Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004158

Physical Location & Seq

Genomic Coordinates Forward (+)

20199703 .. 20200710

Gene Structure 1008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0203100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAGTTGGATTCTAAGAGACAAGCAATAGCTGAAGATAGGATCAGTGCATTACCAGATGCAATTCTATGTCACATACTTTCCTACTTTGAACCGGAATATAGAAAATGTGCTGTCCGAACCTGCATTTTGTCCAAAAGGTGGAAGAACATATGGCCTTATGTTCTCAATCTCTACTTAAACTATGAAGATTTCTCCTCCTCTGCTGATTTTATAGCGTTTGTTGACCGTGCACTTCTCATTCGTGACTCATTATCCATTCAAAAGTTTCATCTTCATTTCAACGGTTGTCAAGCTGAGGATTTCCCACGCATTGATAGTTGGATTCGCAGTGCCATCAGGTGTAAGGTTATAGAACTATATCTTTCTGTTGATTCAGATAGAGAAGATATGTTTGAGTTGCCTGAAAGCCTTTTGACTTGCGAAACACTCATGGTTTGGAAGCTCTGGTCAAATTACATTATCAAAATTCCTAAAGCAGGGTGTTACCCAAGTCTCAAGTCTTTAGATGTTGAGTTTATGTATCCTAGTCTCTTCAATCCAGATAATGATGTGATGGATTTTTCTCAGTTCCCTGCCCTTGAATATTTGAGGATCAATGGATATCTTGGAATCAGAAGTTTTAATTTCATCATTTCTGTGCCTGAATTGAAGACGTTAAGGATAAGTCTCTCCCAGGAAAATGGTCGTTATAATGTACACAATTTTTATATTAATGCCCCACAGCTTGAAAGGCTTGATGTCCAGGAGGACTTTTTGTCAAATTATGTCTTCGTGAATACAACATCCCTAGTGGAGGCCAATATTCATTCCTCTGTGAAACGTGCAAGAAAGTTTCTGGCTGGAATTTCCAGTGTTAAATGTCTGACTATTTCATCTTCTTTCTCTATGTCCGGCTACATTAAGGACGTCCTTAGTTTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009891 GO:0009893 GO:0009961 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0043200 GO:0043565 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

308

Amino Acids

35.74

Weight (kDa)

