Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002327

Physical Location & Seq

Genomic Coordinates Reverse (-)

60166391 .. 60172474

Gene Structure 6084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG379900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2259 bp

ATGTGGAACTCACGCGCTCCGGTCGCCGTACTTGCTGCTCTTCTCTACTCAGTAGCTCTGGTCTCTGCTCAGGGATCTAGTCAATGGAAAACACTCACAGGAGATCCGCCTTTGGTCATAGCACGAGGGGGCTTTTCAGGACTCTTTCCTGGTTTCAGTTCTATAGCTTACAATTTGGCATTGCTCACTAGTGTACCAGATGTGGTATTATATTGTGATGTCCAACTAACAAAGGATGCAGCTGGAATCTGCTTTCCAGATTTGCTGCTGAATAACAATTCGAATGTTGATCAAATGTTTCCAAATAAAGAAAAAACTTACCCGGTTGATGGAGTTCCGACTAAAGGGTGGTTTAGCATTGACTATACTCTCAAAGACCTTGCAAATGTTATTGTTACTCAGGGAGTATATACTCGATCTAACAAGTTTGATGGCAATATGTACCCAATTCTCACCGTAGAAGATGTGGCTGCTCAATTCAGACCACCAGGCTTATGGTTGAATATTGAGAACAATATATTCTTCATGCAACACAACTTGAGTATGAGAAACTATGTGATTTCTGTATCAAAGAAAGTGTTTGTCAATTTTATCTCATCACCAGAGGTGGATTTCCTGAAAAGTATTGAAGCACGTGTTAATCCAAGCACAACAAAGTTGATCTTTAAGTTTCTTGATGAAGCTGAGATTGAGCCTTCGACAAACCAGACTTATGGTTCTCTGTTGAAGAATCTCACATTTATCAAGACATTTGCCTCTGGAATTATAGTTCCTAAAACTTACATATGGCCTGTCACTGCAGACAATTATTTAGAACCTCACACTACAATTGTTTCGGATGCTCATAAAGCAGGGCTCACAGTATTTGTGTCAGGTTTGTATAATGACGTGCCATTCCCATTCAATTACAGTTATGATCCAGTTTCTGAGCACCTGTCATTCTTTGACAACGGCGATTTCAGTGTTGACGGTGTGCTGTCTGACTTTCCCATAACTCCATCAGCAGCCATAGATTGTTATGCTCACCCAGAAAAGAATGCTTCAGTACAAGATAAACCTTTGGTTATCTCGAAAGACGGAGATAGCGGAGACTACCCTGGCTGTACTAACGTGGCATATACGCATGCAATTGCAGATGGTGTAGATGTACTCGATTGTAACGTCCAAATGTCCAAGGACGGGATACCATTTTGCTCGAGCTCTATAAATCTTATTGATAGCACAACAGTTGCTCAATCAAGCTTTAGCAGCTACACAATGGTTGTTCCAGAAATTAAGGTTGGCAGTGGAATATATACCTTTAGCCTGACATGGGATCAGATCAAAACACTACAACCAACTTTATCAAGCCCAGAGAAAAATTACAACTTGCTCAGGAATCCAAGATTCAAGAGTGTTGGCACTTACTTGAAACTATCTGAATTTTTGACCTTGGCAAAGAATTCGAGTTCTCTATTAGGTGTCTTAATTGGCATAGAGCATGCGGCATATCTTGTAAAGAAGCAGGGACTACGTGTAACAGATGCAGTCATGACTGAGTTGAAGAACGCTGGTTTTGGTAATCAGACAGCCCTAGATGTCATGATTCAGTCCAGCAATAGTTCTGTTCTGATGAAATTTAAGGAGAAAAGCAAGTATAAACTCGTTTACAAGATTGAAGAGGACATTGGTGATGCCCCTGATAAAACTGTTCAGGACATCAAGAAATTTGCCGATGCTGTGGTCATCAACAAGGCCTCTGTCTTGCCAGAAAATCAGTTATTCGTCGATGGAGCAACCAATGTTGTAAAGAAGTTTCATGCATTTAAACTACCTGTTTATGTTGAACTCTTCAGCAATGAGTTTGTATCTCAAGCATGGGACTACTTCTCAGATGCATCCGTGGAGATCAATTCATTTGTGACGGGGGCTGAAGTTGATGGTGTTATCACAGGCTTCCCCAAAACAGCTGCTAGATACAAAAGAAACCGGTGTGTAAGTTATAAAGTGACACCTACCTACATGAGCCCTGTTCTGCCAGGCAGTCTGATACAAGTTGTTTCTCCTGCTTACTTGCCACCTGCTGAGGCCCCAAATCCAGCCCTGACAGAGAGTGATGTGGTTGAGCCGCCTTTGCCGTCCGCCGAAACGGCCTCAGCTCCTGGGCCAGCTGGTGGATCTACAGTACCGCCACCACGGCCGAACGGGCAGCCTAAGACTGCTGCGTGCTTCTTTCTCTCAACTCTGGCTATGCTAGTTGCCACTCTTTTTCTTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0006968 