Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002327

Physical Location & Seq

Genomic Coordinates Reverse (-)

15660402 .. 15663799

Gene Structure 3398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGTCTTGCCAAAAAGGGATAAAAGTTACCTAGTTAATGGAGTTTCTACCAAAGGATGGTTTACTGTGGATTTTACTTGGGACGACCTTGCATCTGTTTATGTTACTCAGGGGATATATTCTCGAACTAATAGGTTTGACGGCAATCAGTACCCAATTCTCCTTATTGAAGATGTTGCTATGCAGTTCAAACCTCCAGGCTTATGGTTGAATATTCAGCATGATATCTTCTTCTCACAACACAACTTGAGTATGAGAAACTATGTGCTTTCTGTATCTAAACAAGTGGTTATCAATTATATCTCATCACCGGAGGTGGCTTTCCTGAACAGTATCAAAGCACGGGTTAGTCCGAGTGCAACAAAGCTGGTCTTTCGGTTTTTGGGACAAGATGAGATGGAGCCTTCAACCAACCAAACTTATGGTTCTTTATTAAAGAATCTCACATTTATCAAGACATTTGCCTCCGGAATTCTAATTCCTAAAACTTACATATGGCCTTTCACCAAGGATAATTATTTAGAGCCTCACACTCCAGTTGTAACGGATGCTCATAAAGAAGGGCTAACAGTATTTGCATCAGATTTTGTGAGTGACTATCCATTAGCTTACAATTACAGTTATGATGCAGTGTCCGAGTACCTGCAATTTATTGACAATGGTGACTTCAGTGTTGATGGTGTGCTGTCTGACTTTCCAATAACACCATCTGAGGCCATAAATTGTTTTGCTCATCTTGGAAGTAATGCTTCAGGACAAGCCAAGCCCTTGGTTATCTCGAAATACGGAGCAAGTGGAGACTTCCCAAGTTGTACTGACTTGGCATATGAAAAAGCAATTGCAGATGGGGTAGATGTACTAGATTGTCCTGTACAAATATCCCAGGATGGAATACCATTCTGCGCAAGTTCTATAAATCTTATAGATATCACGAAAGTTGCTCAATCACCTTTTAACCGCCTCACAACGGTTGTTCCAGAAATTAAGGCTGGCAGTGGAATATATACCTTTAGCCTAGCATGGAAAGACATTGAAGGCCTGACCCCAACAATATCAAATCCCTGGTCAAAGTACACGTTGTTCCGGAATCCAATGTCCAAAACTGGTGGCAAGTACTTGACATTATCTGATTTCTTGGCCTTGGCAAAGAGGTCAAGTTCTCTTTCTGGTGTCTTGATCGACATAGAGGAGGTATGCAGCGTATCTTGCAGAGAAGCAGAAATTAAGTATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0006968 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009505 GO:0009506 GO:0009653 GO:0009664 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010026 GO:0010052 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0010383 GO:0010441 GO:0010442 GO:0016020 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030243 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042578 GO:0043167 GO:0043169 GO:0043170 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0046872 GO:0048364 GO:0048367 GO:0048468 GO:0048469 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0052541 GO:0055044 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

412

Amino Acids

45.6

Weight (kDa)

