Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002327

Physical Location & Seq

Genomic Coordinates Reverse (-)

61483021 .. 61492107

Gene Structure 9087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG392700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1959 bp

ATGGTCAAATTCGACGATATTTTGACCTTAGCTCCAAGAAACATGAAGCTCATGTTTATGCACCGGTACTATGGAGAATCAATCCCATTCGGCTCTAGAACAGAAGCATTTCAAAATGCAAGCACTCTTGGCTACTTCAACTCAGCCCAAGCTCTAGCAGATTATGCTGAGATCCTCATACATGTAAAGACGCAACTGAATGCTGAACATTCTCCGGTCATTGTTATTGGTGCATCATATGGTGGAATTACTCAGGGAGTATTTTCTCGATCTAACAAGTTTGATGGCAATATAAACCCAATTCTCATCGTAGAAGATGTGGGTATGCAATTCAGACCACCAGGCTTATGGTTGAATATTGAGAACAATATATTCTTCACGCAACACAACTTGAGTATGAGAAACTATGTGCTTTCTGTATCAAAGAAAGTGGTTGTCAATTTTATCTCATCACCAGAGGTGGATTTCCTGAACAGTATTAAAGCACGTGTTAGTCCAAGCGCAACAAAGTTGATCTTTAAGTTTCTTGATGAAGCTGAGATTGAGCCTTCGACAAACCAGACTTATGGTTCTCTATTGAAGAATCTCACATTTATCAAGACATTTGCCTCTGGAATTATAGTTCCAAAAACTTACATATGGCCTGTCACTGTGGACAATTATTTAGAGCCTCACACTACCATTGTTTCGGATGCTCATAAAGCAGGGCTCACAGTATTTGTGTCAGGTTTGTATAATGACGTGCCATTCCCCTTCAATTACAGTTATGATCCAGTTTCTGAGTGCCTGTCATTCTTTGACAACGGCGATTTCAGTGTTGACGATTGTTATGCTTACCCAGAAAAGAATGCTTCAGTACCAGATACACCTTTGGTTATCTCGAAAGACGGAGATAGTGGGGACTACCCTGGCTGTACTGACTTGGCGTATAAGCATGCAATTGCAGATGGTGTAGATGTACTCGATTGTAACGTCCAAATGTCCAAGGACGGGATACCATTTTGCTCGAGCTCAATAAATCTTATTGATAGCACAACAGTTGCTCAAACAAGCTTTAGCAGCTACACAATGGTTGTTCCTGAAATTAAGGTTGGCAGTGGAATATATACGTTTAGCCTGACATGGGATCAGATCAAAACACTACAACCAACCATATCAAGCCCAGAGAAAAATTACAAGTTGATCAGGAATCCAAGATTCAAGAGTGCTGGCACTTACTTGAAACTATCTGAATTTTTGACATTGGCAAAGAATTCGAGTTCTCTCTTAGGTGTCTTAATTGGCATAGAGTATGCGGCGTATCTTGTAGAGAAGAAGGGACTACTTGTAACAGATGCAGTCATGACTGAGTTGAAGAAAGCTGGTTTTGATACTCAGACAGCCCTAGATGTCATGATTCAGTCCAGCAATAGTTCTGTTCTGATGAAATTTAAGGAGAAAAGCAAGTATAAACTTGTTTACAAGATTGAAGAGGACATTGGTGATGCCCCTGATAAAACTGTTCAGGACATCAAGAAGTTTGCCGATGCTGTGGTCATCAACAAGGCCTCTGTTTTTCCAGAAAATCACAATGAGTTTGTATCTCAAGCATGGGACTACTTCTCAGATGCATCCGTGGAGATCAATTCATTTGTGACGGGGGGCGAAGTTGATGGTGTTATCACAGGCTTCCCCAAAACAGCTGCTAGATACAAAAGAAACCGGTGTTTAAGTTATAAAGAGACACCTAGCTACATGAGCCCTGTTCTGCCTGCCAGTCTGATACAAGTTGTTTCTCCGGTTTACTTGCCACCTGATGTGGTTGAGCCGCCTTTGCCGTCAGCCGAAACGGCCTTAGCTCCTGGGCCAGCTGGTGGATCTACAGTACCACCACCACGGCCGAATGGGCAGCCTAAGAGTGCTGCGTGCTTCTTTCTCTCAACTCTGGCTATGCTAGTTGCCTCTCTTTTTCTTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0006968 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009505 GO:0009506 GO:0009653 GO:0009664 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010026 GO:0010052 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0010383 GO:0010441 GO:0010442 GO:0016020 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030243 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042578 GO:0043167 GO:0043169 GO:0043170 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0046872 GO:0048364 GO:0048367 GO:0048468 GO:0048469 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0052541 GO:0055044 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

