Rorug05G0203000
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
20189707 .. 20192524
2818 bp
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UTR
Exon/CDS
Intron
Rorug05G0203000.1

Sequence Viewer

Length: 1572 bp
ATGAAAGTTTCATTAGGGAAAGCGCCGAAGGCTCTTCTTCTCTTCCTCCTAAACAAAGGCCGAGCTGATCACACCCTACTGTTCACTGACACTATTATTTTTCTGGGTGACCTCACAAGAGCATCAGGACAAATGAATTCGAAATCAAAGCGTCAGTTGAGAGTTCCAGATAGGATCAGTGGGTTACCAGATGCACTTCTTTGGCACATACTTTCGTTTGTTGAAACACAAGATGCTGTGAGGACCTGTGTTCTGTCTACAAGATGGAAGAACATATGGGCGTCTGTTCCCACCTTAGATTTTGACCAGACAAGTTTTCATGACCCTGATAAATTTTGGGCATTTGTTGATTATGTACTTCTCTTCCGTCACTCATCAAACATCAAAAAATTTCGGCTTTATATGAAGGGCAAGGATGTGGACCACTCTCGTATTAATGCTTGGATCAACACTGCCATTAGGCGCAACGTTGTTGAACTTGATCTCTTAGCTGGGCATCCATTTCTATCCAAGCTTGTTGAGTTGCCTAAAAGCCTCTTCATGTGTAAAACACTGGTAATCTTGAGGTTGAGATCACAATTTATTACCAATATTCCTGCATCAGGGTGTTTCCCGAGTCTGAAGTTCCTCCATGTTACATTTTATTCAAATGTTATTGAATCAATGCGTCAGCTTTTCTCCAACTGTCCGATACTTGAAGATTTGACTGTGGATGGTCTTCTTCTATACGGTGTTTCCTTGAATTTAAACATTTCTGTCCCTTCACTGAAGACGTTAAGAATATGGTTTGATAAAGATGGTGATGATAATGGTGCCAGCAGCTATTTTATTAATTGCCCAAAGCTTGAAAATCTTGATGTGACAGAGGAGTTTTCGTCAACATATTGTTGGGGGAAAGCAAAATCCCTAGTCAAAGCCAGTATTTGTCTACCTCAGCATTGTTCAAATGGACAGCCTAGTTTTTACCGTGTGAAATCACTTTTGGCAGGAATATCCAGTGTTACAGATTTATGTCTTTCAGCTCATTGTTTTGAGGTTGGTTCTCTGCCTGCTTATGAAAATTTGAGACGGTTGAAGCTGGTGATTCAAGATTGCTTTTGCTGGGAGTTGCTTACAAAGTTACTCAAAAGATCACCTATCCTGGAGTCTCTTGTCTTAGAATGTGAAGTCGACGGTTGTCCTCAAGAAGACTCTGATAATGACGAAGGATCACTGTATGAAGAAGACTCCGAGAGTGAAGAGGGCTCTGAGCATGAAGAGGGTTCAGAGAATGAACGAAGGTCAGATCATGAAGAAGGCTCAGTGAATGAACAAGGGTCAGAGCATCAATGGAATCCTCCAGATTGTGTGCCTAAATGTTGTTTGTTACACCTCAAGATTGTCTCCATAAGGGGATTCATGGGAGAACGTGATGAGTTGGAAGTGGCAAAGTACTTGCTGAAGTATGGTCAAGTTTTGAATAAGATGACTATATCTATGGATCATCTTGATGTTAATGAAAAAGAGAAGATTTACAAGGAGTTTTTAATGGTTCCAAGGGGTTCAAGAACTAGTATAGTTGAATTTATCTAG

Protein Analysis

523

Amino Acids

59.51

Weight (kDa)