5.14

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	263 - 381	1.3e-09	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66970 AT1G66970 AT1G66970 AT4G26690
fragaria_vesca	FvH4_3g13670 FvH4_3g13670 FvH4_3g13670 FvH4_3g30290 FvH4_3g30290
malus_domestica	MD03G1190400.v1.1 MD11G1207100.v1.1
prunus_persica	Prupe.4G228400_v2.0.a1 Prupe.4G228400_v2.0.a1
pyrus_communis	pycom03g14330 pycom03g14370 pycom11g18010
rosa_chinensis	RchiOBHm_Chr5g0022921 RchiOBHm_Chr5g0056171
rosa_laevigata	RLG00000032682 RLG00000035057 RLG00000035060
rosa_multiflora	Rmu_sc0000680.1_g000027 Rmu_sc0001787.1_g000024 Rmu_sc0002675.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024130 Rroxscaffold_1G00056420
rosa_rugosa	Rorug05G0075500 Rorug05G0297800 Rorug05G0297800
rosa_samantha	Rh5AG162000 Rh5AG368900 Rh5BG161200 Rh5BG379900 Rh5CG175800 Rh5CG402700 Rh5DG162500 Rh5DG392700 Rh5DG392900
rosa_wichuraiana	Rw0G004450 Rw0G012690 Rw5G014580 Rw5G034630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	904
Acc36I	ACCTGC	1 cut(s)	651
AccB7I	CCANNNNNTGG	1 cut(s)	57
AccIII	TCCGGA	2 cut(s)	467, 1083
AciI	CCGC	1 cut(s)	958
AcsI	RAATTY	1 cut(s)	471
AcuI	CTGAAG	2 cut(s)	652, 735
AfaI	GTAC	7 cut(s)	152, 641, 814, 858, 873, 1073, 1115
AfiI	CCNNNNNNNGG	2 cut(s)	57, 967
AflIII	ACRYGT	1 cut(s)	1074
AgsI	TTSAA	5 cut(s)	170, 190, 211, 408, 1034
AjnI	CCWGG	3 cut(s)	196, 882, 1061
AluBI	AGCT	2 cut(s)	367, 608
AluI	AGCT	2 cut(s)	367, 608
Alw26I	GTCTC	1 cut(s)	792
Aor13HI	TCCGGA	2 cut(s)	467, 1083
AoxI	GGCC	4 cut(s)	497, 714, 1036, 1137
ApeKI	GCWGC	1 cut(s)	1197
ApoI	RAATTY	1 cut(s)	471
ArsI	GACNNNNNNTTYG	2 cut(s)	1049, 1081
AspLEI	GCGC	1 cut(s)	905
AsuHPI	GGTGA	4 cut(s)	300, 496, 674, 939
BbvI	GCAGC	1 cut(s)	1209
BccI	CCATC	6 cut(s)	51, 391, 671, 715, 839, 881
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	3 cut(s)	198, 884, 1063
BcoDI	GTCTC	1 cut(s)	792
BfaI	CTAG	3 cut(s)	32, 860, 1016
BfuAI	ACCTGC	1 cut(s)	651
BisI	GCNGC	1 cut(s)	1198
BlsI	GCNGC	1 cut(s)	1199
BmcAI	AGTACT	1 cut(s)	1115
Bme1390I	CCNGG	3 cut(s)	198, 884, 1063
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	3 cut(s)	198, 884, 1063
BmsI	GCATC	4 cut(s)	101, 538, 587, 616
BpmI	CTGGAG	2 cut(s)	180, 519
BpuEI	CTTGAG	1 cut(s)	268
BsaJI	CCNNGG	5 cut(s)	507, 768, 882, 1061, 1140
BsaWI	WCCGGW	3 cut(s)	310, 467, 1083
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 967
Bse1I	ACTGG	2 cut(s)	536, 1108
BseAI	TCCGGA	2 cut(s)	467, 1083
BseBI	CCWGG	3 cut(s)	198, 884, 1063
BseDI	CCNNGG	5 cut(s)	507, 768, 882, 1061, 1140
BseGI	GGATG	3 cut(s)	62, 553, 892
BseLI	CCNNNNNNNGG	2 cut(s)	57, 967
BseMII	CTCAG	2 cut(s)	122, 702
BseNI	ACTGG	2 cut(s)	536, 1108
BseRI	GAGGAG	1 cut(s)	1202
BseXI	GCAGC	1 cut(s)	1209
BshFI	GGCC	4 cut(s)	499, 716, 1038, 1139
