, 471, 538, 963, 1110, 1147, 1282
MboI GATC 8 cut(s) 274, 422, 469, 536, 961, 1108, 1145, 1280
MboII GAAGA 5 cut(s) 294, 418, 542, 1329, 1377
MflI RGATCY 3 cut(s) 536, 1145, 1280
MhlI GDGCHC 3 cut(s) 202, 914, 1130
MluCI AATT 4 cut(s) 247, 359, 756, 1207
MmeI TCCRAC 2 cut(s) 1099, 1173
MroI TCCGGA 1 cut(s) 628
MseI TTAA 7 cut(s) 9, 123, 348, 777, 1212, 1256, 1328
MslI CAYNNNNRTG 1 cut(s) 1002
MspA1I CMGCKG 1 cut(s) 849
MspI CCGG 3 cut(s) 507, 629, 787
MspR9I CCNGG 2 cut(s) 527, 788
Mva1269I GAATGC 1 cut(s) 1066
MvaI CCWGG 1 cut(s) 527
MwoI GCNNNNNNNGC 1 cut(s) 64
NciI CCSGG 1 cut(s) 788
NdeI CATATG 2 cut(s) 177, 985
NdeII GATC 8 cut(s) 274, 422, 469, 536, 961, 1108, 1145, 1280
NlaIII CATG 9 cut(s) 347, 431, 470, 944, 962, 1007, 1037, 1270, 1363
NlaIV GGNNCC 3 cut(s) 142, 792, 1047
NmeAIII GCCGAG 1 cut(s) 590
NmuCI GTSAC 1 cut(s) 108
NspI RCATGY 2 cut(s) 347, 944
PagI TCATGA 2 cut(s) 427, 1003
PaqCI CACCTGC 1 cut(s) 1167
PctI GAATGC 1 cut(s) 1066
PfeI GAWTC 3 cut(s) 1270, 1301, 1318
PflMI CCANNNNNTGG 1 cut(s) 251
PfoI TCCNGGA 2 cut(s) 525, 786
PinAI ACCGGT 1 cut(s) 506
Ppu21I YACGTR 1 cut(s) 1307
PsiI TTATAA 1 cut(s) 977
Psp124BI GAGCTC 1 cut(s) 1130
Psp6I CCWGG 1 cut(s) 525
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 3 cut(s) 142, 792, 1047
PspPI GGNCC 3 cut(s) 290, 1046, 1379
PstNI CAGNNNCTG 1 cut(s) 170
PsuI RGATCY 3 cut(s) 536, 1145, 1280
RsaI GTAC 4 cut(s) 463, 607, 625, 1371
RsaNI GTAC 4 cut(s) 462, 606, 624, 1370
RseI CAYNNNNRTG 1 cut(s) 1002
SacI GAGCTC 1 cut(s) 1130
SalI GTCGAC 1 cut(s) 492
SaqAI TTAA 7 cut(s) 9, 123, 348, 777, 1212, 1256, 1328
Sau3AI GATC 8 cut(s) 274, 422, 469, 536, 961, 1108, 1145, 1280
Sau96I GGNCC 3 cut(s) 290, 1046, 1379
ScaI AGTACT 2 cut(s) 625, 1371
ScrFI CCNGG 2 cut(s) 527, 788
SduI GDGCHC 3 cut(s) 202, 914, 1130
SfaNI GCATC 4 cut(s) 205, 914, 962, 1320
SinI GGWCC 2 cut(s) 1046, 1379
SmiMI CAYNNNNRTG 1 cut(s) 1002
SpeI ACTAGT 1 cut(s) 1025
Sse9I AATT 4 cut(s) 247, 359, 756, 1207
SsiI CCGC 5 cut(s) 43, 218, 847, 920, 1017
SspMI CTAG 8 cut(s) 195, 489, 582, 690, 1026, 1178, 1200, 1284
SstI GAGCTC 1 cut(s) 1130
StyD4I CCNGG 2 cut(s) 525, 786
StyI CCWWGG 2 cut(s) 73, 893
TaaI ACNGT 4 cut(s) 270, 398, 414, 1057
TaiI ACGT 1 cut(s) 1309
TaqI TCGA 4 cut(s) 493, 699, 1070, 1314
TasI AATT 4 cut(s) 247, 359, 756, 1207
TatI WGTACW 2 cut(s) 623, 1369
TfiI GAWTC 3 cut(s) 1270, 1301, 1318
Tru1I TTAA 7 cut(s) 9, 123, 348, 777, 1212, 1256, 1328
Tru9I TTAA 7 cut(s) 9, 123, 348, 777, 1212, 1256, 1328
TseFI GTSAC 1 cut(s) 108
Tsp45I GTSAC 1 cut(s) 108
TspDTI ATGAA 3 cut(s) 164, 533, 1283
TspGWI ACGGA 2 cut(s) 47, 1227
Van91I CCANNNNNTGG 1 cut(s) 251
VneI GTGCAC 2 cut(s) 198, 910
VpaK11BI GGWCC 2 cut(s) 1046, 1379
XagI CCTNNNNNAGG 2 cut(s) 207, 645
XapI RAATTY 2 cut(s) 247, 359
XbaI TCTAGA 1 cut(s) 1283
XceI RCATGY 2 cut(s) 347, 944
XmiI GTMKAC 1 cut(s) 493
XspI CTAG 8 cut(s) 195, 489, 582, 690, 1026, 1178, 1200, 1284
ZrmI AGTACT 2 cut(s) 625, 1371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.