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009505 GO:0009506 GO:0009653 GO:0009664 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010026 GO:0010052 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0010383 GO:0010441 GO:0010442 GO:0016020 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030243 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042578 GO:0043167 GO:0043169 GO:0043170 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0046872 GO:0048364 GO:0048367 GO:0048468 GO:0048469 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0052541 GO:0055044 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

752

Amino Acids

82.04

Weight (kDa)

5.26

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	72 - 331	1.5e-06	Glycerophosphoryl diester phosphodiesterase family
GDPD	PF03009	360 - 648	1.6e-22	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66970 AT1G66970 AT1G66970 AT4G26690
fragaria_vesca	FvH4_3g13670 FvH4_3g13670 FvH4_3g13670 FvH4_3g30290 FvH4_3g30290
malus_domestica	MD03G1190400.v1.1 MD11G1207100.v1.1
prunus_persica	Prupe.4G228400_v2.0.a1 Prupe.4G228400_v2.0.a1
pyrus_communis	pycom03g14330 pycom03g14370 pycom11g18010
rosa_chinensis	RchiOBHm_Chr5g0022921 RchiOBHm_Chr5g0056171
rosa_laevigata	RLG00000032682 RLG00000035057 RLG00000035060
rosa_multiflora	Rmu_sc0000680.1_g000027 Rmu_sc0001787.1_g000024 Rmu_sc0002675.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024130 Rroxscaffold_1G00056420
rosa_rugosa	Rorug05G0075500 Rorug05G0297800 Rorug05G0297800
rosa_samantha	Rh5AG162000 Rh5AG368900 Rh5BG161200 Rh5BG379900 Rh5CG175800 Rh5CG402700 Rh5DG162500 Rh5DG392700 Rh5DG392900
rosa_wichuraiana	Rw0G004450 Rw0G012690 Rw5G014580 Rw5G034630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1983
AarI	CACCTGC	1 cut(s)	2068
Acc36I	ACCTGC	1 cut(s)	2068
AccB7I	CCANNNNNTGG	1 cut(s)	2153
AccII	CGCG	1 cut(s)	15
AciI	CCGC	6 cut(s)	107, 1086, 1484, 2108, 2121, 2168
AclWI	GGATC	5 cut(s)	82, 98, 911, 1323, 2164
AcoI	YGGCCR	1 cut(s)	2177
AcsI	RAATTY	4 cut(s)	1421, 1441, 1616, 1706
AcuI	CTGAAG	3 cut(s)	1026, 1816, 1932
AcvI	CACGTG	1 cut(s)	635
AfaI	GTAC	7 cut(s)	30, 195, 443, 1047, 1105, 1149, 2166
AfiI	CCNNNNNNNGG	5 cut(s)	329, 344, 1179, 1312, 2153
AflIII	ACRYGT	2 cut(s)	634, 1513
AgeI	ACCGGT	1 cut(s)	1968