652

Amino Acids

71.63

Weight (kDa)

5.32

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	20 - 83	8.1e-10	Serine carboxypeptidase S28
GDPD	PF03009	297 - 524	2.5e-17	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66970 AT1G66970 AT1G66970 AT4G26690
fragaria_vesca	FvH4_3g13670 FvH4_3g13670 FvH4_3g13670 FvH4_3g30290 FvH4_3g30290
malus_domestica	MD03G1190400.v1.1 MD11G1207100.v1.1
prunus_persica	Prupe.4G228400_v2.0.a1 Prupe.4G228400_v2.0.a1
pyrus_communis	pycom03g14330 pycom03g14370 pycom11g18010
rosa_chinensis	RchiOBHm_Chr5g0022921 RchiOBHm_Chr5g0056171
rosa_laevigata	RLG00000032682 RLG00000035057 RLG00000035060
rosa_multiflora	Rmu_sc0000680.1_g000027 Rmu_sc0001787.1_g000024 Rmu_sc0002675.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024130 Rroxscaffold_1G00056420
rosa_rugosa	Rorug05G0075500 Rorug05G0297800 Rorug05G0297800
rosa_samantha	Rh5AG162000 Rh5AG368900 Rh5BG161200 Rh5BG379900 Rh5CG175800 Rh5CG402700 Rh5DG162500 Rh5DG392700 Rh5DG392900
rosa_wichuraiana	Rw0G004450 Rw0G012690 Rw5G014580 Rw5G034630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1716
AccB7I	CCANNNNNTGG	1 cut(s)	1853
AciI	CCGC	2 cut(s)	1295, 1808
AclWI	GGATC	4 cut(s)	166, 764, 1134, 1864
AcoI	YGGCCR	1 cut(s)	1877
AcsI	RAATTY	4 cut(s)	8, 1232, 1252, 1427
AcuI	CTGAAG	1 cut(s)	837
AcvI	CACGTG	1 cut(s)	488
AfaI	GTAC	5 cut(s)	68, 858, 916, 960, 1866
AfiI	CCNNNNNNNGG	3 cut(s)	990, 1123, 1853
AflIII	ACRYGT	2 cut(s)	181, 487
AgeI	ACCGGT	2 cut(s)	63, 1701
AgsI	TTSAA	9 cut(s)	113, 139, 355, 580, 757, 1201, 1222, 1354, 1469
AjiI	CACGTC	1 cut(s)	742
AjnI	CCWGG	3 cut(s)	340, 907, 1840
AjuI	GAANNNNNNNTTGG	4 cut(s)	1074, 1106, 1461, 1493
AloI	GAACNNNNNNTCC	2 cut(s)	606, 638
Alw21I	GWGCWC	1 cut(s)	1013
Alw26I	GTCTC	1 cut(s)	1715
AlwI	GGATC	4 cut(s)	166, 764, 1134, 1864
AlwNI	CAGNNNCTG	1 cut(s)	779
Ama87I	CYCGRG	1 cut(s)	1006
AoxI	GGCC	5 cut(s)	641, 1545, 1830, 1844, 1877
ApeKI	GCWGC	4 cut(s)	1059, 1682, 1888, 1901
ApoI	RAATTY	4 cut(s)	8, 1232, 1252, 1427
AsiGI	ACCGGT	2 cut(s)	63, 1701
Asp700I	GAANNNNTTC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	503
AspS9I	GGNCC	1 cut(s)	1844
AsuHPI	GGTGA	2 cut(s)	444, 1493
AvaI	CYCGRG	1 cut(s)	1006