BsiSI	CCGG	3 cut(s)	311, 468, 1084
BslFI	GGGAC	2 cut(s)	95, 399
BslI	CCNNNNNNNGG	2 cut(s)	57, 967
BsmAI	GTCTC	1 cut(s)	792
BsmFI	GGGAC	2 cut(s)	95, 399
BsnI	GGCC	4 cut(s)	499, 716, 1038, 1139
Bsp13I	TCCGGA	2 cut(s)	467, 1083
Bsp1407I	TGTACA	1 cut(s)	871
Bsp143I	GATC	1 cut(s)	1176
BspACI	CCGC	1 cut(s)	958
BspANI	GGCC	4 cut(s)	499, 716, 1038, 1139
BspCNI	CTCAG	2 cut(s)	121, 703
BspEI	TCCGGA	2 cut(s)	467, 1083
BspLI	GGNNCC	1 cut(s)	402
BspMI	ACCTGC	1 cut(s)	651
BsrGI	TGTACA	1 cut(s)	871
BsrI	ACTGG	2 cut(s)	536, 1108
BssECI	CCNNGG	5 cut(s)	507, 768, 882, 1061, 1140
BssMI	GATC	1 cut(s)	1176
BssT1I	CCWWGG	3 cut(s)	507, 768, 1140
Bst2UI	CCWGG	3 cut(s)	198, 884, 1063
Bst4CI	ACNGT	5 cut(s)	67, 332, 571, 620, 970
BstAUI	TGTACA	1 cut(s)	871
BstC8I	GCNNGC	1 cut(s)	991
BstDEI	CTNAG	2 cut(s)	108, 711
BstF5I	GGATG	3 cut(s)	62, 553, 892
BstHHI	GCGC	1 cut(s)	905
BstKTI	GATC	1 cut(s)	1179
BstMAI	GTCTC	1 cut(s)	792
BstMBI	GATC	1 cut(s)	1176
BstMWI	GCNNNNNNNGC	1 cut(s)	1206
BstNI	CCWGG	3 cut(s)	198, 884, 1063
BstSCI	CCNGG	3 cut(s)	196, 882, 1061
BstV1I	GCAGC	1 cut(s)	1209
BstXI	CCANNNNNNTGG	3 cut(s)	204, 422, 769
BsuRI	GGCC	4 cut(s)	499, 716, 1038, 1139
BtsCI	GGATG	3 cut(s)	62, 553, 892
BtsI	GCAGTG	2 cut(s)	636, 1000
BtsIMutI	CAGTG	3 cut(s)	636, 676, 1000
BveI	ACCTGC	1 cut(s)	651
Cac8I	GCNNGC	1 cut(s)	991
CfoI	GCGC	1 cut(s)	905
Csp6I	GTAC	7 cut(s)	151, 640, 813, 857, 872, 1072, 1114
CspCI	CAANNNNNGTGG	2 cut(s)	1087, 1122
CviAII	CATG	2 cut(s)	221, 1020
CviQI	GTAC	7 cut(s)	151, 640, 813, 857, 872, 1072, 1114
DdeI	CTNAG	2 cut(s)	108, 711
DpnI	GATC	1 cut(s)	1178
DpnII	GATC	1 cut(s)	1176
Eco130I	CCWWGG	3 cut(s)	507, 768, 1140
Eco147I	AGGCCT	1 cut(s)	1038
Eco32I	GATATC	2 cut(s)	226, 928
Eco57I	CTGAAG	2 cut(s)	652, 735
EcoRI	GAATTC	1 cut(s)	471
EcoRII	CCWGG	3 cut(s)	196, 882, 1061
EcoRV	GATATC	2 cut(s)	226, 928
EcoT14I	CCWWGG	3 cut(s)	507, 768, 1140
ErhI	CCWWGG	3 cut(s)	507, 768, 1140
FaeI	CATG	2 cut(s)	224, 1023
FalI	AAGNNNNNCTT	4 cut(s)	356, 388, 733, 765
FaqI	GGGAC	2 cut(s)	95, 399
FatI	CATG	2 cut(s)	220, 1019
FauNDI	CATATG	2 cut(s)	494, 826
Fnu4HI	GCNGC	1 cut(s)	1198
FokI	GGATG	3 cut(s)	69, 560, 899
Fsp4HI	GCNGC	1 cut(s)	1198
FspBI	CTAG	3 cut(s)	32, 860, 1016
FspI	TGCGCA	1 cut(s)	904
GlaI	GCGC	1 cut(s)	904
GluI	GCNGC	1 cut(s)	1198
GsuI	CTGGAG	2 cut(s)	180, 519
HaeIII	GGCC	4 cut(s)	499, 716, 1038, 1139
HapII	CCGG	3 cut(s)	311, 468, 1084
HhaI	GCGC	1 cut(s)	905
Hin1II	CATG	2 cut(s)	224, 1023
Hin6I	GCGC	1 cut(s)	903
HinP1I	GCGC	1 cut(s)	903
HinfI	GANTC	2 cut(s)	439, 1087
HpaII	CCGG	3 cut(s)	311, 468, 1084
HphI	GGTGA	4 cut(s)	300, 496, 674, 939
Hpy166II	GTNNAC	2 cut(s)	63, 1074
Hpy188I	TCNGA	6 cut(s)	354, 583, 637, 691, 712, 1129
Hpy8I	GTNNAC	2 cut(s)	63, 1074
