Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009729

Physical Location & Seq

Genomic Coordinates Forward (+)

15654780 .. 15655536

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTTGCACACCAAGTTCCAAATCCCTGCTCCTTCCATTTCTTTCCGTGACTTGCATCTCAACATCGTCTCTGTCTTTTCCCCCACAAACTCCCCAAAGTCTTTGCCTTTTCTCTCTCGATCCCAATCAGTTCCTGCATACCTGTGTTTCACTTGGATCGAGATCGAGCTCTCCAACATCTGCGACGGCATTCTCAAGCTCCTTGACTCCAGGCTCATCCCCTCCGCCTGCGCCGGCGACTCCAAGGTCTTTTATCTCAAGATGAAGGGCGATTACCACCGTTATCTTGCCGAGTTCAAGACCGACGCTGAGCGCAAAAAGGCCGCAAAAAGCACCCTCTCCGCCTACAAGGCTGCTCAGGACATTGCCAATGCCGAACTGGCGCCAACACATCCAATCCGCCTGGGGTTGGCTCTCAACTTCTCGGTGTTTTACTATGAGATTCTGAACTCTCCTGACCGCGCCTACAGTCTTGCCAAACAGGCTTTTGATGAGGCGATCGCAGAATTGGACACTCTCGGAGAGGAGTCATACAAGGACAACACTTTGATAATGCAACTTCTCCGTGATAACCTCACCCTGTGGACCTCTGACATGCAGGACGATGGGCCTGATGACATTAAAGAAGCAGCGCCCAAGCCCACCGAAGAACCAAAACAGAAACCCAAGTCCAGGAGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016020 GO:0019222 GO:0023052 GO:0031090 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071944 GO:0098588 GO:0098805 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

228

Amino Acids

25.53

Weight (kDa)

5.66

Isoelectric Point (pI)

