Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009729

Physical Location & Seq

Genomic Coordinates Forward (+)

10128324 .. 10129377

Gene Structure 1054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG071100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGTAGCAAGTTACAACAAGGGCTTTGAGGAAGCAATTGCTGAAGTTGATACGCTGGGAGAGAAATCATACAAGGACAGCACTCTAATCATGCAACTTCTGAGGGACAACCTCACTGTTTGGACTACAGATTTGCAGATTAAACCTGTCAATCTCATTGAGATCTCAAAATCAGACCTATGTTATGATATACAATTTGATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010604 GO:0014070 GO:0016020 GO:0019222 GO:0023052 GO:0030312 GO:0032870 GO:0033993 GO:0042176 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0048545 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071944 GO:0080090 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

68

Amino Acids

7.77

Weight (kDa)

4.24

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
14-3-3	PF00244	6 - 42	1.9e-12	14-3-3 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009729)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g14320 pycom05g27920 pycom10g06640 pycom17g07560
rosa_chinensis	RchiOBHm_Chr1g0320321 RchiOBHm_Chr2g0086351 RchiOBHm_Chr6g0254621
rosa_laevigata	RLG00000014896
rosa_roxburghii	Rroxscaffold_7G00210630
rosa_rugosa	Rorug05G0553500 Rorug05G0554400
rosa_samantha	Rh6AG070600 Rh6AG070800 Rh6AG071000 Rh6AG071100 Rh6AG110900 Rh6BG063000 Rh6BG063400 Rh6BG063500 Rh7AG296800
rosa_wichuraiana	Rw6G006210 Rw6G006230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	63
AlwI	GGATC	1 cut(s)	194
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
BfmI	CTRYAG	1 cut(s)	126
BglII	AGATCT	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	92
BseYI	CCCAGC	1 cut(s)	55
BslFI	GGGAC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	162, 199
BspCNI	CTCAG	1 cut(s)	93
BspPI	GGATC	1 cut(s)	194
BssMI	GATC	2 cut(s)	162, 199
Bst4CI	ACNGT	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	101
BstKTI	GATC	2 cut(s)	165, 202
BstMBI	GATC	2 cut(s)	162, 199
BstSFI	CTRYAG	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	114
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	1 cut(s)	24
CviKI_1	RGCY	1 cut(s)	24
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	2 cut(s)	164, 201
DpnII	GATC	2 cut(s)	162, 199
Eco57I	CTGAAG	1 cut(s)	63
FaeI	CATG	1 cut(s)	94
FaiI	YATR	5 cut(s)	70, 92, 181, 186, 191
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	1 cut(s)	90
GsaI	CCCAGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	102, 175
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	2 cut(s)	94, 136
HpyF3I	CTNAG	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	162, 199
LpnPI	CCDG	2 cut(s)	41, 159
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	2 cut(s)	164, 201
MboI	GATC	2 cut(s)	162, 199
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	1 cut(s)	162
MluCI	AATT	2 cut(s)	36, 194
MnlI	CCTC	3 cut(s)	22, 96, 122
MseI	TTAA	2 cut(s)	141, 205
MunI	CAATTG	1 cut(s)	36
NdeII	GATC	2 cut(s)	162, 199
NlaIII	CATG	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	141, 205
Sau3AI	GATC	2 cut(s)	162, 199
SetI	ASST	3 cut(s)	114, 148, 180
SfcI	CTRYAG	1 cut(s)	126
SgeI	CNNG	6 cut(s)	21, 31, 68, 85, 103, 158
Sse9I	AATT	2 cut(s)	36, 194
TaaI	ACNGT	1 cut(s)	118
TasI	AATT	2 cut(s)	36, 194
Tru1I	TTAA	2 cut(s)	141, 205
Tru9I	TTAA	2 cut(s)	141, 205
TscAI	CASTG	1 cut(s)	121
TspRI	CASTG	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.