5.81

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	86 - 294	3.7e-06	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	105 - 254	3.8e-06	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640 AT4G26640
fragaria_vesca	FvH4_3g24010 FvH4_3g24010
malus_domestica	MD03G1188900.v1.1 MD11G1205000.v1.1
prunus_persica	Prupe.4G232600_v2.0.a1 Prupe.4G232600_v2.0.a1 Prupe.4G232600_v2.0.a1
pyrus_communis	pycom03g14170 pycom11g17770
rosa_chinensis	RchiOBHm_Chr5g0042581 RchiOBHm_Chr5g0042601
rosa_laevigata	RLG00000034142
rosa_multiflora	Rmu_sc0004704.1_g000005 Rmu_sc0004704.1_g000010 Rmu_sc0012301.1_g000004 Rmu_sc0012301.1_g000009
rosa_roxburghii	Rroxscaffold_1G00038060
rosa_rugosa	Rorug05G0202900 Rorug05G0203000 Rorug05G0203100
rosa_samantha	Rh5AG287900 Rh5AG288300 Rh5BG292300 Rh5CG324700 Rh5DG302100
rosa_wichuraiana	Rw5G026730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
AatII	GACGTC	1 cut(s)	912
Acc36I	ACCTGC	1 cut(s)	131
AccB7I	CCANNNNNTGG	1 cut(s)	141
AclWI	GGATC	2 cut(s)	50, 602
AcsI	RAATTY	2 cut(s)	468, 846
AcuI	CTGAAG	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	909
AfaI	GTAC	1 cut(s)	699
AfiI	CCNNNNNNNGG	3 cut(s)	141, 479, 796
AgsI	TTSAA	7 cut(s)	92, 263, 283, 538, 584, 652, 731
AhdI	GACNNNNNGTC	1 cut(s)	757
AjnI	CCWGG	2 cut(s)	675, 744
AluBI	AGCT	4 cut(s)	32, 296, 445, 727
AluI	AGCT	4 cut(s)	32, 296, 445, 727
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	4 cut(s)	13, 500, 536, 674
Alw44I	GTGCAC	1 cut(s)	231
AlwI	GGATC	2 cut(s)	50, 602
AoxI	GGCC	2 cut(s)	155, 798
ApaLI	GTGCAC	1 cut(s)	231
ApoI	RAATTY	2 cut(s)	468, 846
AseI	ATTAAT	1 cut(s)	714
BaeGI	GKGCMC	1 cut(s)	235
BbsI	GAAGAC	2 cut(s)	659, 763
Bbv12I	GWGCWC	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	297
BccI	CCATC	2 cut(s)	344, 550
BciT130I	CCWGG	2 cut(s)	677, 746
BciVI	GTATCC	1 cut(s)	534
BcoDI	GTCTC	4 cut(s)	13, 500, 536, 674
BfaI	CTAG	2 cut(s)	528, 791
BfuAI	ACCTGC	1 cut(s)	131
BfuI	GTATCC	1 cut(s)	534
Bme1390I	CCNGG	2 cut(s)	677, 746
BmeRI	GACNNNNNGTC	1 cut(s)	757
BmrFI	CCNGG	2 cut(s)	677, 746
BmsI	GCATC	1 cut(s)	49
BpiI	GAAGAC	2 cut(s)	659, 763
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	482
BsaHI	GRCGYC	1 cut(s)	909
BsaJI	CCNNGG	1 cut(s)	675
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 479, 796
Bse1I	ACTGG	1 cut(s)	852
BseBI	CCWGG	2 cut(s)	677, 746
BseDI	CCNNGG	1 cut(s)	675
BseGI	GGATG	1 cut(s)	785
BseLI	CCNNNNNNNGG	3 cut(s)	141, 479, 796
BseMII	CTCAG	2 cut(s)	288, 581
BseNI	ACTGG	1 cut(s)	852
BseRI	GAGGAG	2 cut(s)	187, 190
BseSI	GKGCMC	1 cut(s)	235
BshFI	GGCC	2 cut(s)	157, 800
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	95, 894
BslI	CCNNNNNNNGG	3 cut(s)	141, 479, 796
BsmAI	GTCTC	4 cut(s)	13, 500, 536, 674
BsnI	GGCC	2 cut(s)	157, 800
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp1407I	TGTACA	1 cut(s)	697
Bsp143I	GATC	2 cut(s)	42, 594
BspANI	GGCC	2 cut(s)	157, 800
BspCNI	CTCAG	2 cut(s)	289, 580
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	2 cut(s)	50, 602
BsrGI	TGTACA	1 cut(s)	697
BsrI	ACTGG	1 cut(s)	852
BssECI	CCNNGG	1 cut(s)	675
BssMI	GATC	2 cut(s)	42, 594
BssNI	GRCGYC	1 cut(s)	909
Bst2UI	CCWGG	2 cut(s)	677, 746
Bst4CI	ACNGT	2 cut(s)	230, 287
Bst6I	CTCTTC	1 cut(s)	539
BstACI	GRCGYC	1 cut(s)	909
BstAUI	TGTACA	1 cut(s)	697
BstDEI	CTNAG	5 cut(s)	15, 297, 567, 914, 924
BstENI	CCTNNNNNAGG	2 cut(s)	477, 794
BstF5I	GGATG	1 cut(s)	785
BstKTI	GATC	2 cut(s)	45, 597
BstMAI	GTCTC	4 cut(s)	13, 500, 536, 674
BstMBI	GATC	2 cut(s)	42, 594
BstMWI	GCNNNNNNNGC	1 cut(s)	733
BstNI	CCWGG	2 cut(s)	677, 746
BstSCI	CCNGG	2 cut(s)	675, 744
BstSLI	GKGCMC	1 cut(s)	235
BstV2I	GAAGAC	2 cut(s)	659, 763
BstXI	CCANNNNNNTGG	1 cut(s)	683
BsuI	GTATCC	1 cut(s)	534
