Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002327

Physical Location & Seq

Genomic Coordinates Forward (+)

29970664 .. 30031625

Gene Structure 60962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00024130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2439 bp

ATGGCACCACTTATCGAAGAGACAAGTCCCGACAAAACCCCTCCGCTCGGCTTATCAAAGCCGGCTCAATCCTACAACGTCAAATCTCACACATTTTCCGAGACAACTCCAAACGACGCCGTCGCGATCTTCTCCACTACCAGCTCTGCTGACAGACCTGCCGGCGAGGCTTCTCCGGCAATGTGGAACTCACGCGCTCCGGTCGCCGTACTTGCTGCTCTTCTCTACTCACTAGCTCTGGTCTCTGCTCAGGGATCTAGTCAATGGAAAACACTCACAGGAAAGCCGCCTTTGGTCATAGCACGAGGGGGCTTTTCAGGACTCTTTCCTGGTTTCAGTTCTATAGCTTACAATTTGGCATTGCTCACTAGTGTACAAGATGTGGTATTATATTGTGATGTCCAGCTAACAAAGGATGCAGCTGGAATTTGCTTTCCAGATTTGCTGCTGAATAACAATTCGAATGTTGAACAAATGTTTCCAAATCAGGAAAAAACTTACCGGGTTGATGGAGTTCCGAAAAACGGGTGGTTTAGCATTGACTATACTCTCAAAGACCTTGCAAATGTTGTTGTTACTCAGGGAGTATATACTCGATCTAACAAGTTTGATGGCAATATGTACCCAATTCTCACCGTAGAAGATGTGGGTGTGCAATTCAGACCACCAGGCTTATGGTTGAATATTGAGAACAATATATTCTTCACGCAACACAACTTGAGTATGAGAAACTATGTGCTTTCTGTATCAAAGAAAGTGGTTGTCAATTTTATCTCATCACCAGAGGTGAATTTCCTGAACAGTATTAAAGCACGTGTTAGTCCAAGCACAACAAAGTTGATCTTTAAGTTTCTTGATGAACCTGAGTTTGAGCCTTCGACAAACAAGACTTATGGTTCTCTATTGAAGAATCTCACATTTATCAAGACATTTGCCTCTGGAATTATAGTTCCTAAAACTTACATATGGCCTGTCACTGTGGACAATTATTTAGAACCTCACACTGCCATTGTTTTGGATGCTCATAAAGCAGGGCTAACAGTATTTGTGTCAGGTTTGTATAATGACGTGCCATTCCCCTTCAATTACAGTTATGATCCAGTCACTGAGTGCCTGTCATTCTTCGACAATGGCGATTTCAGTGTTGACGGTGTGCTGTCTGACTTTCCCATAACTCCATCAGCAGCCATAGATTGTTATGCTCATCCAGAAAAGAATGCTTCAGCACCAGATACACTTTTGGTTATCTCGAAAGATGGAGATAGCGGAAACTACCCTGGCTGTACTGACTTGGCGTATATGCATGCAATTGCAGATGGTGTAGATGTACTCGATTGTAACGTCCAAATGTCCAAGGACAGGATACCATTTTGCTCGAGCTCTATAAATCTTATTGATAGCACAACAGTTGCTCAATCAAGCTTTAGCAGCTACACAATGGTTGTTCCAGAAATTAAGGTTGGCAGTGGAATATATACCTTTAGCCTGACATGGGATCAGATCAAAACACTAACAACAACTATATCAAGCCCCCAGAAAAATTACAACTTGCTCAGGAATCCAAGGTTCAAGAATAAAGGCACTTACTTGAAACTATCTGAATTTTTGACCTTGGCAAAGAATTCGAGTTCTCTATCTGGTGTCTTAATTGGCATAGAGTATGCGGCGTATCTTGTAGAGAAGCAGGGACTACTTGTAACAGATGCAGTCATGACTGAGTTGAACAAAGCTGGTTTTAGTAATCAGACAGTCCTAGATGTCATGATTCAGTCCAGCAATAGTTCTGTTCTGATGAAATTTAAGGAGAAAAGCAAGTATAAACTTGTTTACAAGATTGAAGAGGACATTGGTGATGCCCCTGATAAAACTGTTCAGGACATCAAGAAGTTTGCCGATGCTGTGGTCATCAACAAGGCCTCTGTTTTTCCAGAAAATCAGTTATTTGTCGATGGAGCAACCAATGTTGTAAAGAAGTTTCATGGATTTAAACTACCTGTTTATGTTGAACTCTTCAGCAATGAGTTTGTATCTCAAGCATGGGACTTCTTCTCAGATGCATCCGTGGAGATCAATTCATTTGTGACGGGGGCCGAAGTTGATGGTGTTATCACAGGCTTCCCCAAAACAGCTGCTAGATACAAAAGAAACCGGTGTTTAAGTTATAAAGAGACACCTACCTACATGAGCCCTGTTCTGCCAGGCAGTCTGATACAAGTTGTTTCTCCTGCCTACTTGCCACCTGCTGAGGCCCCAAATCCAGCCCTGACAGAGAGTGATGTGGTTGAGCCGCCTTTGCCGTCCGGCGAAACGGCCTTAGCTCCTGGGCCAGCTGGTGGATCTACAGTAACACCACCACGGCCGAACGGGCAGCGTAAGACTGCTGCGTGCTTCTTTCTCTCAACTCTGGCTATGCTAGTTGCCACTCTTTTTCTTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0006968 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009505 GO:0009506 GO:0009653 GO:0009664 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010026 GO:0010052 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0010383 GO:0010441 GO:0010442 GO:0016020 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030243 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042578 GO:0043167 GO:0043169 GO:0043170 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0046872 GO:0048364 GO:0048367 GO:0048468 GO:0048469 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0052541 GO:0055044 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

812

Amino Acids

88.57

Weight (kDa)

5.31

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	420 - 708	2e-21	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66970 AT1G66970 AT1G66970 AT4G26690
fragaria_vesca	FvH4_3g13670 FvH4_3g13670 FvH4_3g13670 FvH4_3g30290 FvH4_3g30290
malus_domestica	MD03G1190400.v1.1 MD11G1207100.v1.1
prunus_persica	Prupe.4G228400_v2.0.a1 Prupe.4G228400_v2.0.a1
pyrus_communis	pycom03g14330 pycom03g14370 pycom11g18010
rosa_chinensis	RchiOBHm_Chr5g0022921 RchiOBHm_Chr5g0056171
rosa_laevigata	RLG00000032682 RLG00000035057 RLG00000035060
rosa_multiflora	Rmu_sc0000680.1_g000027 Rmu_sc0001787.1_g000024 Rmu_sc0002675.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024130 Rroxscaffold_1G00056420
rosa_rugosa	Rorug05G0075500 Rorug05G0297800 Rorug05G0297800
rosa_samantha	Rh5AG162000 Rh5AG368900 Rh5BG161200 Rh5BG379900 Rh5CG175800 Rh5CG402700 Rh5DG162500 Rh5DG392700 Rh5DG392900
rosa_wichuraiana	Rw0G004450 Rw0G012690 Rw5G014580 Rw5G034630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2163
AarI	CACCTGC	1 cut(s)	2248
Acc36I	ACCTGC	2 cut(s)	166, 2248
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	2333
AccBSI	CCGCTC	1 cut(s)	46
AccII	CGCG	2 cut(s)	125, 195
AciI	CCGC	5 cut(s)	44, 287, 1266, 1664, 2288
AclWI	GGATC	4 cut(s)	262, 1091, 1503, 2344