55.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009729)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g14320 pycom05g27920 pycom10g06640 pycom17g07560
rosa_chinensis	RchiOBHm_Chr1g0320321 RchiOBHm_Chr2g0086351 RchiOBHm_Chr6g0254621
rosa_laevigata	RLG00000014896
rosa_roxburghii	Rroxscaffold_7G00210630
rosa_rugosa	Rorug05G0553500 Rorug05G0554400
rosa_samantha	Rh6AG070600 Rh6AG070800 Rh6AG071000 Rh6AG071100 Rh6AG110900 Rh6BG063000 Rh6BG063400 Rh6BG063500 Rh7AG296800
rosa_wichuraiana	Rw6G006210 Rw6G006230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	382
AccII	CGCG	1 cut(s)	462
AciI	CCGC	5 cut(s)	225, 324, 342, 400, 460
AclWI	GGATC	2 cut(s)	114, 164
AcyI	GRCGYC	1 cut(s)	383
AdeI	CACNNNGTG	1 cut(s)	582
AfiI	CCNNNNNNNGG	2 cut(s)	409, 672
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	3 cut(s)	209, 402, 671
AluBI	AGCT	2 cut(s)	169, 199
AluI	AGCT	2 cut(s)	169, 199
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	2 cut(s)	114, 164
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	2 cut(s)	321, 608
ApeKI	GCWGC	2 cut(s)	353, 629
AsiSI	GCGATCGC	1 cut(s)	501
AspLEI	GCGC	5 cut(s)	233, 315, 385, 464, 634
AspS9I	GGNCC	2 cut(s)	585, 608
AsuHPI	GGTGA	1 cut(s)	568
AvaII	GGWCC	1 cut(s)	585
BanI	GGYRCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	171
BarI	GAAGNNNNNNTAC	2 cut(s)	257, 289
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	340, 641
BccI	CCATC	1 cut(s)	599
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	3 cut(s)	211, 404, 673
BcoDI	GTCTC	1 cut(s)	73
BfmI	CTRYAG	1 cut(s)	466
BfoI	RGCGCY	2 cut(s)	386, 635
BglI	GCCNNNNNGGC	3 cut(s)	350, 380, 482
BisI	GCNGC	3 cut(s)	324, 354, 630
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	3 cut(s)	325, 355, 631
Bme1390I	CCNGG	3 cut(s)	211, 404, 673
Bme18I	GGWCC	1 cut(s)	585
BmgT120I	GGNCC	2 cut(s)	585, 608
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	3 cut(s)	211, 404, 673
BmsI	GCATC	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	193
Bpu10I	CCTNAGC	1 cut(s)	357
Bpu1102I	GCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	2 cut(s)	179, 242
BsaBI	GATNNNNATC	2 cut(s)	124, 161
BsaHI	GRCGYC	1 cut(s)	383
BsaJI	CCNNGG	2 cut(s)	243, 403
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 672
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	363
Bse8I	GATNNNNATC	2 cut(s)	124, 161
BseBI	CCWGG	3 cut(s)	211, 404, 673
BseDI	CCNNGG	2 cut(s)	243, 403
BseGI	GGATG	2 cut(s)	216, 391
BseJI	GATNNNNATC	2 cut(s)	124, 161
BseLI	CCNNNNNNNGG	2 cut(s)	409, 672
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	300, 371
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	539
BseXI	GCAGC	2 cut(s)	340, 641
Bsh1236I	CGCG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	501
BshFI	GGCC	2 cut(s)	323, 610
BshNI	GGYRCC	1 cut(s)	382
BsiEI	CGRYCG	1 cut(s)	501
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	2 cut(s)	409, 672
BsmAI	GTCTC	1 cut(s)	73
BsmBI	CGTCTC	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	323, 610
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	119, 156, 162, 498
Bsp1720I	GCTNAGC	1 cut(s)	309
BspACI	CCGC	5 cut(s)	225, 324, 342, 400, 460
BspANI	GGCC	2 cut(s)	323, 610
BspCNI	CTCAG	2 cut(s)	301, 370
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	2 cut(s)	114, 164
BspT107I	GGYRCC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	363
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	384
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	243, 403
BssMI	GATC	4 cut(s)	119, 156, 162, 498
BssNI	GRCGYC	1 cut(s)	383
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	3 cut(s)	211, 404, 673
Bst4CI	ACNGT	2 cut(s)	281, 470
BstACI	GRCGYC	1 cut(s)	383
BstC8I	GCNNGC	2 cut(s)	229, 235
BstDEI	CTNAG	2 cut(s)	309, 357
BstF5I	GGATG	2 cut(s)	216, 391
BstFNI	CGCG	1 cut(s)	462
BstH2I	RGCGCY	2 cut(s)	386, 635
BstHHI	GCGC	5 cut(s)	233, 315, 385, 464, 634
BstKTI	GATC	4 cut(s)	122, 159, 165, 501
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	4 cut(s)	119, 156, 162, 498
BstMCI	CGRYCG	1 cut(s)	501
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 380, 482
BstNI	CCWGG	3 cut(s)	211, 404, 673
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	3 cut(s)	209, 402, 671
BstSFI	CTRYAG	1 cut(s)	466
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	340, 641
BsuRI	GGCC	2 cut(s)	323, 610
BtsCI	GGATG	2 cut(s)	216, 391
Cac8I	GCNNGC	2 cut(s)	229, 235
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	5 cut(s)	233, 315, 385, 464, 634
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	2 cut(s)	585, 608
CseI	GACGC	1 cut(s)	314
CviAII	CATG	1 cut(s)	595
CviJI	RGCY	9 cut(s)	169, 199, 214, 323, 353, 413, 485, 610, 640
CviKI_1	RGCY	9 cut(s)	169, 199, 214, 323, 353, 413, 485, 610, 640
