Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002327

Physical Location & Seq

Genomic Coordinates Forward (+)

6499780 .. 6501690

Gene Structure 1911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0075500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGGTTCATCTTCTTCACCATATTTGATCAACTTCCTCCTCATCTTACTATCAATCATCATCCCAAAAGCGCTTGGGTGCTACAGTGCAATCTTCAGCTTTGGTGATTCGATTACTGATACTGGCAACTTATATATCAGCTCCAAGAACAGTTCTTTCCACTTCTTCTTCCCTCCATATGGGGAGACCTACTTTCATCGCCCCACCGGACGATGCTCCGATGGTCGCTTGATCATAGACTTCATTGCTGAGTATCTGGGACTTCCACATGTTAGACCTTATCTTGAACTCGAGAGCAATGCAAGTGCTCAAAACTTCAAAGGGGCAGTGAATTTTGCGATGGTAGGAGCCACGGCGCTTGATGCGGCATTTCTTGCAGCAATGGGAGATCATAATGATTATACAAACAGCTCTCTAAGAACTCAATTGGATTGGTTTAAAGAAATGCTGCCTTCTTTATGCAATACATCTTCAAATTGCAATAAACTTCTCTCCAGCTCCCTAGTTCTTGTGGGAGAGATTGGAGGCAACGATTACAACGATGCATTGTTGGCAGGGAAAAGTATAGAACAGGTTCAAACATATGTACCATTAGTAATAGAAGAAATCTCTACAACAATCAAAGAGTTAATTGAGCTTGGGGCAATGACACTTATGGTACCTGGAAACTTTCCAATCGGTTGCCTTCCCATTTATCTTACAAAATTTCGGACTTCAGATGAAAAGCAGTACGACTCCTCGACAGGTTGTCTGAATTGGTTAAACAAGTTTGCTGAATATCACAATGACCAGCTTCAAATAGAACTAAGTCAGGTTCAAAGGCTTCACCCCAATGTCAACATCATTTATGCAGATTATTACAATGCTGTGATGCATTTCTATCATTCTCCAGACCAATTTGGATTTATTGGGGGAACAGTCGAAGCATGCTGTGGTGGGGGAGGACCATACAATTACAACTCATCGGCACAATGTGGCTCTCTGGAGGCAAGTGCTTGTGAAAACCCTGTACAGTTTATCAACTGGGATGGTATACACTTTACTGAAGCAGCATATAGGTGGATAGCCAAAGGTTTATTGAGAGGCAAATTAATACAGCATTCCCAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0006968 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009505 GO:0009506 GO:0009653 GO:0009664 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010026 GO:0010052 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0010383 GO:0010441 GO:0010442 GO:0016020 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030243 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042578 GO:0043167 GO:0043169 GO:0043170 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0046872 GO:0048364 GO:0048367 GO:0048468 GO:0048469 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0052541 GO:0055044 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

370

Amino Acids

40.98

Weight (kDa)