AcoI	YGGCCR	1 cut(s)	2357
AcsI	RAATTY	5 cut(s)	426, 790, 1601, 1621, 1796
AcuI	CTGAAG	2 cut(s)	1206, 1996
AcvI	CACGTG	1 cut(s)	815
AcyI	GRCGYC	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	1110
AfaI	GTAC	5 cut(s)	210, 375, 623, 1285, 1329
AfiI	CCNNNNNNNGG	5 cut(s)	47, 524, 1359, 1492, 2333
AflIII	ACRYGT	1 cut(s)	814
AgeI	ACCGGT	1 cut(s)	2148
AgsI	TTSAA	9 cut(s)	470, 682, 907, 1084, 1570, 1591, 1723, 1838, 2006
AhlI	ACTAGT	1 cut(s)	368
AjiI	CACGTC	1 cut(s)	1069
AjnI	CCWGG	5 cut(s)	328, 667, 1276, 2197, 2320
AjuI	GAANNNNNNNTTGG	4 cut(s)	1443, 1475, 1830, 1862
AloI	GAACNNNNNNTCC	2 cut(s)	933, 965
Alw21I	GWGCWC	1 cut(s)	1382
Alw26I	GTCTC	4 cut(s)	14, 95, 247, 2162
AlwI	GGATC	4 cut(s)	262, 1091, 1503, 2344
AlwNI	CAGNNNCTG	1 cut(s)	1106
Ama87I	CYCGRG	1 cut(s)	1375
AoxI	GGCC	7 cut(s)	968, 1914, 2088, 2247, 2310, 2324, 2357
ApeKI	GCWGC	8 cut(s)	215, 419, 445, 1184, 1428, 2129, 2368, 2381
ApoI	RAATTY	5 cut(s)	426, 790, 1601, 1621, 1796
AsiGI	ACCGGT	1 cut(s)	2148
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	3 cut(s)	2088, 2248, 2324
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	4 cut(s)	625, 771, 799, 1862
AsuII	TTCGAA	1 cut(s)	461
AvaI	CYCGRG	1 cut(s)	1375
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	1382, 2189
BauI	CACGAG	1 cut(s)	303
BbrPI	CACGTG	1 cut(s)	815
Bbv12I	GWGCWC	1 cut(s)	1382
BbvCI	CCTCAGC	1 cut(s)	2244
BbvI	GCAGC	8 cut(s)	202, 431, 432, 1196, 1440, 2116, 2368, 2380
BccI	CCATC	7 cut(s)	503, 605, 1186, 1250, 1310, 1943, 2093
BceAI	ACGGC	5 cut(s)	104, 191, 2281, 2325, 2372
BcgI	CGANNNNNNTGC	2 cut(s)	1605, 1639
BciT130I	CCWGG	5 cut(s)	330, 669, 1278, 2199, 2322
BciVI	GTATCC	1 cut(s)	1356
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	4 cut(s)	14, 95, 247, 2162
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	6 cut(s)	233, 258, 369, 1754, 2133, 2414
BfmI	CTRYAG	2 cut(s)	342, 2340
BfuAI	ACCTGC	2 cut(s)	166, 2248
BfuI	GTATCC	1 cut(s)	1356
BglI	GCCNNNNNGGC	2 cut(s)	167, 2365
Bme1390I	CCNGG	6 cut(s)	330, 503, 669, 1278, 2199, 2322
BmeT110I	CYCGRG	1 cut(s)	1375
BmgBI	CACGTC	1 cut(s)	1069
BmgT120I	GGNCC	3 cut(s)	2088, 2248, 2324
BmiI	GGNNCC	3 cut(s)	6, 2089, 2250
BmrFI	CCNGG	6 cut(s)	330, 503, 669, 1278, 2199, 2322
BmsI	GCATC	7 cut(s)	406, 1009, 1693, 1843, 1885, 2044, 2066
Bpu10I	CCTNAGC	4 cut(s)	249, 1553, 2244, 2314
Bpu14I	TTCGAA	1 cut(s)	461
BpuEI	CTTGAG	2 cut(s)	739, 2016
