Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009729

Physical Location & Seq

Genomic Coordinates Reverse (-)

5503535 .. 5505202

Gene Structure 1668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g07560.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAAAGGTGACTACCACAGGTACCTTGCAGAGTTTAAGACTGGAGGCGAGAGAAAGGAAGCAGCTGAGAGTACTTTGTTGGCTTACAAGTCTGCTCAGGACATTGCCCTCGCTGAGCTGGCTCCAACCCACCCAATAAGGCTTGGACTTGCACTCAACTTCTCAGTTTTCTACTATGAAATCCTTAATTCACCCGATCGTGCTTGCAATCTGGCAAAACAGGCTTTTGATGAGGCTATTTCTGAACTTGACACATTGGGTGAGGAATCCTACAAGGATAGCACTTTGATCATGCAGCTTCTCCGAGACAATCTGACACTCTGGACTTCTGATATCACGGATGATGCCGGGGATGAAATCAAGGAAGCATCAAAGCGCGAATCAAGTGAAGCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000166 GO:0001505 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004620 GO:0004623 GO:0004857 GO:0004860 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006469 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006587 GO:0006588 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008144 GO:0008150 GO:0008152 GO:0008426 GO:0009058 GO:0009072 GO:0009308 GO:0009506 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010563 GO:0010605 GO:0012505 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0017076 GO:0018130 GO:0018958 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019438 GO:0019752 GO:0019887 GO:0030054 GO:0030234 GO:0030291 GO:0030312 GO:0030554 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031570 GO:0032268 GO:0032269 GO:0032553 GO:0032555 GO:0032559 GO:0032768 GO:0032770 GO:0033554 GO:0033673 GO:0034641 GO:0035639 GO:0036094 GO:0042133 GO:0042136 GO:0042221 GO:0042325 GO:0042326 GO:0042427 GO:0042428 GO:0042430 GO:0042435 GO:0043085 GO:0043086 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043549 GO:0044092 GO:0044093 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0045786 GO:0045859 GO:0045936 GO:0046189 GO:0046483 GO:0046686 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051341 GO:0051348 GO:0051353 GO:0051716 GO:0051726 GO:0052689 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0097159 GO:0097164 GO:0097367 GO:0098772 GO:1901160 GO:1901162 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04142 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04142 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

133

Amino Acids

14.77

Weight (kDa)