5.14

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	31 - 358	2.6e-30	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66970 AT1G66970 AT1G66970 AT4G26690
fragaria_vesca	FvH4_3g13670 FvH4_3g13670 FvH4_3g13670 FvH4_3g30290 FvH4_3g30290
malus_domestica	MD03G1190400.v1.1 MD11G1207100.v1.1
prunus_persica	Prupe.4G228400_v2.0.a1 Prupe.4G228400_v2.0.a1
pyrus_communis	pycom03g14330 pycom03g14370 pycom11g18010
rosa_chinensis	RchiOBHm_Chr5g0022921 RchiOBHm_Chr5g0056171
rosa_laevigata	RLG00000032682 RLG00000035057 RLG00000035060
rosa_multiflora	Rmu_sc0000680.1_g000027 Rmu_sc0001787.1_g000024 Rmu_sc0002675.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024130 Rroxscaffold_1G00056420
rosa_rugosa	Rorug05G0075500 Rorug05G0297800 Rorug05G0297800
rosa_samantha	Rh5AG162000 Rh5AG368900 Rh5BG161200 Rh5BG379900 Rh5CG175800 Rh5CG402700 Rh5DG162500 Rh5DG392700 Rh5DG392900
rosa_wichuraiana	Rw0G004450 Rw0G012690 Rw5G014580 Rw5G034630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	658
AccB1I	GGYRCC	1 cut(s)	658
AccI	GTMKAC	1 cut(s)	1033
AciI	CCGC	1 cut(s)	365
AcsI	RAATTY	2 cut(s)	331, 704
AcuI	CTGAAG	3 cut(s)	79, 699, 1065
AdeI	CACNNNGTG	1 cut(s)	974
AfaI	GTAC	4 cut(s)	588, 660, 731, 1011
AfeI	AGCGCT	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	6 cut(s)	287, 319, 474, 578, 797, 818
AhdI	GACNNNNNGTC	1 cut(s)	747
AjnI	CCWGG	1 cut(s)	661
AluBI	AGCT	6 cut(s)	99, 141, 411, 498, 637, 793
AluI	AGCT	6 cut(s)	99, 141, 411, 498, 637, 793
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	179
Ama87I	CYCGRG	1 cut(s)	290
Aor51HI	AGCGCT	1 cut(s)	72
ApeKI	GCWGC	3 cut(s)	377, 448, 1049
ApoI	RAATTY	2 cut(s)	331, 704
AseI	ATTAAT	1 cut(s)	1091
Asp700I	GAANNNNTTC	1 cut(s)	573
Asp718I	GGTACC	1 cut(s)	658
AspLEI	GCGC	2 cut(s)	73, 358
AspS9I	GGNCC	1 cut(s)	944
AsuHPI	GGTGA	3 cut(s)	9, 116, 818
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	944
BaeI	ACNNNNGTAYC	2 cut(s)	570, 603
BanI	GGYRCC	1 cut(s)	658
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	3 cut(s)	389, 435, 1061
BccI	CCATC	3 cut(s)	215, 334, 1022
BceAI	ACGGC	1 cut(s)	369
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BciT130I	CCWGG	1 cut(s)	663
BclI	TGATCA	2 cut(s)	27, 231
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	503
BfmI	CTRYAG	1 cut(s)	82
BfoI	RGCGCY	2 cut(s)	74, 359
BisI	GCNGC	4 cut(s)	366, 378, 449, 1050
BlsI	GCNGC	4 cut(s)	367, 379, 450, 1051
Bme1390I	CCNGG	1 cut(s)	663
Bme18I	GGWCC	1 cut(s)	944
BmeRI	GACNNNNNGTC	1 cut(s)	747
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	944
BmiI	GGNNCC	2 cut(s)	349, 660
BmrFI	CCNGG	1 cut(s)	663
BmrI	ACTGGG	2 cut(s)	1033, 1099
BmsI	GCATC	4 cut(s)	203, 352, 532, 861
BmuI	ACTGGG	2 cut(s)	1033, 1099
BpmI	CTGGAG	3 cut(s)	478, 873, 1004
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	3 cut(s)	127, 1028, 1105
Bse3DI	GCAATG	4 cut(s)	243, 304, 387, 651
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	2 cut(s)	60, 1033
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	4 cut(s)	243, 304, 387, 651
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	3 cut(s)	127, 1028, 1105
BseRI	GAGGAG	2 cut(s)	29, 727
BseXI	GCAGC	3 cut(s)	389, 435, 1061
BshNI	GGYRCC	1 cut(s)	658
