No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom03g14320 pycom05g27920 pycom10g06640 pycom17g07560 |
| rosa_chinensis | RchiOBHm_Chr1g0320321 RchiOBHm_Chr2g0086351 RchiOBHm_Chr6g0254621 |
| rosa_laevigata | RLG00000014896 |
| rosa_roxburghii | Rroxscaffold_7G00210630 |
| rosa_rugosa | Rorug05G0553500 Rorug05G0554400 |
| rosa_samantha | Rh6AG070600 Rh6AG070800 Rh6AG071000 Rh6AG071100 Rh6AG110900 Rh6BG063000 Rh6BG063400 Rh6BG063500 Rh7AG296800 |
| rosa_wichuraiana | Rw6G006210 Rw6G006230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 207 |
| AcsI | RAATTY | 4 cut(s) | 182, 308, 428, 659 |
| AfaI | GTAC | 1 cut(s) | 648 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 513 |
| AflIII | ACRYGT | 1 cut(s) | 550 |
| AgsI | TTSAA | 8 cut(s) | 134, 187, 252, 313, 433, 498, 569, 618 |
| AjiI | CACGTC | 1 cut(s) | 553 |
| AluBI | AGCT | 1 cut(s) | 592 |
| AluI | AGCT | 1 cut(s) | 592 |
| ApeKI | GCWGC | 3 cut(s) | 274, 394, 589 |
| ApoI | RAATTY | 4 cut(s) | 182, 308, 428, 659 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 41, 73, 127, 159 |
| BanII | GRGCYC | 3 cut(s) | 284, 404, 508 |
| BbvI | GCAGC | 3 cut(s) | 286, 406, 601 |
| BccI | CCATC | 4 cut(s) | 170, 296, 416, 520 |
| BfmI | CTRYAG | 3 cut(s) | 285, 405, 509 |
| BisI | GCNGC | 3 cut(s) | 275, 395, 590 |
| BlsI | GCNGC | 3 cut(s) | 276, 396, 591 |
| BmgBI | CACGTC | 1 cut(s) | 553 |
| BpmI | CTGGAG | 1 cut(s) | 59 |
| Bpu10I | CCTNAGC | 2 cut(s) | 270, 390 |
| BpuEI | CTTGAG | 2 cut(s) | 331, 451 |
| Bsa29I | ATCGAT | 1 cut(s) | 174 |
| BsaBI | GATNNNNATC | 1 cut(s) | 170 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 513 |
| Bse1I | ACTGG | 1 cut(s) | 675 |
| Bse8I | GATNNNNATC | 1 cut(s) | 170 |
| BseCI | ATCGAT | 1 cut(s) | 174 |
| BseGI | GGATG | 1 cut(s) | 547 |
| BseJI | GATNNNNATC | 1 cut(s) | 170 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 513 |
| BseMII | CTCAG | 1 cut(s) | 584 |
| BseNI | ACTGG | 1 cut(s) | 675 |
| BseXI | GCAGC | 3 cut(s) | 286, 406, 601 |
| BsgI | GTGCAG | 1 cut(s) | 608 |
| BshVI | ATCGAT | 1 cut(s) | 174 |
| BsiSI | CCGG | 1 cut(s) | 24 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 513 |
| Bsp1286I | GDGCHC | 3 cut(s) | 284, 404, 508 |
| Bsp143I | GATC | 4 cut(s) | 79, 104, 165, 411 |
| BspACI | CCGC | 1 cut(s) | 207 |
| BspCNI | CTCAG | 1 cut(s) | 585 |
| BspDI | ATCGAT | 1 cut(s) | 174 |
| BspMAI | CTGCAG | 3 cut(s) | 289, 409, 513 |
| BsrI | ACTGG | 1 cut(s) | 675 |
| BssMI | GATC | 4 cut(s) | 79, 104, 165, 411 |
| Bst4CI | ACNGT | 2 cut(s) | 115, 356 |
| BstC8I | GCNNGC | 1 cut(s) | 587 |
| BstDEI | CTNAG | 3 cut(s) | 270, 390, 593 |
| BstF5I | GGATG | 1 cut(s) | 547 |
| BstKTI | GATC | 4 cut(s) | 82, 107, 168, 414 |
| BstMBI | GATC | 4 cut(s) | 79, 104, 165, 411 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 582 |
| BstSFI | CTRYAG | 3 cut(s) | 285, 405, 509 |
| BstV1I | GCAGC | 3 cut(s) | 286, 406, 601 |
| Bsu15I | ATCGAT | 1 cut(s) | 174 |
| BsuTUI | ATCGAT | 1 cut(s) | 174 |
| BtrI | CACGTC | 1 cut(s) | 553 |
| BtsCI | GGATG | 1 cut(s) | 547 |
| Cac8I | GCNNGC | 1 cut(s) | 587 |
| ClaI | ATCGAT | 1 cut(s) | 174 |
| Csp6I | GTAC | 1 cut(s) | 647 |
| CviAII | CATG | 5 cut(s) | 163, 211, 337, 457, 671 |
| CviJI | RGCY | 6 cut(s) | 27, 282, 402, 506, 592, 633 |
| CviKI_1 | RGCY | 6 cut(s) | 27, 282, 402, 506, 592, 633 |
| CviQI | GTAC | 1 cut(s) | 647 |
| DdeI | CTNAG | 3 cut(s) | 270, 390, 593 |
| DpnI | GATC | 4 cut(s) | 81, 106, 167, 413 |