AgsI	TTSAA	9 cut(s)	502, 629, 727, 904, 1390, 1411, 1543, 1658, 1826
AhlI	ACTAGT	1 cut(s)	188
AjiI	CACGTC	1 cut(s)	889
AjnI	CCWGG	5 cut(s)	148, 487, 1096, 2017, 2140
AjuI	GAANNNNNNNTTGG	4 cut(s)	1263, 1295, 1650, 1682
AloI	GAACNNNNNNTCC	2 cut(s)	753, 785
Alw21I	GWGCWC	2 cut(s)	933, 1202
Alw26I	GTCTC	2 cut(s)	67, 1083
AlwI	GGATC	5 cut(s)	82, 98, 911, 1323, 2164
AlwNI	CAGNNNCTG	2 cut(s)	926, 2141
Ama87I	CYCGRG	1 cut(s)	1195
AoxI	GGCC	6 cut(s)	788, 1734, 2067, 2130, 2144, 2177
ApeKI	GCWGC	9 cut(s)	35, 239, 265, 470, 1004, 1248, 1949, 2188, 2201
ApoI	RAATTY	4 cut(s)	1421, 1441, 1616, 1706
AsiGI	ACCGGT	1 cut(s)	1968
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	2068, 2144
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	4 cut(s)	445, 591, 1016, 1682
AsuII	TTCGAA	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	1195
BaeI	ACNNNNGTAYC	2 cut(s)	177, 210
BanII	GRGCYC	3 cut(s)	858, 1202, 2009
BauI	CACGAG	1 cut(s)	123
BbrPI	CACGTG	1 cut(s)	635
Bbv12I	GWGCWC	2 cut(s)	933, 1202
BbvCI	CCTCAGC	2 cut(s)	2064, 2134
BbvI	GCAGC	9 cut(s)	22, 251, 252, 457, 1016, 1260, 1936, 2188, 2200
BccI	CCATC	6 cut(s)	323, 425, 1006, 1130, 1763, 1913
BceAI	ACGGC	5 cut(s)	11, 967, 2101, 2145, 2192
BcgI	CGANNNNNNTGC	2 cut(s)	1425, 1459
BciT130I	CCWGG	5 cut(s)	150, 489, 1098, 2019, 2142
BciVI	GTATCC	1 cut(s)	1176
BclI	TGATCA	1 cut(s)	289
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	2 cut(s)	67, 1083
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	5 cut(s)	78, 189, 1574, 1953, 2234
BfmI	CTRYAG	3 cut(s)	162, 798, 2160
BfuAI	ACCTGC	1 cut(s)	2068
BfuI	GTATCC	1 cut(s)	1176
BglI	GCCNNNNNGGC	3 cut(s)	2129, 2176, 2185
Bme1390I	CCNGG	6 cut(s)	150, 323, 489, 1098, 2019, 2142
BmeT110I	CYCGRG	1 cut(s)	1195
BmgBI	CACGTC	1 cut(s)	889
BmgT120I	GGNCC	2 cut(s)	2068, 2144
BmiI	GGNNCC	1 cut(s)	2070
BmrFI	CCNGG	6 cut(s)	150, 323, 489, 1098, 2019, 2142
BmsI	GCATC	7 cut(s)	226, 829, 1513, 1663, 1705, 1864, 1886
Bpu10I	CCTNAGC	4 cut(s)	69, 1373, 2064, 2134
Bpu14I	TTCGAA	1 cut(s)	281
BpuEI	CTTGAG	2 cut(s)	559, 1836
BpuMI	CCSGG	1 cut(s)	323
BsaAI	YACGTR	2 cut(s)	635, 1514
BsaI	GGTCTC	1 cut(s)	67
BsaJI	CCNNGG	6 cut(s)	1096, 1173, 1431, 1881, 2141, 2174
BsaWI	WCCGGW	2 cut(s)	19, 1968
Bsc4I	CCNNNNNNNGG	5 cut(s)	329, 344, 1179, 1312, 2153
Bse118I	RCCGGY	1 cut(s)	1968
Bse1I	ACTGG	1 cut(s)	920
Bse3DI	GCAATG	2 cut(s)	179, 1843
BseBI	CCWGG	5 cut(s)	150, 489, 1098, 2019, 2142
BseDI	CCNNGG	6 cut(s)	1096, 1173, 1431, 1881, 2141, 2174