BpuMI	CCSGG	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	815
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	247
BsaJI	CCNNGG	7 cut(s)	1276, 1353, 1562, 1611, 2061, 2321, 2354
BsaWI	WCCGGW	2 cut(s)	199, 2148
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 524, 1359, 1492, 2333
Bse118I	RCCGGY	3 cut(s)	61, 161, 2148
Bse1I	ACTGG	1 cut(s)	1100
Bse3DI	GCAATG	3 cut(s)	186, 359, 2023
BseBI	CCWGG	5 cut(s)	330, 669, 1278, 2199, 2322
BseDI	CCNNGG	7 cut(s)	1276, 1353, 1562, 1611, 2061, 2321, 2354
BseGI	GGATG	4 cut(s)	421, 1024, 1204, 2057
BseLI	CCNNNNNNNGG	5 cut(s)	47, 524, 1359, 1492, 2333
BseMI	GCAATG	3 cut(s)	186, 359, 2023
BseMII	CTCAG	8 cut(s)	263, 593, 855, 1098, 1567, 1707, 2064, 2235
BseNI	ACTGG	1 cut(s)	1100
BseX3I	CGGCCG	1 cut(s)	2357
BseXI	GCAGC	8 cut(s)	202, 431, 432, 1196, 1440, 2116, 2368, 2380
Bsh1236I	CGCG	2 cut(s)	125, 195
Bsh1285I	CGRYCG	2 cut(s)	204, 2360
BshFI	GGCC	7 cut(s)	970, 1916, 2090, 2249, 2312, 2326, 2359
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	2148
BsiEI	CGRYCG	2 cut(s)	204, 2360
BsiHKAI	GWGCWC	1 cut(s)	1382
BsiHKCI	CYCGRG	1 cut(s)	1375
BsiSI	CCGG	7 cut(s)	62, 162, 176, 200, 502, 2149, 2301
BslFI	GGGAC	3 cut(s)	12, 1701, 2054
BslI	CCNNNNNNNGG	5 cut(s)	47, 524, 1359, 1492, 2333
BsmAI	GTCTC	4 cut(s)	14, 95, 247, 2162
BsmFI	GGGAC	3 cut(s)	12, 1701, 2054
BsmI	GAATGC	1 cut(s)	1222
BsnI	GGCC	7 cut(s)	970, 1916, 2090, 2249, 2312, 2326, 2359
Bso31I	GGTCTC	1 cut(s)	247
BsoBI	CYCGRG	1 cut(s)	1375
Bsp119I	TTCGAA	1 cut(s)	461
Bsp1286I	GDGCHC	2 cut(s)	1382, 2189
Bsp1407I	TGTACA	1 cut(s)	373
Bsp143I	GATC	9 cut(s)	126, 254, 596, 840, 1096, 1495, 1500, 2067, 2336
Bsp68I	TCGCGA	1 cut(s)	125
BspACI	CCGC	5 cut(s)	44, 287, 1266, 1664, 2288
BspANI	GGCC	7 cut(s)	970, 1916, 2090, 2249, 2312, 2326, 2359
BspCNI	CTCAG	8 cut(s)	262, 592, 856, 1099, 1566, 1708, 2063, 2236
BspFNI	CGCG	2 cut(s)	125, 195
BspHI	TCATGA	2 cut(s)	1710, 1761
BspLI	GGNNCC	3 cut(s)	6, 2089, 2250
BspMI	ACCTGC	2 cut(s)	166, 2248
BspPI	GGATC	4 cut(s)	262, 1091, 1503, 2344
BspQI	GCTCTTC	1 cut(s)	225
BspT104I	TTCGAA	1 cut(s)	461
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	247
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	3 cut(s)	186, 359, 2023
BsrFI	RCCGGY	3 cut(s)	61, 161, 2148
BsrGI	TGTACA	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	1100
BssAI	RCCGGY	3 cut(s)	61, 161, 2148
