Rh6BG063000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009729
Physical Location & Seq
Reverse (-)
9856723 .. 9857085
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG063000.1

Sequence Viewer

Length: 363 bp
ATGCCCTCTCTCTCTCTCTCTCTCTCTCCTTCTGTAACCCTAGAACAGGACCATATCTCCCGTCTTTGCACCATATCTCACTTTCTGGAAAATCCTTGGTCACCCAGAAGCGCGGCTGCTCAAGTTTTCGTTATGAATATCACCAGACTTTTGTCCATCCCTCTGTTTCTGGAGAAAGATGAAGAAAGGTTTGATGATGTTGGAGTGGATTGTGTGAGTCTTGATCTGTTTCGATTTGGATTTACCAGATCGTTAACTACGGATAGGATTCAGGAAAAATCACTGTTCTGTTCTGTGGAGAATTCAAAGCATTTGTCCTGCTCTGTTCCTTCACATGTAGATAGCGATTTCTCGGCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.48

Weight (kDa)

5.02

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 113
AciI CCGC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 301
AfiI CCNNNNNNNGG 1 cut(s) 46
AflIII ACRYGT 1 cut(s) 334
AgsI TTSAA 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 301
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 2 cut(s) 93, 133
AvaII GGWCC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 103
BccI CCATC 1 cut(s) 164
BfaI CTAG 1 cut(s) 41
BisI GCNGC 2 cut(s) 114, 117
BlsI GCNGC 2 cut(s) 115, 118
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 49
BoxI GACNNNNGTC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 95
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 103
Bsh1236I CGCG 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 46
Bsp143I GATC 2 cut(s) 223, 248
BspACI CCGC 1 cut(s) 113
BspFNI CGCG 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 2 cut(s) 223, 248
BssT1I CCWWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 285
BstEII GGTNACC 1 cut(s) 99
BstENI CCTNNNNNAGG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 2 cut(s) 226, 251
BstMBI GATC 2 cut(s) 223, 248
BstNSI RCATGY 1 cut(s) 338
BstPAI GACNNNNGTC 1 cut(s) 151
BstPI GGTNACC 1 cut(s) 99
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 103
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 281
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 49
CviAII CATG 1 cut(s) 335
CviJI RGCY 2 cut(s) 116, 356
CviKI_1 RGCY 2 cut(s) 116, 356
DpnI GATC 2 cut(s) 225, 250
DpnII GATC 2 cut(s) 223, 248
Eco130I CCWWGG 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 49
Eco91I GGTNACC 1 cut(s) 99
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoO65I GGTNACC 1 cut(s) 99
EcoRI GAATTC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 1 cut(s) 338
FaiI YATR 4 cut(s) 54, 74, 134, 336
FatI CATG 1 cut(s) 334
Fnu4HI GCNGC 2 cut(s) 114, 117
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 2 cut(s) 114, 117
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 112
GluI GCNGC 2 cut(s) 114, 117
GsuI CTGGAG 1 cut(s) 191
HhaI GCGC 1 cut(s) 113
Hin1II CATG 1 cut(s) 338
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HinfI GANTC 2 cut(s) 217, 268
HpaI GTTAAC 1 cut(s) 255
HphI GGTGA 2 cut(s) 93, 133
Hpy166II GTNNAC 1 cut(s) 255
Hpy188III TCNNGA 4 cut(s) 86, 170, 221, 272
Hpy8I GTNNAC 1 cut(s) 255
HpyAV CCTTC 2 cut(s) 39, 339
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4V TGCA 1 cut(s) 69
Hsp92II CATG 1 cut(s) 338
HspAI GCGC 1 cut(s) 111
KspAI GTTAAC 1 cut(s) 255
Kzo9I GATC 2 cut(s) 223, 248
LpnPI CCDG 8 cut(s) 32, 71, 118, 155, 157, 257, 259, 331
Lsp1109I GCAGC 1 cut(s) 103
MaeI CTAG 1 cut(s) 41
MaeIII GTNAC 2 cut(s) 34, 99
MalI GATC 2 cut(s) 225, 250
MboI GATC 2 cut(s) 223, 248
MboII GAAGA 1 cut(s) 194
MluCI AATT 1 cut(s) 301
MlyI GAGTC 1 cut(s) 226
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 2 cut(s) 16, 171
MseI TTAA 2 cut(s) 254, 361
MvnI CGCG 1 cut(s) 113
NdeII GATC 2 cut(s) 223, 248
NlaIII CATG 1 cut(s) 338
NmeAIII GCCGAG 1 cut(s) 332
NmuCI GTSAC 1 cut(s) 99
NspI RCATGY 1 cut(s) 338
PciI ACATGT 1 cut(s) 334
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 2 cut(s) 115, 118
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PscI ACATGT 1 cut(s) 334
PshAI GACNNNNGTC 1 cut(s) 151
PspEI GGTNACC 1 cut(s) 99
PspPI GGNCC 1 cut(s) 49
SaqAI TTAA 2 cut(s) 254, 361
SatI GCNGC 2 cut(s) 114, 117
Sau3AI GATC 2 cut(s) 223, 248
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 1 cut(s) 226
SetI ASST 1 cut(s) 191
SinI GGWCC 1 cut(s) 49
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 1 cut(s) 301
SsiI CCGC 1 cut(s) 113
SspMI CTAG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 285
TaqI TCGA 1 cut(s) 232
TasI AATT 1 cut(s) 301
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 2 cut(s) 254, 361
Tru9I TTAA 2 cut(s) 254, 361
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 1 cut(s) 99
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 99
TspDTI ATGAA 2 cut(s) 149, 195
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 49
XagI CCTNNNNNAGG 1 cut(s) 44
XapI RAATTY 1 cut(s) 301
XceI RCATGY 1 cut(s) 338
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.