| DpnII | GATC | 4 cut(s) | 79, 104, 165, 411 |
| Eco24I | GRGCYC | 3 cut(s) | 284, 404, 508 |
| EcoRI | GAATTC | 3 cut(s) | 182, 308, 428 |
| EcoT38I | GRGCYC | 3 cut(s) | 284, 404, 508 |
| FaeI | CATG | 5 cut(s) | 166, 214, 340, 460, 674 |
| FaiI | YATR | 9 cut(s) | 164, 212, 234, 338, 360, 458, 480, 578, 672 |
| FatI | CATG | 5 cut(s) | 162, 210, 336, 456, 670 |
| FauI | CCCGC | 1 cut(s) | 214 |
| Fnu4HI | GCNGC | 3 cut(s) | 275, 395, 590 |
| FokI | GGATG | 1 cut(s) | 554 |
| FriOI | GRGCYC | 3 cut(s) | 284, 404, 508 |
| Fsp4HI | GCNGC | 3 cut(s) | 275, 395, 590 |
| GluI | GCNGC | 3 cut(s) | 275, 395, 590 |
| GsuI | CTGGAG | 1 cut(s) | 59 |
| HapII | CCGG | 1 cut(s) | 24 |
| Hin1II | CATG | 5 cut(s) | 166, 214, 340, 460, 674 |
| HinfI | GANTC | 7 cut(s) | 73, 124, 248, 374, 494, 565, 597 |
| HpaII | CCGG | 1 cut(s) | 24 |
| Hpy188I | TCNGA | 1 cut(s) | 503 |
| Hpy188III | TCNNGA | 3 cut(s) | 38, 77, 415 |
| Hpy99I | CGWCG | 1 cut(s) | 557 |
| HpyAV | CCTTC | 1 cut(s) | 167 |
| HpyCH4III | ACNGT | 2 cut(s) | 115, 356 |
| HpyCH4IV | ACGT | 2 cut(s) | 129, 552 |
| HpyCH4V | TGCA | 4 cut(s) | 287, 407, 511, 589 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 582 |
| HpyF3I | CTNAG | 3 cut(s) | 270, 390, 593 |
| HpySE526I | ACGT | 2 cut(s) | 129, 552 |
| Hsp92II | CATG | 5 cut(s) | 166, 214, 340, 460, 674 |
| Kzo9I | GATC | 4 cut(s) | 79, 104, 165, 411 |
| Lsp1109I | GCAGC | 3 cut(s) | 286, 406, 601 |
| MaeII | ACGT | 2 cut(s) | 129, 552 |
| MaeIII | GTNAC | 2 cut(s) | 350, 470 |
| MalI | GATC | 4 cut(s) | 81, 106, 167, 413 |
| MboI | GATC | 4 cut(s) | 79, 104, 165, 411 |
| MhlI | GDGCHC | 3 cut(s) | 284, 404, 508 |
| MluCI | AATT | 6 cut(s) | 182, 222, 258, 308, 428, 659 |
| MlyI | GAGTC | 1 cut(s) | 82 |
| MnlI | CCTC | 3 cut(s) | 507, 555, 644 |
| MseI | TTAA | 4 cut(s) | 110, 225, 261, 381 |
| MspA1I | CMGCKG | 1 cut(s) | 592 |
| MspI | CCGG | 1 cut(s) | 24 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 582 |
| NdeII | GATC | 4 cut(s) | 79, 104, 165, 411 |
| NlaIII | CATG | 5 cut(s) | 166, 214, 340, 460, 674 |
| PfeI | GAWTC | 6 cut(s) | 124, 248, 374, 494, 565, 597 |
| PkrI | GCNGC | 3 cut(s) | 276, 396, 591 |
| PleI | GAGTC | 1 cut(s) | 81 |
| PpsI | GAGTC | 1 cut(s) | 81 |
| PstI | CTGCAG | 3 cut(s) | 289, 409, 513 |
| PvuII | CAGCTG | 1 cut(s) | 592 |
| RsaI | GTAC | 1 cut(s) | 648 |
| RsaNI | GTAC | 1 cut(s) | 647 |
| SaqAI | TTAA | 4 cut(s) | 110, 225, 261, 381 |
| SatI | GCNGC | 3 cut(s) | 275, 395, 590 |
| Sau3AI | GATC | 4 cut(s) | 79, 104, 165, 411 |
| SchI | GAGTC | 1 cut(s) | 82 |
| SduI | GDGCHC | 3 cut(s) | 284, 404, 508 |
| SetI | ASST | 7 cut(s) | 132, 198, 324, 518, 555, 594, 623 |
| SfcI | CTRYAG | 3 cut(s) | 285, 405, 509 |
| SmlI | CTYRAG | 2 cut(s) | 346, 466 |
| SmoI | CTYRAG | 2 cut(s) | 346, 466 |
| Sse9I | AATT | 6 cut(s) | 182, 222, 258, 308, 428, 659 |
| SsiI | CCGC | 1 cut(s) | 207 |
| SspI | AATATT | 1 cut(s) | 7 |
| TaaI | ACNGT | 2 cut(s) | 115, 356 |
| TaiI | ACGT | 2 cut(s) | 132, 555 |
| TaqI | TCGA | 3 cut(s) | 168, 174, 414 |
| TasI | AATT | 6 cut(s) | 182, 222, 258, 308, 428, 659 |
| TatI | WGTACW | 1 cut(s) | 646 |
| TfiI | GAWTC | 6 cut(s) | 124, 248, 374, 494, 565, 597 |
| Tru1I | TTAA | 4 cut(s) | 110, 225, 261, 381 |
| Tru9I | TTAA | 4 cut(s) | 110, 225, 261, 381 |
| TseI | GCWGC | 3 cut(s) | 274, 394, 589 |
| TspDTI | ATGAA | 5 cut(s) | 17, 221, 366, 558, 659 |
| XapI | RAATTY | 4 cut(s) | 182, 308, 428, 659 |