5.84

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 59 - 97 2.2e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 123 - 392 5.1e-08 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 146 - 291 1.7e-12 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 447 - 491 4.2e-15 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 812
AccI GTMKAC 3 cut(s) 257, 928, 1170
AclI AACGTT 1 cut(s) 468
AclWI GGATC 4 cut(s) 182, 452, 1216, 1488
AcsI RAATTY 6 cut(s) 136, 332, 389, 742, 1060, 1562
AcuI CTGAAG 3 cut(s) 641, 788, 1460
AcyI GRCGYC 1 cut(s) 281
AfaI GTAC 2 cut(s) 357, 1433
AfiI CCNNNNNNNGG 1 cut(s) 602
AhlI ACTAGT 1 cut(s) 1550
AjnI CCWGG 1 cut(s) 1140
AjuI GAANNNNNNNTTGG 2 cut(s) 965, 997
AluBI AGCT 8 cut(s) 65, 491, 514, 673, 822, 844, 1022, 1078
AluI AGCT 8 cut(s) 65, 491, 514, 673, 822, 844, 1022, 1078
Alw26I GTCTC 3 cut(s) 1060, 1152, 1387
AlwI GGATC 4 cut(s) 182, 452, 1216, 1488
Ama87I CYCGRG 1 cut(s) 613
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 819
ApoI RAATTY 6 cut(s) 136, 332, 389, 742, 1060, 1562
AseI ATTAAT 2 cut(s) 435, 831
AspLEI GCGC 2 cut(s) 25, 465
AspS9I GGNCC 2 cut(s) 243, 421
AsuHPI GGTGA 4 cut(s) 119, 812, 1093, 1125
AsuII TTCGAA 1 cut(s) 140
AvaI CYCGRG 1 cut(s) 613
AvaII GGWCC 2 cut(s) 243, 421
BanI GGYRCC 1 cut(s) 812
BanII GRGCYC 1 cut(s) 1247
BbsI GAAGAC 4 cut(s) 710, 776, 1194, 1230
BbvCI CCTCAGC 1 cut(s) 933
BbvI GCAGC 1 cut(s) 831
BccI CCATC 3 cut(s) 258, 707, 791
BciT130I CCWGG 1 cut(s) 1142
BclI TGATCA 1 cut(s) 67
BcoDI GTCTC 3 cut(s) 1060, 1152, 1387
BcuI ACTAGT 1 cut(s) 1550
BfaI CTAG 4 cut(s) 908, 957, 1551, 1570
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 1 cut(s) 820
BlsI GCNGC 1 cut(s) 821
BmcAI AGTACT 1 cut(s) 1433
Bme1390I CCNGG 1 cut(s) 1142
Bme18I GGWCC 2 cut(s) 243, 421
BmeT110I CYCGRG 1 cut(s) 613
BmgT120I GGNCC 2 cut(s) 243, 421
BmiI GGNNCC 2 cut(s) 814, 1533
BmrFI CCNGG 1 cut(s) 1142
BmsI GCATC 6 cut(s) 131, 181, 223, 505, 608, 1333
BoxI GACNNNNGTC 1 cut(s) 1176
BpiI GAAGAC 4 cut(s) 710, 776, 1194, 1230
BpmI CTGGAG 2 cut(s) 1163, 1323
Bpu10I CCTNAGC 1 cut(s) 933
Bpu14I TTCGAA 1 cut(s) 140
BpuEI CTTGAG 3 cut(s) 583, 1167, 1358
BsaHI GRCGYC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 1535
BsaXI ACNNNNNCTCC 2 cut(s) 860, 890
Bsc4I CCNNNNNNNGG 1 cut(s) 602
Bse1I ACTGG 3 cut(s) 558, 918, 996
BseBI CCWGG 1 cut(s) 1142
BseDI CCNNGG 1 cut(s) 1535
BseGI GGATG 3 cut(s) 421, 496, 718
BseLI CCNNNNNNNGG 1 cut(s) 602
BseMII CTCAG 3 cut(s) 947, 1239, 1314
BseNI ACTGG 3 cut(s) 558, 918, 996
BseRI GAGGAG 1 cut(s) 881
BseXI GCAGC 1 cut(s) 831
BseYI CCCAGC 2 cut(s) 491, 1101
BshFI GGCC 1 cut(s) 60
BshNI GGYRCC 1 cut(s) 812
BsiHKCI CYCGRG 1 cut(s) 613
