Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009729

Physical Location & Seq

Genomic Coordinates Reverse (-)

9590789 .. 9600175

Gene Structure 9387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22840

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGTGGTGTCTTTGGATGAAAGACACGTCGGGTGGAGGATTGAAGGAAGCATATCAAGCGTGCAGCTGAGATTCTTTGCCACCAAACTTTCAAGAACCAGTTACCTTAGAGTTAACTTATTGTCGTGCATCAAAGGCATGTTAGAGGGCTTTGAGGAAGCAATTGCTGAAGTTGATACGCTGGGAGAGAAATCATACAAGGACAGCACTCTAATCATGCAACTTCTGAGGGACAACCTCACTGTTTGGACTACAGATTTGCAGGTCCATACTACTCTTACGTGGAGTATTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0019222 GO:0031410 GO:0031982 GO:0042470 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048770 GO:0050789 GO:0050826 GO:0050896 GO:0065007 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

98

Amino Acids

11.25

Weight (kDa)

6.07

Isoelectric Point (pI)

26.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
14-3-3	PF00244	49 - 84	6.7e-12	14-3-3 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009729)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g14320 pycom05g27920 pycom10g06640 pycom17g07560
rosa_chinensis	RchiOBHm_Chr1g0320321 RchiOBHm_Chr2g0086351 RchiOBHm_Chr6g0254621
rosa_laevigata	RLG00000014896
rosa_roxburghii	Rroxscaffold_7G00210630
rosa_rugosa	Rorug05G0553500 Rorug05G0554400
rosa_samantha	Rh6AG070600 Rh6AG070800 Rh6AG071000 Rh6AG071100 Rh6AG110900 Rh6BG063000 Rh6BG063400 Rh6BG063500 Rh7AG296800
rosa_wichuraiana	Rw6G006210 Rw6G006230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	189
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	44, 93
AjiI	CACGTC	1 cut(s)	28
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	64
ArsI	GACNNNNNNTTYG	2 cut(s)	241, 273
AspS9I	GGNCC	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	76
BfmI	CTRYAG	1 cut(s)	252
BfuAI	ACCTGC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme18I	GGWCC	1 cut(s)	265
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	265
BmsI	GCATC	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	22
BseMII	CTCAG	2 cut(s)	59, 218
BseNI	ACTGG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	76
BseYI	CCCAGC	1 cut(s)	181
BsgI	GTGCAG	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	245
BspCNI	CTCAG	2 cut(s)	60, 219
BspMI	ACCTGC	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	244
BstBAI	YACGTR	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	3 cut(s)	68, 107, 227
BstF5I	GGATG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 135
BstNSI	RCATGY	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	76
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	240
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	265
CviAII	CATG	2 cut(s)	139, 217
CviJI	RGCY	2 cut(s)	67, 150
CviKI_1	RGCY	2 cut(s)	67, 150
DdeI	CTNAG	3 cut(s)	68, 107, 227
Eco47I	GGWCC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	189
FaeI	CATG	2 cut(s)	142, 220
FaiI	YATR	5 cut(s)	53, 140, 196, 218, 270
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	2 cut(s)	138, 216
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	65
GsaI	CCCAGC	1 cut(s)	185
Hin1II	CATG	2 cut(s)	142, 220
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	72
HpaI	GTTAAC	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	1 cut(s)	93
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	2 cut(s)	27, 281
HpyCH4V	TGCA	4 cut(s)	64, 129, 220, 262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 135
HpyF3I	CTNAG	3 cut(s)	68, 107, 227
HpySE526I	ACGT	2 cut(s)	27, 281
Hsp92II	CATG	2 cut(s)	142, 220
KspAI	GTTAAC	1 cut(s)	115
LpnPI	CCDG	3 cut(s)	112, 167, 248
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	1 cut(s)	138
MaeII	ACGT	2 cut(s)	27, 281
MaeIII	GTNAC	1 cut(s)	101
MfeI	CAATTG	1 cut(s)	162
MluCI	AATT	1 cut(s)	162
MnlI	CCTC	5 cut(s)	30, 139, 148, 222, 248
MseI	TTAA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	67
MunI	CAATTG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	57, 135
NlaIII	CATG	2 cut(s)	142, 220
NspI	RCATGY	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	66
Ppu21I	YACGTR	1 cut(s)	282
PspFI	CCCAGC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	65
Sau96I	GGNCC	1 cut(s)	265
SetI	ASST	6 cut(s)	30, 69, 108, 240, 267, 284
SfaNI	GCATC	1 cut(s)	138
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	265
Sse9I	AATT	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	2 cut(s)	30, 284
TasI	AATT	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	265
XceI	RCATGY	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.