HpyAV	CCTTC	3 cut(s)	414, 554, 1028
HpyCH4III	ACNGT	5 cut(s)	67, 332, 571, 620, 970
HpyCH4IV	ACGT	1 cut(s)	1076
HpyCH4V	TGCA	9 cut(s)	92, 184, 359, 578, 629, 646, 842, 1197, 1209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1206
HpyF3I	CTNAG	2 cut(s)	108, 711
HpySE526I	ACGT	1 cut(s)	1076
Hsp92II	CATG	2 cut(s)	224, 1023
HspAI	GCGC	1 cut(s)	903
Kpn2I	TCCGGA	2 cut(s)	467, 1083
Kzo9I	GATC	1 cut(s)	1176
LmnI	GCTCC	2 cut(s)	400, 788
Lsp1109I	GCAGC	1 cut(s)	1209
LweI	GCATC	4 cut(s)	101, 538, 587, 616
MaeI	CTAG	3 cut(s)	32, 860, 1016
MaeII	ACGT	1 cut(s)	1076
MaeIII	GTNAC	5 cut(s)	26, 103, 541, 593, 662
MalI	GATC	1 cut(s)	1178
MboI	GATC	1 cut(s)	1176
MboII	GAAGA	3 cut(s)	182, 220, 223
MfeI	CAATTG	1 cut(s)	837
MnlI	CCTC	9 cut(s)	204, 307, 475, 537, 706, 971, 1143, 1180, 1183
MroI	TCCGGA	2 cut(s)	467, 1083
MseI	TTAA	5 cut(s)	36, 434, 954, 984, 1224
MspI	CCGG	3 cut(s)	311, 468, 1084
MspR9I	CCNGG	3 cut(s)	198, 884, 1063
MunI	CAATTG	1 cut(s)	837
MvaI	CCWGG	3 cut(s)	198, 884, 1063
MwoI	GCNNNNNNNGC	1 cut(s)	1206
NdeI	CATATG	2 cut(s)	494, 826
NdeII	GATC	1 cut(s)	1176
NlaIII	CATG	2 cut(s)	224, 1023
NlaIV	GGNNCC	1 cut(s)	402
NmuCI	GTSAC	2 cut(s)	593, 662
NsbI	TGCGCA	1 cut(s)	904
PceI	AGGCCT	1 cut(s)	1038
PfeI	GAWTC	2 cut(s)	439, 1087
PflMI	CCANNNNNTGG	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	1199
Psp6I	CCWGG	3 cut(s)	196, 882, 1061
PspGI	CCWGG	3 cut(s)	196, 882, 1061
PspN4I	GGNNCC	1 cut(s)	402
PsrI	GAACNNNNNNTAC	2 cut(s)	1064, 1096
RsaI	GTAC	7 cut(s)	152, 641, 814, 858, 873, 1073, 1115
RsaNI	GTAC	7 cut(s)	151, 640, 813, 857, 872, 1072, 1114
SaqAI	TTAA	5 cut(s)	36, 434, 954, 984, 1224
SatI	GCNGC	1 cut(s)	1198
Sau3AI	GATC	1 cut(s)	1176
ScaI	AGTACT	1 cut(s)	1115
ScrFI	CCNGG	3 cut(s)	198, 884, 1063
SfaNI	GCATC	4 cut(s)	101, 538, 587, 616
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
SseBI	AGGCCT	1 cut(s)	1038
SsiI	CCGC	1 cut(s)	958
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	3 cut(s)	32, 860, 1016
StuI	AGGCCT	1 cut(s)	1038
StyD4I	CCNGG	3 cut(s)	196, 882, 1061
StyI	CCWWGG	3 cut(s)	507, 768, 1140
TaaI	ACNGT	5 cut(s)	67, 332, 571, 620, 970
TaiI	ACGT	1 cut(s)	1079
TaqI	TCGA	3 cut(s)	124, 779, 1179
TatI	WGTACW	5 cut(s)	812, 856, 871, 1071, 1113
TfiI	GAWTC	2 cut(s)	439, 1087
Tru1I	TTAA	5 cut(s)	36, 434, 954, 984, 1224
Tru9I	TTAA	5 cut(s)	36, 434, 954, 984, 1224
TscAI	CASTG	3 cut(s)	636, 676, 1000
TseFI	GTSAC	2 cut(s)	593, 662
TseI	GCWGC	1 cut(s)	1197
Tsp45I	GTSAC	2 cut(s)	593, 662
TspDTI	ATGAA	1 cut(s)	843
TspGWI	ACGGA	2 cut(s)	560, 801
TspRI	CASTG	3 cut(s)	636, 676, 1000
Van91I	CCANNNNNTGG	1 cut(s)	57
XapI	RAATTY	1 cut(s)	471
XspI	CTAG	3 cut(s)	32, 860, 1016
ZrmI	AGTACT	1 cut(s)	1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.