Rh6BG063400

Belongs to the 14-3-3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009729
Physical Location & Seq
Reverse (-)
9869845 .. 9884242
14398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG063400.1

Sequence Viewer

Length: 435 bp
ATGCCTTGCTCAAGTAACTATCATAAACAGCAGAGAGATTCAATCAGAGCCCTGCAGAGGTTGATAGAGATGGTGGTGTCTTTGGATGAAAGACACGTCGGGTGGAGGATTCAAGGAAGCATATCAAGCGTGCAGCTGAGATTCTTTGCCACCAACTTTTCAAGGTTTGGAAAAAGCCTCATCACTAAAGGCTTTGAGGAAGCAATTGCTGAAGTTGATACGCTGGGAGAGAAATCATACAAGGACAGCACTCTAATCATGCAACTTCTGAGGGACAACCTCACTGTTTGGACTACAGATTTGCAGAAACATACTAATTTCTTTGTGGGAATGGATGCTGTTAACATTGAGAACTGGAGGATAACTAAGTTGTGGTACACTTCCTCAATGCAATTATTTTTTGAGGAGTTACTTAAGGCGAAATCACTTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203
Pfam Domains
Protein Families
14-3-3

Protein Analysis

144

Amino Acids

16.82

Weight (kDa)

8.76

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
14-3-3 PF00244 59 - 98 3.9e-12 14-3-3 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 1 cut(s) 57
AflII CTTAAG 1 cut(s) 413
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 3 cut(s) 42, 113, 162
AjiI CACGTC 1 cut(s) 97
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 133
ArsI GACNNNNNNTTYG 2 cut(s) 283, 315
BanII GRGCYC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 145
BccI CCATC 1 cut(s) 64
BfmI CTRYAG 2 cut(s) 53, 294
BfrI CTTAAG 1 cut(s) 413
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
BmgBI CACGTC 1 cut(s) 97
BmsI GCATC 1 cut(s) 325
BpmI CTGGAG 1 cut(s) 376
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 359
BseGI GGATG 2 cut(s) 91, 340
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMII CTCAG 2 cut(s) 128, 260
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 419
BseXI GCAGC 1 cut(s) 145
BseYI CCCAGC 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 52
BspCNI CTCAG 2 cut(s) 129, 261
BspMAI CTGCAG 1 cut(s) 57
BspTI CTTAAG 1 cut(s) 413
BsrI ACTGG 1 cut(s) 359
Bst4CI ACNGT 1 cut(s) 286
BstAFI CTTAAG 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 3 cut(s) 137, 269, 366
BstF5I GGATG 2 cut(s) 91, 340
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstSFI CTRYAG 2 cut(s) 53, 294
BstV1I GCAGC 1 cut(s) 145
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 2 cut(s) 91, 340
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 376
CviAII CATG 1 cut(s) 259
CviJI RGCY 4 cut(s) 50, 136, 177, 192
CviKI_1 RGCY 4 cut(s) 50, 136, 177, 192
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 3 cut(s) 137, 269, 366
Eco24I GRGCYC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 52
FaeI CATG 1 cut(s) 262
FaiI YATR 5 cut(s) 24, 122, 238, 260, 312
FaqI GGGAC 1 cut(s) 287
FatI CATG 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 2 cut(s) 98, 347
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 134
GluI GCNGC 1 cut(s) 134
GsaI CCCAGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 376
Hin1II CATG 1 cut(s) 262
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 3 cut(s) 38, 109, 141
HpaI GTTAAC 1 cut(s) 343
Hpy166II GTNNAC 2 cut(s) 343, 378
Hpy188I TCNGA 3 cut(s) 47, 270, 434
Hpy8I GTNNAC 2 cut(s) 343, 378
Hpy99I CGWCG 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 5 cut(s) 55, 133, 262, 304, 391
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 3 cut(s) 137, 269, 366
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 1 cut(s) 262
KspAI GTTAAC 1 cut(s) 343
LpnPI CCDG 3 cut(s) 65, 209, 340
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 1 cut(s) 325
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 14, 408
MfeI CAATTG 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 3 cut(s) 204, 316, 392
MnlI CCTC 9 cut(s) 51, 99, 188, 190, 264, 290, 351, 394, 397
MseI TTAA 2 cut(s) 342, 414
MspA1I CMGCKG 1 cut(s) 136
MspCI CTTAAG 1 cut(s) 413
MunI CAATTG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 126
NlaIII CATG 1 cut(s) 262
PfeI GAWTC 3 cut(s) 38, 109, 141
PkrI GCNGC 1 cut(s) 135
PspFI CCCAGC 1 cut(s) 223
PstI CTGCAG 1 cut(s) 57
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
SaqAI TTAA 2 cut(s) 342, 414
SatI GCNGC 1 cut(s) 134
SduI GDGCHC 1 cut(s) 52
SetI ASST 5 cut(s) 62, 99, 138, 167, 282
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 2 cut(s) 53, 294
SmlI CTYRAG 2 cut(s) 10, 413
SmoI CTYRAG 2 cut(s) 10, 413
Sse9I AATT 3 cut(s) 204, 316, 392
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 1 cut(s) 99
TasI AATT 3 cut(s) 204, 316, 392
TfiI GAWTC 3 cut(s) 38, 109, 141
Tru1I TTAA 2 cut(s) 342, 414
Tru9I TTAA 2 cut(s) 342, 414
TscAI CASTG 1 cut(s) 289
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 102
TspRI CASTG 1 cut(s) 289
Vha464I CTTAAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.