BseGI	GGATG	3 cut(s)	241, 844, 1877
BseLI	CCNNNNNNNGG	5 cut(s)	329, 344, 1179, 1312, 2153
BseMI	GCAATG	2 cut(s)	179, 1843
BseNI	ACTGG	1 cut(s)	920
BseX3I	CGGCCG	1 cut(s)	2177
BseXI	GCAGC	9 cut(s)	22, 251, 252, 457, 1016, 1260, 1936, 2188, 2200
Bsh1236I	CGCG	1 cut(s)	15
Bsh1285I	CGRYCG	2 cut(s)	24, 2180
BshFI	GGCC	6 cut(s)	790, 1736, 2069, 2132, 2146, 2179
BshTI	ACCGGT	1 cut(s)	1968
BsiEI	CGRYCG	2 cut(s)	24, 2180
BsiHKAI	GWGCWC	2 cut(s)	933, 1202
BsiHKCI	CYCGRG	1 cut(s)	1195
BsiSI	CCGG	3 cut(s)	20, 323, 1969
BslFI	GGGAC	2 cut(s)	1521, 1874
BslI	CCNNNNNNNGG	5 cut(s)	329, 344, 1179, 1312, 2153
BsmAI	GTCTC	2 cut(s)	67, 1083
BsmFI	GGGAC	2 cut(s)	1521, 1874
BsmI	GAATGC	1 cut(s)	1042
BsnI	GGCC	6 cut(s)	790, 1736, 2069, 2132, 2146, 2179
Bso31I	GGTCTC	1 cut(s)	67
BsoBI	CYCGRG	1 cut(s)	1195
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1286I	GDGCHC	4 cut(s)	858, 933, 1202, 2009
BspACI	CCGC	6 cut(s)	107, 1086, 1484, 2108, 2121, 2168
BspANI	GGCC	6 cut(s)	790, 1736, 2069, 2132, 2146, 2179
BspFNI	CGCG	1 cut(s)	15
BspHI	TCATGA	2 cut(s)	1530, 1581
BspLI	GGNNCC	1 cut(s)	2070
BspMAI	CTGCAG	1 cut(s)	802
BspMI	ACCTGC	1 cut(s)	2068
BspPI	GGATC	5 cut(s)	82, 98, 911, 1323, 2164
BspQI	GCTCTTC	1 cut(s)	45
BspT104I	TTCGAA	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	67
BsrDI	GCAATG	2 cut(s)	179, 1843
BsrFI	RCCGGY	1 cut(s)	1968
BsrI	ACTGG	1 cut(s)	920
BssAI	RCCGGY	1 cut(s)	1968
BssECI	CCNNGG	6 cut(s)	1096, 1173, 1431, 1881, 2141, 2174
BssSI	CACGAG	1 cut(s)	123
BssT1I	CCWWGG	2 cut(s)	1173, 1431
Bst2BI	CACGAG	1 cut(s)	123
Bst2UI	CCWGG	5 cut(s)	150, 489, 1098, 2019, 2142
Bst4CI	ACNGT	7 cut(s)	457, 862, 911, 971, 1228, 1690, 2164
Bst6I	CTCTTC	3 cut(s)	45, 1653, 1835
BstBAI	YACGTR	2 cut(s)	635, 1514
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	4 cut(s)	1125, 1482, 2148, 2206
BstDSI	CCRYGG	2 cut(s)	1881, 2174
BstF5I	GGATG	3 cut(s)	241, 844, 1877
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	17
BstMAI	GTCTC	2 cut(s)	67, 1083
BstMCI	CGRYCG	2 cut(s)	24, 2180
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 32, 848, 1248, 2113, 2129, 2176, 2185
BstNI	CCWGG	5 cut(s)	150, 489, 1098, 2019, 2142
BstNSI	RCATGY	2 cut(s)	1127, 1484
BstSCI	CCNGG	6 cut(s)	148, 321, 487, 1096, 2017, 2140
BstSFI	CTRYAG	3 cut(s)	162, 798, 2160
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	9 cut(s)	22, 251, 252, 457, 1016, 1260, 1936, 2188, 2200
BstX2I	RGATCY	3 cut(s)	74, 103, 2156