BsiHKAI	GWGCWC	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	273
BsmI	GAATGC	1 cut(s)	1099
Bso31I	GGTCTC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp1407I	TGTACA	1 cut(s)	1009
Bsp143I	GATC	3 cut(s)	27, 231, 388
BspACI	CCGC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	349, 660
BspT107I	GGYRCC	1 cut(s)	658
BspTNI	GGTCTC	1 cut(s)	179
BsrDI	GCAATG	4 cut(s)	243, 304, 387, 651
BsrGI	TGTACA	1 cut(s)	1009
BsrI	ACTGG	3 cut(s)	127, 1028, 1105
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	3 cut(s)	27, 231, 388
BssNAI	GTATAC	1 cut(s)	1034
Bst1107I	GTATAC	1 cut(s)	1034
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	4 cut(s)	86, 152, 919, 1014
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstAUI	TGTACA	1 cut(s)	1009
BstC8I	GCNNGC	1 cut(s)	928
BstDEI	CTNAG	3 cut(s)	249, 416, 806
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	60, 1033
BstH2I	RGCGCY	2 cut(s)	74, 359
BstHHI	GCGC	2 cut(s)	73, 358
BstKTI	GATC	3 cut(s)	30, 234, 391
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	3 cut(s)	27, 231, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 374, 551
BstNI	CCWGG	1 cut(s)	663
BstNSI	RCATGY	2 cut(s)	272, 930
BstSCI	CCNGG	1 cut(s)	661
BstSFI	CTRYAG	1 cut(s)	82
BstV1I	GCAGC	3 cut(s)	389, 435, 1061
BstZ17I	GTATAC	1 cut(s)	1034
BtgI	CCRYGG	1 cut(s)	351
BtgZI	GCGATG	2 cut(s)	182, 353
BtsCI	GGATG	2 cut(s)	60, 1033
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	91, 333
Cac8I	GCNNGC	1 cut(s)	928
CfoI	GCGC	2 cut(s)	73, 358
Cfr13I	GGNCC	1 cut(s)	944
Csp6I	GTAC	4 cut(s)	587, 659, 730, 1010
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	2 cut(s)	269, 927
CviQI	GTAC	4 cut(s)	587, 659, 730, 1010
DdeI	CTNAG	3 cut(s)	249, 416, 806
DpnI	GATC	3 cut(s)	29, 233, 390
DpnII	GATC	3 cut(s)	27, 231, 388
DraI	TTTAAA	1 cut(s)	439
DraIII	CACNNNGTG	1 cut(s)	974
DriI	GACNNNNNGTC	1 cut(s)	747
Eam1105I	GACNNNNNGTC	1 cut(s)	747
Eco31I	GGTCTC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	944
Eco47III	AGCGCT	1 cut(s)	72
Eco57I	CTGAAG	3 cut(s)	79, 699, 1065
Eco88I	CYCGRG	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	661
EcoT22I	ATGCAT	2 cut(s)	547, 876
FaeI	CATG	2 cut(s)	272, 930
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	2 cut(s)	268, 926
FauNDI	CATATG	2 cut(s)	178, 583
FbaI	TGATCA	2 cut(s)	27, 231
FblI	GTMKAC	1 cut(s)	1033
Fnu4HI	GCNGC	4 cut(s)	366, 378, 449, 1050
FokI	GGATG	2 cut(s)	47, 1040
Fsp4HI	GCNGC	4 cut(s)	366, 378, 449, 1050
FspBI	CTAG	1 cut(s)	503
GlaI	GCGC	2 cut(s)	72, 357
GluI	GCNGC	4 cut(s)	366, 378, 449, 1050
GsuI	CTGGAG	3 cut(s)	478, 873, 1004
HaeII	RGCGCY	2 cut(s)	74, 359
HapII	CCGG	1 cut(s)	207
HhaI	GCGC	2 cut(s)	73, 358
Hin1II	CATG	2 cut(s)	272, 930
Hin6I	GCGC	2 cut(s)	71, 356
HinP1I	GCGC	2 cut(s)	71, 356
HincII	GTYRAC	1 cut(s)	838
HindII	GTYRAC	1 cut(s)	838
HinfI	GANTC	2 cut(s)	107, 734
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	3 cut(s)	9, 116, 818
Hpy166II	GTNNAC	2 cut(s)	838, 1034
Hpy188I	TCNGA	4 cut(s)	220, 711, 718, 753
Hpy188III	TCNNGA	4 cut(s)	284, 292, 890, 983
Hpy8I	GTNNAC	2 cut(s)	838, 1034
HpyAV	CCTTC	2 cut(s)	462, 695
HpyCH4III	ACNGT	4 cut(s)	86, 152, 919, 1014
