Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009729

Physical Location & Seq

Genomic Coordinates Reverse (-)

28782211 .. 28783922

Gene Structure 1712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27920.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGACAGGAAAGAGGTTGCTCGATCAGTCAATGAAAGCTTATCAGGCAGCTTCTAGTAAGGCAGAGAGTGACTTACCCCCCACACACCCCATCAGACTGGGTTTGGCCTTGAACTTCTCTGTCTTTTACTATGAAATATTGAACTCTCCGGAAAGGGCTTGTCACCTTGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAATTAGATACTTTGAGCGAGGAATCGTACAAGGATAGCACCTTGATCATGCAGCTTTTAAGGGACAACCTTACTTTGTGGACCTCTGACATTCCAGAGGATGGAGCCGAGGATATCCAGAAGGCGGATGGTGCTGCTAAACCTGGAGGTGAAGATGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

121

Amino Acids

13.22

Weight (kDa)

4.47

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009729)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g14320 pycom05g27920 pycom10g06640 pycom17g07560
rosa_chinensis	RchiOBHm_Chr1g0320321 RchiOBHm_Chr2g0086351 RchiOBHm_Chr6g0254621
rosa_laevigata	RLG00000014896
rosa_roxburghii	Rroxscaffold_7G00210630
rosa_rugosa	Rorug05G0553500 Rorug05G0554400
rosa_samantha	Rh6AG070600 Rh6AG070800 Rh6AG071000 Rh6AG071100 Rh6AG110900 Rh6BG063000 Rh6BG063400 Rh6BG063500 Rh7AG296800
rosa_wichuraiana	Rw6G006210 Rw6G006230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	299
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	1 cut(s)	323
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	2 cut(s)	299, 322
AgsI	TTSAA	2 cut(s)	112, 142
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	5 cut(s)	38, 50, 179, 191, 253
AluI	AGCT	5 cut(s)	38, 50, 179, 191, 253
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	3 cut(s)	47, 250, 332
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	155, 359
AvaII	GGWCC	1 cut(s)	279
BbvI	GCAGC	3 cut(s)	59, 262, 319
BccI	CCATC	3 cut(s)	98, 293, 320
BciT130I	CCWGG	1 cut(s)	342
BclI	TGATCA	1 cut(s)	243
BfaI	CTAG	1 cut(s)	54
BisI	GCNGC	3 cut(s)	48, 251, 333
BlsI	GCNGC	3 cut(s)	49, 252, 334
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	1 cut(s)	342
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 322
Bse1I	ACTGG	1 cut(s)	102
BseAI	TCCGGA	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	304, 331
BseLI	CCNNNNNNNGG	2 cut(s)	299, 322
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	102
BseXI	GCAGC	3 cut(s)	59, 262, 319
BshFI	GGCC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	299, 322
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	107
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	22, 243
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	209
BspEI	TCCGGA	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	2 cut(s)	22, 243
Bst2UI	CCWGG	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	304, 331
BstKTI	GATC	2 cut(s)	25, 246
BstMBI	GATC	2 cut(s)	22, 243
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 176, 329
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstV1I	GCAGC	3 cut(s)	59, 262, 319
BstXI	CCANNNNNNTGG	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	304, 331
Cac8I	GCNNGC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	8 cut(s)	38, 50, 107, 158, 179, 191, 253, 305
CviKI_1	RGCY	8 cut(s)	38, 50, 107, 158, 179, 191, 253, 305
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	2 cut(s)	24, 245
DpnII	GATC	2 cut(s)	22, 243
EciI	GGCGGA	1 cut(s)	338
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	340
EcoRV	GATATC	1 cut(s)	313
FaeI	CATG	1 cut(s)	250
FaiI	YATR	2 cut(s)	132, 248
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	1 cut(s)	246
FbaI	TGATCA	1 cut(s)	243
Fnu4HI	GCNGC	3 cut(s)	48, 251, 333
FokI	GGATG	2 cut(s)	311, 338
Fsp4HI	GCNGC	3 cut(s)	48, 251, 333
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	3 cut(s)	48, 251, 333
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	1 cut(s)	149
Hin1II	CATG	1 cut(s)	250
HindIII	AAGCTT	2 cut(s)	36, 177
HinfI	GANTC	1 cut(s)	221
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	2 cut(s)	155, 359
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188I	TCNGA	3 cut(s)	95, 199, 286
Hpy188III	TCNNGA	3 cut(s)	149, 293, 316
Hpy8I	GTNNAC	1 cut(s)	279
HpyAV	CCTTC	1 cut(s)	313
HpyCH4V	TGCA	3 cut(s)	170, 250, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 176, 329
HpyF3I	CTNAG	1 cut(s)	196
Hsp92II	CATG	1 cut(s)	250
Kpn2I	TCCGGA	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	22, 243
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	7 cut(s)	29, 83, 162, 306, 327, 329, 354
Lsp1109I	GCAGC	3 cut(s)	59, 262, 319
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	68, 161
MalI	GATC	2 cut(s)	24, 245
MboI	GATC	2 cut(s)	22, 243
MboII	GAAGA	1 cut(s)	362
MluCI	AATT	1 cut(s)	200
MnlI	CCTC	6 cut(s)	6, 211, 289, 292, 301, 338
MroI	TCCGGA	1 cut(s)	148
MseI	TTAA	1 cut(s)	257
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	3 cut(s)	44, 176, 329
NdeII	GATC	2 cut(s)	22, 243
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	1 cut(s)	304
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	2 cut(s)	68, 161
PfeI	GAWTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	299
PkrI	GCNGC	3 cut(s)	49, 252, 334
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	279
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	3 cut(s)	48, 251, 333
Sau3AI	GATC	2 cut(s)	22, 243
Sau96I	GGNCC	1 cut(s)	279
ScrFI	CCNGG	1 cut(s)	342
SfaNI	GCATC	1 cut(s)	343
SinI	GGWCC	1 cut(s)	279
Sse9I	AATT	1 cut(s)	200
SsiI	CCGC	1 cut(s)	323
SspI	AATATT	1 cut(s)	138
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	340
TaqI	TCGA	1 cut(s)	21
TasI	AATT	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TseFI	GTSAC	2 cut(s)	68, 161
TseI	GCWGC	3 cut(s)	47, 250, 332
Tsp45I	GTSAC	2 cut(s)	68, 161
TspDTI	ATGAA	3 cut(s)	47, 147, 201
Van91I	CCANNNNNTGG	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.