BstXI	CCANNNNNNTGG	2 cut(s)	495, 713
BstYI	RGATCY	3 cut(s)	74, 103, 2156
BstZI	CGGCCG	1 cut(s)	2177
BsuI	GTATCC	1 cut(s)	1176
BsuRI	GGCC	6 cut(s)	790, 1736, 2069, 2132, 2146, 2179
BtgI	CCRYGG	2 cut(s)	1881, 2174
BtrI	CACGTC	1 cut(s)	889
BtsCI	GGATG	3 cut(s)	241, 844, 1877
BtsI	GCAGTG	2 cut(s)	795, 1291
BtsIMutI	CAGTG	3 cut(s)	795, 967, 1291
BveI	ACCTGC	1 cut(s)	2068
Cac8I	GCNNGC	4 cut(s)	1125, 1482, 2148, 2206
CaiI	CAGNNNCTG	2 cut(s)	926, 2141
CciI	TCATGA	2 cut(s)	1530, 1581
CfoI	GCGC	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	1968
Cfr13I	GGNCC	2 cut(s)	2068, 2144
Csp6I	GTAC	7 cut(s)	29, 194, 442, 1046, 1104, 1148, 2165
CspAI	ACCGGT	1 cut(s)	1968
CviAII	CATG	9 cut(s)	526, 1124, 1311, 1481, 1531, 1582, 1799, 1857, 2002
CviQI	GTAC	7 cut(s)	29, 194, 442, 1046, 1104, 1148, 2165
DraI	TTTAAA	1 cut(s)	1807
EaeI	YGGCCR	1 cut(s)	2177
EagI	CGGCCG	1 cut(s)	2177
Eam1104I	CTCTTC	3 cut(s)	45, 1653, 1835
EarI	CTCTTC	3 cut(s)	45, 1653, 1835
EciI	GGCGGA	2 cut(s)	96, 2110
Ecl136II	GAGCTC	1 cut(s)	1200
EclXI	CGGCCG	1 cut(s)	2177
Eco130I	CCWWGG	2 cut(s)	1173, 1431
Eco147I	AGGCCT	1 cut(s)	1736
Eco24I	GRGCYC	3 cut(s)	858, 1202, 2009
Eco31I	GGTCTC	1 cut(s)	67
Eco52I	CGGCCG	1 cut(s)	2177
Eco53kI	GAGCTC	1 cut(s)	1200
Eco57I	CTGAAG	3 cut(s)	1026, 1816, 1932
Eco72I	CACGTG	1 cut(s)	635
Eco88I	CYCGRG	1 cut(s)	1195
EcoICRI	GAGCTC	1 cut(s)	1200
EcoO109I	RGGNCCY	1 cut(s)	2068
EcoRI	GAATTC	1 cut(s)	1441
EcoRII	CCWGG	5 cut(s)	148, 487, 1096, 2017, 2140
EcoT14I	CCWWGG	2 cut(s)	1173, 1431
EcoT22I	ATGCAT	2 cut(s)	1804, 1879
EcoT38I	GRGCYC	3 cut(s)	858, 1202, 2009
ErhI	CCWWGG	2 cut(s)	1173, 1431
FaeI	CATG	9 cut(s)	529, 1127, 1314, 1484, 1534, 1585, 1802, 1860, 2005
FalI	AAGNNNNNCTT	2 cut(s)	647, 679
FaqI	GGGAC	2 cut(s)	1521, 1874
FatI	CATG	9 cut(s)	525, 1123, 1310, 1480, 1530, 1581, 1798, 1856, 2001
FauNDI	CATATG	1 cut(s)	785
FbaI	TGATCA	1 cut(s)	289
FokI	GGATG	3 cut(s)	248, 851, 1864
FriOI	GRGCYC	3 cut(s)	858, 1202, 2009
FspBI	CTAG	5 cut(s)	78, 189, 1574, 1953, 2234
GlaI	GCGC	1 cut(s)	16
HaeIII	GGCC	6 cut(s)	790, 1736, 2069, 2132, 2146, 2179
HapII	CCGG	3 cut(s)	20, 323, 1969
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	9 cut(s)	529, 1127, 1314, 1484, 1534, 1585, 1802, 1860, 2005
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HincII	GTYRAC	1 cut(s)	967
HindII	GTYRAC	1 cut(s)	967
HindIII	AAGCTT	1 cut(s)	1240
HinfI	GANTC	6 cut(s)	141, 246, 730, 1378, 1386, 1585
HpaII	CCGG	3 cut(s)	20, 323, 1969