HpyCH4V	TGCA	8 cut(s)	89, 302, 377, 462, 480, 545, 851, 874
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 374, 551
HpyF3I	CTNAG	3 cut(s)	249, 416, 806
Hsp92II	CATG	2 cut(s)	272, 930
HspAI	GCGC	2 cut(s)	71, 356
KpnI	GGTACC	1 cut(s)	662
Ksp22I	TGATCA	2 cut(s)	27, 231
Kzo9I	GATC	3 cut(s)	27, 231, 388
LmnI	GCTCC	4 cut(s)	146, 221, 347, 503
Lsp1109I	GCAGC	3 cut(s)	389, 435, 1061
LweI	GCATC	4 cut(s)	203, 352, 532, 861
MaeI	CTAG	1 cut(s)	503
MalI	GATC	3 cut(s)	29, 233, 390
MboI	GATC	3 cut(s)	27, 231, 388
MboII	GAAGA	7 cut(s)	3, 6, 85, 157, 160, 462, 614
MfeI	CAATTG	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	9 cut(s)	331, 425, 475, 630, 704, 754, 896, 952, 1088
MlyI	GAGTC	1 cut(s)	728
MnlI	CCTC	8 cut(s)	47, 50, 183, 518, 748, 935, 979, 1076
Mph1103I	ATGCAT	2 cut(s)	547, 876
MroXI	GAANNNNTTC	1 cut(s)	573
MseI	TTAA	4 cut(s)	438, 629, 761, 1091
MslI	CAYNNNNRTG	2 cut(s)	831, 1057
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	663
MunI	CAATTG	1 cut(s)	425
Mva1269I	GAATGC	1 cut(s)	1099
MvaI	CCWGG	1 cut(s)	663
MwoI	GCNNNNNNNGC	3 cut(s)	362, 374, 551
NdeI	CATATG	2 cut(s)	178, 583
NdeII	GATC	3 cut(s)	27, 231, 388
NlaIII	CATG	2 cut(s)	272, 930
NlaIV	GGNNCC	2 cut(s)	349, 660
NsiI	ATGCAT	2 cut(s)	547, 876
NspI	RCATGY	2 cut(s)	272, 930
PaeI	GCATGC	1 cut(s)	930
PaeR7I	CTCGAG	1 cut(s)	290
PciI	ACATGT	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PctI	GAATGC	1 cut(s)	1099
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	4 cut(s)	367, 379, 450, 1051
PleI	GAGTC	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	728
PscI	ACATGT	1 cut(s)	268
PshBI	ATTAAT	1 cut(s)	1091
Psp6I	CCWGG	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	2 cut(s)	349, 660
PspPI	GGNCC	1 cut(s)	944
RsaI	GTAC	4 cut(s)	588, 660, 731, 1011
RsaNI	GTAC	4 cut(s)	587, 659, 730, 1010
RseI	CAYNNNNRTG	2 cut(s)	831, 1057
SaqAI	TTAA	4 cut(s)	438, 629, 761, 1091
SatI	GCNGC	4 cut(s)	366, 378, 449, 1050
Sau3AI	GATC	3 cut(s)	27, 231, 388
Sau96I	GGNCC	1 cut(s)	944
SchI	GAGTC	1 cut(s)	728
ScrFI	CCNGG	1 cut(s)	663
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	4 cut(s)	203, 352, 532, 861
SfcI	CTRYAG	1 cut(s)	82
Sfr274I	CTCGAG	1 cut(s)	290
SinI	GGWCC	1 cut(s)	944
SlaI	CTCGAG	1 cut(s)	290
SmiMI	CAYNNNNRTG	2 cut(s)	831, 1057
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	930
Sse9I	AATT	9 cut(s)	331, 425, 475, 630, 704, 754, 896, 952, 1088
SsiI	CCGC	1 cut(s)	365
SspMI	CTAG	1 cut(s)	503
StyD4I	CCNGG	1 cut(s)	661
TaaI	ACNGT	4 cut(s)	86, 152, 919, 1014
TaqI	TCGA	4 cut(s)	110, 291, 740, 921
TasI	AATT	9 cut(s)	331, 425, 475, 630, 704, 754, 896, 952, 1088
TatI	WGTACW	1 cut(s)	1009
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	4 cut(s)	438, 629, 761, 1091
Tru9I	TTAA	4 cut(s)	438, 629, 761, 1091
TscAI	CASTG	2 cut(s)	91, 333
TseI	GCWGC	3 cut(s)	377, 448, 1049
TspDTI	ATGAA	3 cut(s)	185, 232, 735
TspRI	CASTG	2 cut(s)	91, 333
VpaK11BI	GGWCC	1 cut(s)	944
VspI	ATTAAT	1 cut(s)	1091
XapI	RAATTY	2 cut(s)	331, 704
XceI	RCATGY	2 cut(s)	272, 930
XhoI	CTCGAG	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	1033
XmnI	GAANNNNTTC	1 cut(s)	573
XspI	CTAG	1 cut(s)	503
Zsp2I	ATGCAT	2 cut(s)	547, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.