BssECI	CCNNGG	7 cut(s)	1276, 1353, 1562, 1611, 2061, 2321, 2354
BssMI	GATC	9 cut(s)	126, 254, 596, 840, 1096, 1495, 1500, 2067, 2336
BssNI	GRCGYC	1 cut(s)	117
BssSI	CACGAG	1 cut(s)	303
BssT1I	CCWWGG	3 cut(s)	1353, 1562, 1611
Bst2BI	CACGAG	1 cut(s)	303
Bst2UI	CCWGG	5 cut(s)	330, 669, 1278, 2199, 2322
Bst6I	CTCTTC	4 cut(s)	12, 225, 1833, 2015
BstACI	GRCGYC	1 cut(s)	117
BstAUI	TGTACA	1 cut(s)	373
BstBAI	YACGTR	1 cut(s)	815
BstBI	TTCGAA	1 cut(s)	461
BstC8I	GCNNGC	5 cut(s)	63, 163, 1305, 2328, 2386
BstDEI	CTNAG	9 cut(s)	249, 579, 864, 1107, 1553, 1716, 2050, 2244, 2314
BstDSI	CCRYGG	2 cut(s)	2061, 2354
BstF5I	GGATG	4 cut(s)	421, 1024, 1204, 2057
BstFNI	CGCG	2 cut(s)	125, 195
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	9 cut(s)	129, 257, 599, 843, 1099, 1498, 1503, 2070, 2339
BstMAI	GTCTC	4 cut(s)	14, 95, 247, 2162
BstMBI	GATC	9 cut(s)	126, 254, 596, 840, 1096, 1495, 1500, 2067, 2336
BstMCI	CGRYCG	2 cut(s)	204, 2360
BstMWI	GCNNNNNNNGC	8 cut(s)	167, 176, 203, 212, 1028, 1428, 2293, 2365
BstNI	CCWGG	5 cut(s)	330, 669, 1278, 2199, 2322
BstNSI	RCATGY	1 cut(s)	1307
BstSCI	CCNGG	6 cut(s)	328, 501, 667, 1276, 2197, 2320
BstSFI	CTRYAG	2 cut(s)	342, 2340
BstUI	CGCG	2 cut(s)	125, 195
BstV1I	GCAGC	8 cut(s)	202, 431, 432, 1196, 1440, 2116, 2368, 2380
BstX2I	RGATCY	2 cut(s)	254, 2336
BstXI	CCANNNNNNTGG	2 cut(s)	675, 1015
BstYI	RGATCY	2 cut(s)	254, 2336
BstZI	CGGCCG	1 cut(s)	2357
BsuI	GTATCC	1 cut(s)	1356
BsuRI	GGCC	7 cut(s)	970, 1916, 2090, 2249, 2312, 2326, 2359
BtgI	CCRYGG	2 cut(s)	2061, 2354
BtrI	CACGTC	1 cut(s)	1069
BtsCI	GGATG	4 cut(s)	421, 1024, 1204, 2057
BtsI	GCAGTG	2 cut(s)	1002, 1471
BtsIMutI	CAGTG	5 cut(s)	975, 1002, 1104, 1147, 1471
BtuMI	TCGCGA	1 cut(s)	125
BveI	ACCTGC	2 cut(s)	166, 2248
Cac8I	GCNNGC	5 cut(s)	63, 163, 1305, 2328, 2386
CaiI	CAGNNNCTG	1 cut(s)	1106
CciI	TCATGA	2 cut(s)	1710, 1761
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	3 cut(s)	61, 161, 2148
Cfr13I	GGNCC	3 cut(s)	2088, 2248, 2324
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	5 cut(s)	209, 374, 622, 1284, 1328
CspAI	ACCGGT	1 cut(s)	2148
CspCI	CAANNNNNGTGG	2 cut(s)	738, 773
CviAII	CATG	7 cut(s)	1304, 1491, 1711, 1762, 1979, 2037, 2182
CviQI	GTAC	5 cut(s)	209, 374, 622, 1284, 1328
DdeI	CTNAG	9 cut(s)	249, 579, 864, 1107, 1553, 1716, 2050, 2244, 2314
DpnI	GATC	9 cut(s)	128, 256, 598, 842, 1098, 1497, 1502, 2069, 2338