HphI	GGTGA	4 cut(s)	445, 591, 1016, 1682
Hpy166II	GTNNAC	3 cut(s)	194, 967, 1648
Hpy8I	GTNNAC	3 cut(s)	194, 967, 1648
Hpy99I	CGWCG	1 cut(s)	1769
HpyAV	CCTTC	1 cut(s)	705
HpyCH4III	ACNGT	7 cut(s)	457, 862, 911, 971, 1228, 1690, 2164
HpyCH4IV	ACGT	5 cut(s)	634, 888, 1110, 1161, 1513
HpyCH4V	TGCA	9 cut(s)	239, 383, 529, 800, 1127, 1133, 1526, 1802, 1877
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 32, 848, 1248, 2113, 2129, 2176, 2185
HpySE526I	ACGT	5 cut(s)	634, 888, 1110, 1161, 1513
Hsp92II	CATG	9 cut(s)	529, 1127, 1314, 1484, 1534, 1585, 1802, 1860, 2005
HspAI	GCGC	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	289
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	3 cut(s)	22, 1772, 2143
Lsp1109I	GCAGC	9 cut(s)	22, 251, 252, 457, 1016, 1260, 1936, 2188, 2200
LweI	GCATC	7 cut(s)	226, 829, 1513, 1663, 1705, 1864, 1886
MaeI	CTAG	5 cut(s)	78, 189, 1574, 1953, 2234
MaeII	ACGT	5 cut(s)	634, 888, 1110, 1161, 1513
MaeIII	GTNAC	6 cut(s)	394, 793, 1157, 1516, 1900, 1987
MboII	GAAGA	7 cut(s)	32, 473, 514, 739, 1555, 1670, 1822
MfeI	CAATTG	2 cut(s)	828, 1128
MflI	RGATCY	3 cut(s)	74, 103, 2156
MhlI	GDGCHC	4 cut(s)	858, 933, 1202, 2009
MlyI	GAGTC	1 cut(s)	135
MmeI	TCCRAC	2 cut(s)	247, 362
MnlI	CCTC	8 cut(s)	119, 598, 766, 828, 1654, 1747, 2059, 2143
Mph1103I	ATGCAT	2 cut(s)	1804, 1879
MseI	TTAA	6 cut(s)	639, 666, 1275, 1466, 1620, 1806
MspA1I	CMGCKG	3 cut(s)	242, 1949, 2150
MspI	CCGG	3 cut(s)	20, 323, 1969
MspR9I	CCNGG	6 cut(s)	150, 323, 489, 1098, 2019, 2142
MunI	CAATTG	2 cut(s)	828, 1128
Mva1269I	GAATGC	1 cut(s)	1042
MvaI	CCWGG	5 cut(s)	150, 489, 1098, 2019, 2142
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	8 cut(s)	23, 32, 848, 1248, 2113, 2129, 2176, 2185
NciI	CCSGG	1 cut(s)	323
NdeI	CATATG	1 cut(s)	785
NlaIII	CATG	9 cut(s)	529, 1127, 1314, 1484, 1534, 1585, 1802, 1860, 2005
NlaIV	GGNNCC	1 cut(s)	2070
NmuCI	GTSAC	3 cut(s)	793, 1900, 1987
NsiI	ATGCAT	2 cut(s)	1804, 1879
NspI	RCATGY	2 cut(s)	1127, 1484
NspV	TTCGAA	1 cut(s)	281
PaeI	GCATGC	2 cut(s)	1127, 1484
PaeR7I	CTCGAG	1 cut(s)	1195
PagI	TCATGA	2 cut(s)	1530, 1581
PaqCI	CACCTGC	1 cut(s)	2068
PceI	AGGCCT	1 cut(s)	1736
PciSI	GCTCTTC	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	1158
PctI	GAATGC	1 cut(s)	1042
PfeI	GAWTC	5 cut(s)	246, 730, 1378, 1386, 1585
PflMI	CCANNNNNTGG	1 cut(s)	2153
PinAI	ACCGGT	1 cut(s)	1968
PleI	GAGTC	1 cut(s)	135
PmaCI	CACGTG	1 cut(s)	635
PmlI	CACGTG	1 cut(s)	635
PpsI	GAGTC	1 cut(s)	135