BslFI GGGAC 1 cut(s) 743
BslI CCNNNNNNNGG 1 cut(s) 602
BsmAI GTCTC 3 cut(s) 1060, 1152, 1387
BsmBI CGTCTC 1 cut(s) 1060
BsmFI GGGAC 1 cut(s) 743
BsnI GGCC 1 cut(s) 60
BsoBI CYCGRG 1 cut(s) 613
Bsp119I TTCGAA 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 1247
Bsp143I GATC 9 cut(s) 67, 174, 444, 481, 572, 1130, 1208, 1285, 1480
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 3 cut(s) 946, 1240, 1313
BspHI TCATGA 2 cut(s) 319, 1288
BspLI GGNNCC 2 cut(s) 814, 1533
BspPI GGATC 4 cut(s) 182, 452, 1216, 1488
BspQI GCTCTTC 1 cut(s) 39
BspT104I TTCGAA 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 812
BsrI ACTGG 3 cut(s) 558, 918, 996
BssECI CCNNGG 1 cut(s) 1535
BssMI GATC 9 cut(s) 67, 174, 444, 481, 572, 1130, 1208, 1285, 1480
BssNI GRCGYC 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 1535
Bst2UI CCWGG 1 cut(s) 1142
Bst4CI ACNGT 8 cut(s) 81, 686, 709, 731, 968, 1071, 1175, 1215
Bst6I CTCTTC 6 cut(s) 39, 47, 368, 542, 1233, 1251
BstACI GRCGYC 1 cut(s) 281
BstBI TTCGAA 1 cut(s) 140
BstC8I GCNNGC 2 cut(s) 817, 1050
BstDEI CTNAG 6 cut(s) 295, 487, 933, 1156, 1248, 1300
BstEII GGTNACC 2 cut(s) 107, 183
BstENI CCTNNNNNAGG 1 cut(s) 600
BstF5I GGATG 3 cut(s) 421, 496, 718
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 2 cut(s) 25, 465
BstKTI GATC 9 cut(s) 70, 177, 447, 484, 575, 1133, 1211, 1288, 1483
BstMAI GTCTC 3 cut(s) 1060, 1152, 1387
BstMBI GATC 9 cut(s) 67, 174, 444, 481, 572, 1130, 1208, 1285, 1480
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 1142
BstPAI GACNNNNGTC 1 cut(s) 1176
BstPI GGTNACC 2 cut(s) 107, 183
BstSCI CCNGG 1 cut(s) 1140
BstV1I GCAGC 1 cut(s) 831
BstV2I GAAGAC 4 cut(s) 710, 776, 1194, 1230
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 3 cut(s) 421, 496, 718
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 8 cut(s) 84, 184, 450, 551, 764, 1003, 1211, 1308
Cac8I GCNNGC 2 cut(s) 817, 1050
CciI TCATGA 2 cut(s) 319, 1288
CfoI GCGC 2 cut(s) 25, 465
Cfr13I GGNCC 2 cut(s) 243, 421
CseI GACGC 3 cut(s) 140, 270, 656
Csp6I GTAC 2 cut(s) 356, 1432
CviAII CATG 6 cut(s) 320, 541, 632, 1253, 1289, 1399
CviQI GTAC 2 cut(s) 356, 1432
DdeI CTNAG 6 cut(s) 295, 487, 933, 1156, 1248, 1300
DpnI GATC 9 cut(s) 69, 176, 446, 483, 574, 1132, 1210, 1287, 1482
DpnII GATC 9 cut(s) 67, 174, 444, 481, 572, 1130, 1208, 1285, 1480
DraI TTTAAA 1 cut(s) 747
Eam1104I CTCTTC 6 cut(s) 39, 47, 368, 542, 1233, 1251
EarI CTCTTC 6 cut(s) 39, 47, 368, 542, 1233, 1251
Eco130I CCWWGG 1 cut(s) 1535
Eco24I GRGCYC 1 cut(s) 1247
Eco47I GGWCC 2 cut(s) 243, 421
Eco57I CTGAAG 3 cut(s) 641, 788, 1460
Eco88I CYCGRG 1 cut(s) 613
Eco91I GGTNACC 2 cut(s) 107, 183
EcoNI CCTNNNNNAGG 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 243