DpnII	GATC	9 cut(s)	126, 254, 596, 840, 1096, 1495, 1500, 2067, 2336
DraI	TTTAAA	1 cut(s)	1987
DraIII	CACNNNGTG	1 cut(s)	1110
EaeI	YGGCCR	1 cut(s)	2357
EagI	CGGCCG	1 cut(s)	2357
Eam1104I	CTCTTC	4 cut(s)	12, 225, 1833, 2015
EarI	CTCTTC	4 cut(s)	12, 225, 1833, 2015
Ecl136II	GAGCTC	1 cut(s)	1380
EclXI	CGGCCG	1 cut(s)	2357
Eco130I	CCWWGG	3 cut(s)	1353, 1562, 1611
Eco147I	AGGCCT	1 cut(s)	1916
Eco24I	GRGCYC	2 cut(s)	1382, 2189
Eco31I	GGTCTC	1 cut(s)	247
Eco52I	CGGCCG	1 cut(s)	2357
Eco53kI	GAGCTC	1 cut(s)	1380
Eco57I	CTGAAG	2 cut(s)	1206, 1996
Eco72I	CACGTG	1 cut(s)	815
Eco88I	CYCGRG	1 cut(s)	1375
EcoICRI	GAGCTC	1 cut(s)	1380
EcoO109I	RGGNCCY	1 cut(s)	2248
EcoRI	GAATTC	1 cut(s)	1621
EcoRII	CCWGG	5 cut(s)	328, 667, 1276, 2197, 2320
EcoT14I	CCWWGG	3 cut(s)	1353, 1562, 1611
EcoT22I	ATGCAT	2 cut(s)	1305, 2059
EcoT38I	GRGCYC	2 cut(s)	1382, 2189
ErhI	CCWWGG	3 cut(s)	1353, 1562, 1611
FaeI	CATG	7 cut(s)	1307, 1494, 1714, 1765, 1982, 2040, 2185
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FaqI	GGGAC	3 cut(s)	12, 1701, 2054
FatI	CATG	7 cut(s)	1303, 1490, 1710, 1761, 1978, 2036, 2181
FauNDI	CATATG	1 cut(s)	965
FokI	GGATG	4 cut(s)	428, 1031, 1191, 2044
FriOI	GRGCYC	2 cut(s)	1382, 2189
FspBI	CTAG	6 cut(s)	233, 258, 369, 1754, 2133, 2414
GlaI	GCGC	1 cut(s)	196
HaeIII	GGCC	7 cut(s)	970, 1916, 2090, 2249, 2312, 2326, 2359
HapII	CCGG	7 cut(s)	62, 162, 176, 200, 502, 2149, 2301
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	7 cut(s)	1307, 1494, 1714, 1765, 1982, 2040, 2185
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	1147
HindII	GTYRAC	1 cut(s)	1147
HindIII	AAGCTT	1 cut(s)	1420
HinfI	GANTC	4 cut(s)	321, 910, 1558, 1765
HpaII	CCGG	7 cut(s)	62, 162, 176, 200, 502, 2149, 2301
HphI	GGTGA	4 cut(s)	625, 771, 799, 1862
Hpy166II	GTNNAC	4 cut(s)	374, 982, 1147, 1828
Hpy8I	GTNNAC	4 cut(s)	374, 982, 1147, 1828
Hpy99I	CGWCG	2 cut(s)	119, 125
HpyAV	CCTTC	2 cut(s)	885, 1090
HpyCH4IV	ACGT	4 cut(s)	78, 814, 1068, 1341
HpyCH4V	TGCA	8 cut(s)	419, 563, 655, 1303, 1307, 1313, 1706, 2057
HpyF10VI	GCNNNNNNNGC	8 cut(s)	167, 176, 203, 212, 1028, 1428, 2293, 2365
HpyF3I	CTNAG	9 cut(s)	249, 579, 864, 1107, 1553, 1716, 2050, 2244, 2314
HpySE526I	ACGT	4 cut(s)	78, 814, 1068, 1341
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	7 cut(s)	1307, 1494, 1714, 1765, 1982, 2040, 2185
HspAI	GCGC	1 cut(s)	195
KroI	GCCGGC	2 cut(s)	61, 161
KroNI	GCCGGC	2 cut(s)	63, 163