BsuRI	GGCC	2 cut(s)	157, 800
BtsCI	GGATG	1 cut(s)	785
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	3 cut(s)	52, 337, 859
BveI	ACCTGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	698
CviAII	CATG	1 cut(s)	433
CviQI	GTAC	1 cut(s)	698
DdeI	CTNAG	5 cut(s)	15, 297, 567, 914, 924
DpnI	GATC	2 cut(s)	44, 596
DpnII	GATC	2 cut(s)	42, 594
DriI	GACNNNNNGTC	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	539
Eam1105I	GACNNNNNGTC	1 cut(s)	757
EarI	CTCTTC	1 cut(s)	539
Eco32I	GATATC	1 cut(s)	605
Eco57I	CTGAAG	1 cut(s)	54
EcoNI	CCTNNNNNAGG	2 cut(s)	477, 794
EcoRII	CCWGG	2 cut(s)	675, 744
EcoRV	GATATC	1 cut(s)	605
FaeI	CATG	1 cut(s)	436
FatI	CATG	1 cut(s)	432
FauNDI	CATATG	1 cut(s)	152
FokI	GGATG	1 cut(s)	772
FspBI	CTAG	2 cut(s)	528, 791
HaeIII	GGCC	2 cut(s)	157, 800
HapII	CCGG	2 cut(s)	95, 894
Hin1I	GRCGYC	1 cut(s)	909
Hin1II	CATG	1 cut(s)	436
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	5 cut(s)	11, 248, 325, 374, 612
HpaII	CCGG	2 cut(s)	95, 894
Hpy166II	GTNNAC	3 cut(s)	226, 233, 700
Hpy188I	TCNGA	4 cut(s)	119, 379, 617, 867
Hpy188III	TCNNGA	3 cut(s)	245, 542, 775
Hpy8I	GTNNAC	3 cut(s)	226, 233, 700
HpyCH4III	ACNGT	2 cut(s)	230, 287
HpyCH4IV	ACGT	3 cut(s)	656, 823, 909
HpyCH4V	TGCA	5 cut(s)	50, 62, 126, 233, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	733
HpyF3I	CTNAG	5 cut(s)	15, 297, 567, 914, 924
HpySE526I	ACGT	3 cut(s)	656, 823, 909
Hsp92I	GRCGYC	1 cut(s)	909
Hsp92II	CATG	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	42, 594
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	528, 791
MaeII	ACGT	3 cut(s)	656, 823, 909
MaeIII	GTNAC	3 cut(s)	71, 245, 485
MalI	GATC	2 cut(s)	44, 596
MboI	GATC	2 cut(s)	42, 594
MboII	GAAGA	9 cut(s)	47, 157, 200, 266, 398, 526, 664, 763, 870
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	8 cut(s)	63, 454, 468, 625, 647, 703, 763, 846
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	7 cut(s)	208, 211, 292, 585, 742, 790, 823
MseI	TTAA	6 cut(s)	179, 624, 659, 714, 858, 903
MslI	CAYNNNNRTG	1 cut(s)	638
MspI	CCGG	2 cut(s)	95, 894
MspR9I	CCNGG	2 cut(s)	677, 746
MvaI	CCWGG	2 cut(s)	677, 746
MwoI	GCNNNNNNNGC	1 cut(s)	733
NdeI	CATATG	1 cut(s)	152
NdeII	GATC	2 cut(s)	42, 594
NlaIII	CATG	1 cut(s)	436
NmuCI	GTSAC	2 cut(s)	71, 245
PfeI	GAWTC	4 cut(s)	11, 325, 374, 612
PflMI	CCANNNNNTGG	1 cut(s)	141
PfoI	TCCNGGA	1 cut(s)	744
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PshBI	ATTAAT	1 cut(s)	714
PsiI	TTATAA	1 cut(s)	693
Psp6I	CCWGG	2 cut(s)	675, 744
PspGI	CCWGG	2 cut(s)	675, 744
RsaI	GTAC	1 cut(s)	699
RsaNI	GTAC	1 cut(s)	698
RseI	CAYNNNNRTG	1 cut(s)	638
SaqAI	TTAA	6 cut(s)	179, 624, 659, 714, 858, 903
Sau3AI	GATC	2 cut(s)	42, 594
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	2 cut(s)	677, 746
SduI	GDGCHC	1 cut(s)	235
SfaNI	GCATC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	8 cut(s)	63, 454, 468, 625, 647, 703, 763, 846
SspI	AATATT	2 cut(s)	587, 805
SspMI	CTAG	2 cut(s)	528, 791
StyD4I	CCNGG	2 cut(s)	675, 744
TaaI	ACNGT	2 cut(s)	230, 287
TaiI	ACGT	3 cut(s)	659, 826, 912
TasI	AATT	8 cut(s)	63, 454, 468, 625, 647, 703, 763, 846
TatI	WGTACW	1 cut(s)	697
TfiI	GAWTC	4 cut(s)	11, 325, 374, 612
Tru1I	TTAA	6 cut(s)	179, 624, 659, 714, 858, 903
Tru9I	TTAA	6 cut(s)	179, 624, 659, 714, 858, 903
TscAI	CASTG	3 cut(s)	52, 337, 859
TseFI	GTSAC	2 cut(s)	71, 245
Tsp45I	GTSAC	2 cut(s)	71, 245
TspDTI	ATGAA	6 cut(s)	201, 260, 266, 619, 797, 864
TspRI	CASTG	3 cut(s)	52, 337, 859
Van91I	CCANNNNNTGG	1 cut(s)	141
VneI	GTGCAC	1 cut(s)	231
VspI	ATTAAT	1 cut(s)	714
XagI	CCTNNNNNAGG	2 cut(s)	477, 794
XapI	RAATTY	2 cut(s)	468, 846
XspI	CTAG	2 cut(s)	528, 791
ZraI	GACGTC	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.