4.54

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009729)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g14320 pycom05g27920 pycom10g06640 pycom17g07560
rosa_chinensis	RchiOBHm_Chr1g0320321 RchiOBHm_Chr2g0086351 RchiOBHm_Chr6g0254621
rosa_laevigata	RLG00000014896
rosa_roxburghii	Rroxscaffold_7G00210630
rosa_rugosa	Rorug05G0553500 Rorug05G0554400
rosa_samantha	Rh6AG070600 Rh6AG070800 Rh6AG071000 Rh6AG071100 Rh6AG110900 Rh6BG063000 Rh6BG063400 Rh6BG063500 Rh7AG296800
rosa_wichuraiana	Rw6G006210 Rw6G006230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	21
AccII	CGCG	1 cut(s)	378
AfaI	GTAC	2 cut(s)	23, 73
AluBI	AGCT	3 cut(s)	65, 118, 298
AluI	AGCT	3 cut(s)	65, 118, 298
Alw26I	GTCTC	1 cut(s)	300
ApeKI	GCWGC	2 cut(s)	62, 295
Asp718I	GGTACC	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	378
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	3 cut(s)	20, 183, 272
BanI	GGYRCC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	74, 307
BclI	TGATCA	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	300
BisI	GCNGC	2 cut(s)	63, 296
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	2 cut(s)	64, 297
BmcAI	AGTACT	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	349
BmiI	GGNNCC	2 cut(s)	23, 123
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	2 cut(s)	334, 377
BpmI	CTGGAG	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	114
BpuMI	CCSGG	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	348
Bse1I	ACTGG	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	2 cut(s)	346, 358
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	4 cut(s)	57, 105, 110, 177
BseNI	ACTGG	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	74, 307
Bsh1236I	CGCG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	199
BshNI	GGYRCC	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	348
BsmAI	GTCTC	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	196, 288
Bsp1720I	GCTNAGC	1 cut(s)	114
BspCNI	CTCAG	4 cut(s)	58, 106, 109, 176
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	23, 123
BspT107I	GGYRCC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	2 cut(s)	196, 288
Bst4CI	ACNGT	1 cut(s)	396
BstC8I	GCNNGC	2 cut(s)	120, 205
BstDEI	CTNAG	4 cut(s)	66, 96, 114, 163
BstF5I	GGATG	2 cut(s)	346, 358
BstFNI	CGCG	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	2 cut(s)	199, 291
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	2 cut(s)	196, 288
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 221
BstSCI	CCNGG	1 cut(s)	347
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	74, 307
BtsCI	GGATG	2 cut(s)	346, 358
Cac8I	GCNNGC	2 cut(s)	120, 205
CfoI	GCGC	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	22, 72
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	8 cut(s)	65, 83, 118, 122, 142, 224, 236, 298
CviKI_1	RGCY	8 cut(s)	65, 83, 118, 122, 142, 224, 236, 298
CviQI	GTAC	2 cut(s)	22, 72
DdeI	CTNAG	4 cut(s)	66, 96, 114, 163
DpnI	GATC	2 cut(s)	198, 290
DpnII	GATC	2 cut(s)	196, 288
Eco32I	GATATC	1 cut(s)	334
EcoRV	GATATC	1 cut(s)	334
FaeI	CATG	1 cut(s)	295
FaiI	YATR	2 cut(s)	177, 293
FatI	CATG	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	63, 296
FokI	GGATG	2 cut(s)	353, 365
Fsp4HI	GCNGC	2 cut(s)	63, 296
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	2 cut(s)	63, 296
GsuI	CTGGAG	1 cut(s)	63
HapII	CCGG	1 cut(s)	348
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	1 cut(s)	295
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HinfI	GANTC	2 cut(s)	266, 380
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	3 cut(s)	20, 183, 272
Hpy188I	TCNGA	4 cut(s)	244, 305, 315, 331
Hpy188III	TCNNGA	2 cut(s)	98, 322
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4V	TGCA	4 cut(s)	29, 152, 207, 295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 221
HpyF3I	CTNAG	4 cut(s)	66, 96, 114, 163
Hsp92II	CATG	1 cut(s)	295
HspAI	GCGC	1 cut(s)	376
KpnI	GGTACC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	196, 288
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	8 cut(s)	4, 27, 83, 104, 197, 206, 307, 361
Lsp1109I	GCAGC	2 cut(s)	74, 307
LweI	GCATC	2 cut(s)	334, 377
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	2 cut(s)	198, 290
MboI	GATC	2 cut(s)	196, 288
MluCI	AATT	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	4 cut(s)	38, 119, 226, 256
MseI	TTAA	2 cut(s)	36, 186
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	1 cut(s)	349
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	119, 221
NciI	CCSGG	1 cut(s)	349
NdeII	GATC	2 cut(s)	196, 288
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	2 cut(s)	23, 123
NmuCI	GTSAC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	266, 380
PkrI	GCNGC	2 cut(s)	64, 297
Ple19I	CGATCG	1 cut(s)	199
PspN4I	GGNNCC	2 cut(s)	23, 123
PvuI	CGATCG	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	23, 73
RsaNI	GTAC	2 cut(s)	22, 72
SaqAI	TTAA	2 cut(s)	36, 186
SatI	GCNGC	2 cut(s)	63, 296
Sau3AI	GATC	2 cut(s)	196, 288
ScaI	AGTACT	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	349
SetI	ASST	6 cut(s)	10, 23, 27, 67, 120, 300
SfaNI	GCATC	2 cut(s)	334, 377
Sse9I	AATT	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	396
TasI	AATT	1 cut(s)	187
TatI	WGTACW	1 cut(s)	71
TfiI	GAWTC	2 cut(s)	266, 380
Tru1I	TTAA	2 cut(s)	36, 186
Tru9I	TTAA	2 cut(s)	36, 186
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	62, 295
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	3 cut(s)	17, 192, 369
TspGWI	ACGGA	1 cut(s)	353
ZrmI	AGTACT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.