Ppu21I	YACGTR	2 cut(s)	635, 1514
PsiI	TTATAA	1 cut(s)	1983
Psp124BI	GAGCTC	1 cut(s)	1202
Psp6I	CCWGG	5 cut(s)	148, 487, 1096, 2017, 2140
PspCI	CACGTG	1 cut(s)	635
PspGI	CCWGG	5 cut(s)	148, 487, 1096, 2017, 2140
PspN4I	GGNNCC	1 cut(s)	2070
PspPI	GGNCC	2 cut(s)	2068, 2144
PspXI	VCTCGAGB	1 cut(s)	1195
PstI	CTGCAG	1 cut(s)	802
PstNI	CAGNNNCTG	2 cut(s)	926, 2141
PsuI	RGATCY	3 cut(s)	74, 103, 2156
PvuII	CAGCTG	3 cut(s)	242, 1949, 2150
RsaI	GTAC	7 cut(s)	30, 195, 443, 1047, 1105, 1149, 2166
RsaNI	GTAC	7 cut(s)	29, 194, 442, 1046, 1104, 1148, 2165
SacI	GAGCTC	1 cut(s)	1202
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	6 cut(s)	639, 666, 1275, 1466, 1620, 1806
Sau96I	GGNCC	2 cut(s)	2068, 2144
SchI	GAGTC	1 cut(s)	135
ScrFI	CCNGG	6 cut(s)	150, 323, 489, 1098, 2019, 2142
SduI	GDGCHC	4 cut(s)	858, 933, 1202, 2009
SfaNI	GCATC	7 cut(s)	226, 829, 1513, 1663, 1705, 1864, 1886
SfcI	CTRYAG	3 cut(s)	162, 798, 2160
Sfr274I	CTCGAG	1 cut(s)	1195
SfuI	TTCGAA	1 cut(s)	281
SlaI	CTCGAG	1 cut(s)	1195
SmlI	CTYRAG	3 cut(s)	538, 1195, 1851
SmoI	CTYRAG	3 cut(s)	538, 1195, 1851
SpeI	ACTAGT	1 cut(s)	188
SphI	GCATGC	2 cut(s)	1127, 1484
SseBI	AGGCCT	1 cut(s)	1736
SsiI	CCGC	6 cut(s)	107, 1086, 1484, 2108, 2121, 2168
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	5 cut(s)	78, 189, 1574, 1953, 2234
SstI	GAGCTC	1 cut(s)	1202
StuI	AGGCCT	1 cut(s)	1736
StyD4I	CCNGG	6 cut(s)	148, 321, 487, 1096, 2017, 2140
StyI	CCWWGG	2 cut(s)	1173, 1431
TaaI	ACNGT	7 cut(s)	457, 862, 911, 971, 1228, 1690, 2164
TaiI	ACGT	5 cut(s)	637, 891, 1113, 1164, 1516
TaqI	TCGA	8 cut(s)	281, 415, 698, 1070, 1152, 1196, 1445, 1767
TatI	WGTACW	3 cut(s)	1045, 1103, 1147
TauI	GCSGC	2 cut(s)	1487, 2110
TfiI	GAWTC	5 cut(s)	246, 730, 1378, 1386, 1585
Tru1I	TTAA	6 cut(s)	639, 666, 1275, 1466, 1620, 1806
Tru9I	TTAA	6 cut(s)	639, 666, 1275, 1466, 1620, 1806
TscAI	CASTG	3 cut(s)	802, 967, 1291
TseFI	GTSAC	3 cut(s)	793, 1900, 1987
TseI	GCWGC	9 cut(s)	35, 239, 265, 470, 1004, 1248, 1949, 2188, 2201
Tsp45I	GTSAC	3 cut(s)	793, 1900, 1987
TspDTI	ATGAA	5 cut(s)	514, 693, 1628, 1787, 1884
TspGWI	ACGGA	2 cut(s)	1092, 1870
TspRI	CASTG	3 cut(s)	802, 967, 1291
Van91I	CCANNNNNTGG	1 cut(s)	2153
XapI	RAATTY	4 cut(s)	1421, 1441, 1616, 1706
XceI	RCATGY	2 cut(s)	1127, 1484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	492
XhoI	CTCGAG	1 cut(s)	1195
XspI	CTAG	5 cut(s)	78, 189, 1574, 1953, 2234
Zsp2I	ATGCAT	2 cut(s)	1804, 1879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.