EcoO65I GGTNACC 2 cut(s) 107, 183
EcoRI GAATTC 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 1140
EcoT14I CCWWGG 1 cut(s) 1535
EcoT38I GRGCYC 1 cut(s) 1247
ErhI CCWWGG 1 cut(s) 1535
Esp3I CGTCTC 1 cut(s) 1060
FaeI CATG 6 cut(s) 323, 544, 635, 1256, 1292, 1402
FaqI GGGAC 1 cut(s) 743
FatI CATG 6 cut(s) 319, 540, 631, 1252, 1288, 1398
FauNDI CATATG 1 cut(s) 275
FbaI TGATCA 1 cut(s) 67
FblI GTMKAC 3 cut(s) 257, 928, 1170
Fnu4HI GCNGC 1 cut(s) 820
FokI GGATG 3 cut(s) 428, 483, 725
FriOI GRGCYC 1 cut(s) 1247
Fsp4HI GCNGC 1 cut(s) 820
FspBI CTAG 4 cut(s) 908, 957, 1551, 1570
GlaI GCGC 2 cut(s) 24, 464
GluI GCNGC 1 cut(s) 820
GsaI CCCAGC 2 cut(s) 495, 1105
GsuI CTGGAG 2 cut(s) 1163, 1323
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 1 cut(s) 60
HgaI GACGC 3 cut(s) 140, 270, 656
HhaI GCGC 2 cut(s) 25, 465
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 6 cut(s) 323, 544, 635, 1256, 1292, 1402
Hin6I GCGC 2 cut(s) 23, 463
HinP1I GCGC 2 cut(s) 23, 463
HincII GTYRAC 2 cut(s) 879, 1171
HindII GTYRAC 2 cut(s) 879, 1171
HindIII AAGCTT 2 cut(s) 512, 842
HinfI GANTC 8 cut(s) 616, 659, 1084, 1145, 1190, 1226, 1333, 1395
HphI GGTGA 4 cut(s) 119, 812, 1093, 1125
Hpy166II GTNNAC 6 cut(s) 84, 258, 421, 879, 929, 1171
Hpy188I TCNGA 8 cut(s) 621, 690, 1195, 1231, 1249, 1267, 1285, 1321
Hpy8I GTNNAC 6 cut(s) 84, 258, 421, 879, 929, 1171
Hpy99I CGWCG 1 cut(s) 1175
HpyAV CCTTC 6 cut(s) 22, 400, 771, 1199, 1272, 1289
HpyCH4III ACNGT 8 cut(s) 81, 686, 709, 731, 968, 1071, 1175, 1215
HpyCH4IV ACGT 3 cut(s) 468, 773, 1408
HpyCH4V TGCA 2 cut(s) 194, 599
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 6 cut(s) 295, 487, 933, 1156, 1248, 1300
HpySE526I ACGT 3 cut(s) 468, 773, 1408
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 6 cut(s) 323, 544, 635, 1256, 1292, 1402
HspAI GCGC 2 cut(s) 23, 463
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 9 cut(s) 67, 174, 444, 481, 572, 1130, 1208, 1285, 1480
LguI GCTCTTC 1 cut(s) 39
Lsp1109I GCAGC 1 cut(s) 831
LweI GCATC 6 cut(s) 131, 181, 223, 505, 608, 1333
MaeI CTAG 4 cut(s) 908, 957, 1551, 1570
MaeII ACGT 3 cut(s) 468, 773, 1408
MaeIII GTNAC 8 cut(s) 107, 183, 368, 634, 859, 1000, 1119, 1365
MalI GATC 9 cut(s) 69, 176, 446, 483, 574, 1132, 1210, 1287, 1482
MboI GATC 9 cut(s) 67, 174, 444, 481, 572, 1130, 1208, 1285, 1480
MhlI GDGCHC 1 cut(s) 1247
MluCI AATT 8 cut(s) 136, 332, 389, 578, 742, 832, 1060, 1562
MlyI GAGTC 4 cut(s) 625, 1154, 1184, 1220
MmeI TCCRAC 2 cut(s) 705, 1398
MseI TTAA 6 cut(s) 435, 746, 776, 831, 1494, 1526
MslI CAYNNNNRTG 2 cut(s) 604, 1488
MspR9I CCNGG 1 cut(s) 1142
MvaI CCWGG 1 cut(s) 1142
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeI CATATG 1 cut(s) 275