DdeI	CTNAG	2 cut(s)	309, 357
DinI	GGCGCC	1 cut(s)	384
DpnI	GATC	4 cut(s)	121, 158, 164, 500
DpnII	GATC	4 cut(s)	119, 156, 162, 498
DraIII	CACNNNGTG	1 cut(s)	582
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
EciI	GGCGGA	3 cut(s)	214, 331, 389
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	585
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoRII	CCWGG	3 cut(s)	209, 402, 671
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	171
EgeI	GGCGCC	1 cut(s)	384
EheI	GGCGCC	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	1 cut(s)	598
FaiI	YATR	4 cut(s)	139, 438, 532, 596
FatI	CATG	1 cut(s)	594
Fnu4HI	GCNGC	3 cut(s)	324, 354, 630
FokI	GGATG	2 cut(s)	203, 378
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	3 cut(s)	324, 354, 630
GlaI	GCGC	5 cut(s)	232, 314, 384, 463, 633
GluI	GCNGC	3 cut(s)	324, 354, 630
GsuI	CTGGAG	1 cut(s)	193
HaeII	RGCGCY	2 cut(s)	386, 635
HaeIII	GGCC	2 cut(s)	323, 610
HapII	CCGG	1 cut(s)	234
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	5 cut(s)	233, 315, 385, 464, 634
Hin1I	GRCGYC	1 cut(s)	383
Hin1II	CATG	1 cut(s)	598
Hin6I	GCGC	5 cut(s)	231, 313, 383, 462, 632
HinP1I	GCGC	5 cut(s)	231, 313, 383, 462, 632
HinfI	GANTC	4 cut(s)	206, 239, 442, 527
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	1 cut(s)	585
Hpy188I	TCNGA	3 cut(s)	447, 521, 592
Hpy188III	TCNNGA	6 cut(s)	117, 160, 259, 298, 359, 455
Hpy8I	GTNNAC	1 cut(s)	585
Hpy99I	CGWCG	2 cut(s)	188, 308
HpyAV	CCTTC	2 cut(s)	42, 259
HpyCH4III	ACNGT	2 cut(s)	281, 470
HpyCH4V	TGCA	5 cut(s)	7, 55, 137, 556, 598
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 380, 482
HpyF3I	CTNAG	2 cut(s)	309, 357
Hsp92I	GRCGYC	1 cut(s)	383
Hsp92II	CATG	1 cut(s)	598
HspAI	GCGC	5 cut(s)	231, 313, 383, 462, 632
KasI	GGCGCC	1 cut(s)	382
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Kzo9I	GATC	4 cut(s)	119, 156, 162, 498
LmnI	GCTCC	2 cut(s)	34, 204
Lsp1109I	GCAGC	2 cut(s)	340, 641
LweI	GCATC	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	4 cut(s)	121, 158, 164, 500
MboI	GATC	4 cut(s)	119, 156, 162, 498
MboII	GAAGA	1 cut(s)	659
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	1 cut(s)	506
Mly113I	GGCGCC	1 cut(s)	383
MlyI	GAGTC	3 cut(s)	200, 233, 536
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	6 cut(s)	232, 347, 487, 517, 584, 598
MreI	CGCCGGCG	1 cut(s)	233
MroNI	GCCGGC	1 cut(s)	233
MseI	TTAA	1 cut(s)	621
MslI	CAYNNNNRTG	1 cut(s)	142
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	3 cut(s)	211, 404, 673
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	3 cut(s)	211, 404, 673
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	350, 380, 482
NaeI	GCCGGC	1 cut(s)	235
NarI	GGCGCC	1 cut(s)	383
NdeII	GATC	4 cut(s)	119, 156, 162, 498
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	1 cut(s)	598
NlaIV	GGNNCC	1 cut(s)	384
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	47
NspI	RCATGY	1 cut(s)	598
PctI	GAATGC	1 cut(s)	189
PdiI	GCCGGC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	442
PfoI	TCCNGGA	1 cut(s)	671
PkrI	GCNGC	3 cut(s)	325, 355, 631
Ple19I	CGATCG	1 cut(s)	501
PleI	GAGTC	3 cut(s)	200, 233, 535
PluTI	GGCGCC	1 cut(s)	386
PpsI	GAGTC	3 cut(s)	200, 233, 535
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	3 cut(s)	209, 402, 671
PspGI	CCWGG	3 cut(s)	209, 402, 671
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	2 cut(s)	585, 608
PstNI	CAGNNNCTG	1 cut(s)	134
PvuI	CGATCG	1 cut(s)	501
RgaI	GCGATCGC	1 cut(s)	501
RseI	CAYNNNNRTG	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	3 cut(s)	324, 354, 630
Sau3AI	GATC	4 cut(s)	119, 156, 162, 498
Sau96I	GGNCC	2 cut(s)	585, 608
SchI	GAGTC	3 cut(s)	200, 233, 536
ScrFI	CCNGG	3 cut(s)	211, 404, 673
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	6 cut(s)	144, 171, 201, 249, 576, 590
SfaAI	GCGATCGC	1 cut(s)	501
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	1 cut(s)	466
SfoI	GGCGCC	1 cut(s)	384
SgfI	GCGATCGC	1 cut(s)	501
SgrAI	CRCCGGYG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	585
SmiMI	CAYNNNNRTG	1 cut(s)	142
SmlI	CTYRAG	2 cut(s)	194, 257
SmoI	CTYRAG	2 cut(s)	194, 257
Sse9I	AATT	1 cut(s)	506
SsiI	CCGC	5 cut(s)	225, 324, 342, 400, 460
SspDI	GGCGCC	1 cut(s)	382
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	3 cut(s)	209, 402, 671
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	281, 470
TaqI	TCGA	3 cut(s)	118, 159, 165
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	1 cut(s)	506
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	442
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	2 cut(s)	353, 629
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	2 cut(s)	35, 554
VpaK11BI	GGWCC	1 cut(s)	585
XceI	RCATGY	1 cut(s)	598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.