Kzo9I	GATC	9 cut(s)	126, 254, 596, 840, 1096, 1495, 1500, 2067, 2336
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	3 cut(s)	202, 1952, 2323
Lsp1109I	GCAGC	8 cut(s)	202, 431, 432, 1196, 1440, 2116, 2368, 2380
LweI	GCATC	7 cut(s)	406, 1009, 1693, 1843, 1885, 2044, 2066
MaeI	CTAG	6 cut(s)	233, 258, 369, 1754, 2133, 2414
MaeII	ACGT	4 cut(s)	78, 814, 1068, 1341
MaeIII	GTNAC	7 cut(s)	574, 973, 1102, 1337, 1696, 2080, 2344
MalI	GATC	9 cut(s)	128, 256, 598, 842, 1098, 1497, 1502, 2069, 2338
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	9 cut(s)	126, 254, 596, 840, 1096, 1495, 1500, 2067, 2336
MfeI	CAATTG	1 cut(s)	1308
MflI	RGATCY	2 cut(s)	254, 2336
MhlI	GDGCHC	2 cut(s)	1382, 2189
MlyI	GAGTC	1 cut(s)	315
MnlI	CCTC	9 cut(s)	51, 160, 299, 778, 946, 1008, 1834, 1927, 2239
Mph1103I	ATGCAT	2 cut(s)	1305, 2059
MroNI	GCCGGC	2 cut(s)	61, 161
MseI	TTAA	7 cut(s)	807, 846, 1455, 1646, 1800, 1986, 2156
MspA1I	CMGCKG	3 cut(s)	422, 2129, 2330
MspI	CCGG	7 cut(s)	62, 162, 176, 200, 502, 2149, 2301
MspR9I	CCNGG	6 cut(s)	330, 503, 669, 1278, 2199, 2322
MunI	CAATTG	1 cut(s)	1308
Mva1269I	GAATGC	1 cut(s)	1222
MvaI	CCWGG	5 cut(s)	330, 669, 1278, 2199, 2322
MvnI	CGCG	2 cut(s)	125, 195
MwoI	GCNNNNNNNGC	8 cut(s)	167, 176, 203, 212, 1028, 1428, 2293, 2365
NaeI	GCCGGC	2 cut(s)	63, 163
NciI	CCSGG	1 cut(s)	503
NdeI	CATATG	1 cut(s)	965
NdeII	GATC	9 cut(s)	126, 254, 596, 840, 1096, 1495, 1500, 2067, 2336
NgoMIV	GCCGGC	2 cut(s)	61, 161
NlaIII	CATG	7 cut(s)	1307, 1494, 1714, 1765, 1982, 2040, 2185
NlaIV	GGNNCC	3 cut(s)	6, 2089, 2250
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	3 cut(s)	973, 1102, 2080
NruI	TCGCGA	1 cut(s)	125
NsiI	ATGCAT	2 cut(s)	1305, 2059
NspI	RCATGY	1 cut(s)	1307
NspV	TTCGAA	1 cut(s)	461
PaeI	GCATGC	1 cut(s)	1307
PaeR7I	CTCGAG	1 cut(s)	1375
PagI	TCATGA	2 cut(s)	1710, 1761
PaqCI	CACCTGC	1 cut(s)	2248
PceI	AGGCCT	1 cut(s)	1916
PciSI	GCTCTTC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	2 cut(s)	1131, 1338
PctI	GAATGC	1 cut(s)	1222
PdiI	GCCGGC	2 cut(s)	63, 163
PfeI	GAWTC	3 cut(s)	910, 1558, 1765
PflFI	GACNNNGTC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	2333
PinAI	ACCGGT	1 cut(s)	2148
PleI	GAGTC	1 cut(s)	315
PmaCI	CACGTG	1 cut(s)	815
PmlI	CACGTG	1 cut(s)	815
PpsI	GAGTC	1 cut(s)	315
Ppu21I	YACGTR	1 cut(s)	815
PsiI	TTATAA	1 cut(s)	2163
Psp124BI	GAGCTC	1 cut(s)	1382
Psp6I	CCWGG	5 cut(s)	328, 667, 1276, 2197, 2320