NdeII GATC 9 cut(s) 67, 174, 444, 481, 572, 1130, 1208, 1285, 1480
NlaIII CATG 6 cut(s) 323, 544, 635, 1256, 1292, 1402
NlaIV GGNNCC 2 cut(s) 814, 1533
NmeAIII GCCGAG 1 cut(s) 86
NmuCI GTSAC 3 cut(s) 107, 368, 859
NspV TTCGAA 1 cut(s) 140
PagI TCATGA 2 cut(s) 319, 1288
PciSI GCTCTTC 1 cut(s) 39
PfeI GAWTC 4 cut(s) 659, 1084, 1333, 1395
PfoI TCCNGGA 1 cut(s) 1140
PkrI GCNGC 1 cut(s) 821
PleI GAGTC 4 cut(s) 624, 1153, 1184, 1220
PpsI GAGTC 4 cut(s) 624, 1153, 1184, 1220
PpuMI RGGWCCY 1 cut(s) 243
PshAI GACNNNNGTC 1 cut(s) 1176
PshBI ATTAAT 2 cut(s) 435, 831
Psp1406I AACGTT 1 cut(s) 468
Psp5II RGGWCCY 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 1140
PspEI GGTNACC 2 cut(s) 107, 183
PspFI CCCAGC 2 cut(s) 491, 1101
PspGI CCWGG 1 cut(s) 1140
PspN4I GGNNCC 2 cut(s) 814, 1533
PspPI GGNCC 2 cut(s) 243, 421
PspPPI RGGWCCY 1 cut(s) 243
RsaI GTAC 2 cut(s) 357, 1433
RsaNI GTAC 2 cut(s) 356, 1432
RseI CAYNNNNRTG 2 cut(s) 604, 1488
SalI GTCGAC 1 cut(s) 1169
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 6 cut(s) 435, 746, 776, 831, 1494, 1526
SatI GCNGC 1 cut(s) 820
Sau3AI GATC 9 cut(s) 67, 174, 444, 481, 572, 1130, 1208, 1285, 1480
Sau96I GGNCC 2 cut(s) 243, 421
ScaI AGTACT 1 cut(s) 1433
SchI GAGTC 4 cut(s) 625, 1154, 1184, 1220
ScrFI CCNGG 1 cut(s) 1142
SduI GDGCHC 1 cut(s) 1247
SfaNI GCATC 6 cut(s) 131, 181, 223, 505, 608, 1333
SfuI TTCGAA 1 cut(s) 140
SinI GGWCC 2 cut(s) 243, 421
SmiMI CAYNNNNRTG 2 cut(s) 604, 1488
SmlI CTYRAG 3 cut(s) 562, 1182, 1373
SmoI CTYRAG 3 cut(s) 562, 1182, 1373
SpeI ACTAGT 1 cut(s) 1550
Sse9I AATT 8 cut(s) 136, 332, 389, 578, 742, 832, 1060, 1562
SspI AATATT 1 cut(s) 592
SspMI CTAG 4 cut(s) 908, 957, 1551, 1570
StyD4I CCNGG 1 cut(s) 1140
StyI CCWWGG 1 cut(s) 1535
TaaI ACNGT 8 cut(s) 81, 686, 709, 731, 968, 1071, 1175, 1215
TaiI ACGT 3 cut(s) 471, 776, 1411
TaqI TCGA 2 cut(s) 140, 1170
TasI AATT 8 cut(s) 136, 332, 389, 578, 742, 832, 1060, 1562
TatI WGTACW 2 cut(s) 355, 1431
TfiI GAWTC 4 cut(s) 659, 1084, 1333, 1395
Tru1I TTAA 6 cut(s) 435, 746, 776, 831, 1494, 1526
Tru9I TTAA 6 cut(s) 435, 746, 776, 831, 1494, 1526
TscAI CASTG 8 cut(s) 91, 184, 457, 558, 771, 1003, 1218, 1308
TseFI GTSAC 3 cut(s) 107, 368, 859
TseI GCWGC 1 cut(s) 819
Tsp45I GTSAC 3 cut(s) 107, 368, 859
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 8 cut(s) 91, 184, 457, 558, 771, 1003, 1218, 1308
VpaK11BI GGWCC 2 cut(s) 243, 421
VspI ATTAAT 2 cut(s) 435, 831
XagI CCTNNNNNAGG 1 cut(s) 600
XapI RAATTY 6 cut(s) 136, 332, 389, 742, 1060, 1562
XmiI GTMKAC 3 cut(s) 257, 928, 1170
XspI CTAG 4 cut(s) 908, 957, 1551, 1570
ZrmI AGTACT 1 cut(s) 1433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.