PspCI	CACGTG	1 cut(s)	815
PspGI	CCWGG	5 cut(s)	328, 667, 1276, 2197, 2320
PspN4I	GGNNCC	3 cut(s)	6, 2089, 2250
PspPI	GGNCC	3 cut(s)	2088, 2248, 2324
PspXI	VCTCGAGB	1 cut(s)	1375
PstNI	CAGNNNCTG	1 cut(s)	1106
PsuI	RGATCY	2 cut(s)	254, 2336
PsyI	GACNNNGTC	1 cut(s)	119
PvuII	CAGCTG	3 cut(s)	422, 2129, 2330
RruI	TCGCGA	1 cut(s)	125
RsaI	GTAC	5 cut(s)	210, 375, 623, 1285, 1329
RsaNI	GTAC	5 cut(s)	209, 374, 622, 1284, 1328
SacI	GAGCTC	1 cut(s)	1382
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	7 cut(s)	807, 846, 1455, 1646, 1800, 1986, 2156
Sau3AI	GATC	9 cut(s)	126, 254, 596, 840, 1096, 1495, 1500, 2067, 2336
Sau96I	GGNCC	3 cut(s)	2088, 2248, 2324
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	6 cut(s)	330, 503, 669, 1278, 2199, 2322
SduI	GDGCHC	2 cut(s)	1382, 2189
SfaNI	GCATC	7 cut(s)	406, 1009, 1693, 1843, 1885, 2044, 2066
SfcI	CTRYAG	2 cut(s)	342, 2340
Sfr274I	CTCGAG	1 cut(s)	1375
SfuI	TTCGAA	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	1375
SmlI	CTYRAG	3 cut(s)	718, 1375, 2031
SmoI	CTYRAG	3 cut(s)	718, 1375, 2031
SpeI	ACTAGT	1 cut(s)	368
SphI	GCATGC	1 cut(s)	1307
SseBI	AGGCCT	1 cut(s)	1916
SsiI	CCGC	5 cut(s)	44, 287, 1266, 1664, 2288
SspI	AATATT	1 cut(s)	685
SspMI	CTAG	6 cut(s)	233, 258, 369, 1754, 2133, 2414
SstI	GAGCTC	1 cut(s)	1382
StuI	AGGCCT	1 cut(s)	1916
StyD4I	CCNGG	6 cut(s)	328, 501, 667, 1276, 2197, 2320
StyI	CCWWGG	3 cut(s)	1353, 1562, 1611
TaiI	ACGT	4 cut(s)	81, 817, 1071, 1344
TatI	WGTACW	3 cut(s)	373, 1283, 1327
TauI	GCSGC	3 cut(s)	289, 1667, 2290
TfiI	GAWTC	3 cut(s)	910, 1558, 1765
Tru1I	TTAA	7 cut(s)	807, 846, 1455, 1646, 1800, 1986, 2156
Tru9I	TTAA	7 cut(s)	807, 846, 1455, 1646, 1800, 1986, 2156
TscAI	CASTG	5 cut(s)	982, 1009, 1111, 1147, 1471
TseFI	GTSAC	3 cut(s)	973, 1102, 2080
TseI	GCWGC	8 cut(s)	215, 419, 445, 1184, 1428, 2129, 2368, 2381
Tsp45I	GTSAC	3 cut(s)	973, 1102, 2080
TspDTI	ATGAA	4 cut(s)	873, 1808, 1967, 2064
TspGWI	ACGGA	1 cut(s)	2050
TspRI	CASTG	5 cut(s)	982, 1009, 1111, 1147, 1471
Tth111I	GACNNNGTC	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	2333
XapI	RAATTY	5 cut(s)	426, 790, 1601, 1621, 1796
XceI	RCATGY	1 cut(s)	1307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	672
XhoI	CTCGAG	1 cut(s)	1375
XspI	CTAG	6 cut(s)	233, 258, 369, 1754, 2133, 2414
Zsp2I	ATGCAT	2 cut(s)	1305, 2059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.