BanII	GRGCYC	3 cut(s)	711, 1013, 1742
BbrPI	CACGTG	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	1013
BbvI	GCAGC	4 cut(s)	1071, 1669, 1888, 1900
BccI	CCATC	3 cut(s)	278, 941, 1646
BceAI	ACGGC	4 cut(s)	820, 1801, 1845, 1892
BcgI	CGANNNNNNTGC	4 cut(s)	812, 846, 1236, 1270
BciT130I	CCWGG	3 cut(s)	342, 909, 1842
BciVI	GTATCC	1 cut(s)	987
BclI	TGATCA	1 cut(s)	1182
BcoDI	GTCTC	1 cut(s)	1715
BfaI	CTAG	6 cut(s)	96, 155, 1385, 1686, 1728, 1934
BfmI	CTRYAG	1 cut(s)	1860
BfuI	GTATCC	1 cut(s)	987
BglI	GCCNNNNNGGC	2 cut(s)	1829, 1885
BisI	GCNGC	6 cut(s)	1060, 1296, 1683, 1808, 1889, 1902
BlsI	GCNGC	6 cut(s)	1061, 1297, 1684, 1809, 1890, 1903
Bme1390I	CCNGG	3 cut(s)	342, 909, 1842
BmeT110I	CYCGRG	1 cut(s)	1006
BmgBI	CACGTC	1 cut(s)	742
BmgT120I	GGNCC	1 cut(s)	1844
BmrFI	CCNGG	3 cut(s)	342, 909, 1842
BmsI	GCATC	7 cut(s)	242, 682, 1324, 1474, 1516, 1597, 1619
Bpu10I	CCTNAGC	2 cut(s)	28, 1834
BpuEI	CTTGAG	2 cut(s)	412, 1569
BsaAI	YACGTR	1 cut(s)	488
BsaJI	CCNNGG	5 cut(s)	907, 984, 1614, 1841, 1874
BsaWI	WCCGGW	4 cut(s)	63, 214, 1701, 1777
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	3 cut(s)	990, 1123, 1853
Bse118I	RCCGGY	2 cut(s)	63, 1701
Bse1I	ACTGG	2 cut(s)	773, 1755
BseBI	CCWGG	3 cut(s)	342, 909, 1842
BseDI	CCNNGG	5 cut(s)	907, 984, 1614, 1841, 1874
BseGI	GGATG	2 cut(s)	697, 1610
BseLI	CCNNNNNNNGG	3 cut(s)	990, 1123, 1853
BseMII	CTCAG	8 cut(s)	156, 159, 266, 528, 771, 1338, 1388, 1617
BseNI	ACTGG	2 cut(s)	773, 1755
BseX3I	CGGCCG	1 cut(s)	1877
BseXI	GCAGC	4 cut(s)	1071, 1669, 1888, 1900
Bsh1285I	CGRYCG	1 cut(s)	1880
BshFI	GGCC	5 cut(s)	643, 1547, 1832, 1846, 1879
BshTI	ACCGGT	2 cut(s)	63, 1701
BsiEI	CGRYCG	1 cut(s)	1880
BsiHKAI	GWGCWC	1 cut(s)	1013
BsiHKCI	CYCGRG	1 cut(s)	1006
BsiSI	CCGG	4 cut(s)	64, 215, 1702, 1778
BslFI	GGGAC	3 cut(s)	914, 1332, 1607
BslI	CCNNNNNNNGG	3 cut(s)	990, 1123, 1853
BsmAI	GTCTC	1 cut(s)	1715
BsmFI	GGGAC	3 cut(s)	914, 1332, 1607
BsmI	GAATGC	2 cut(s)	205, 853
BsnI	GGCC	5 cut(s)	643, 1547, 1832, 1846, 1879
BsoBI	CYCGRG	1 cut(s)	1006
Bsp1286I	GDGCHC	3 cut(s)	711, 1013, 1742
Bsp143I	GATC	9 cut(s)	171, 269, 513, 769, 1126, 1131, 1182, 1620, 1856
BspACI	CCGC	2 cut(s)	1295, 1808
BspANI	GGCC	5 cut(s)	643, 1547, 1832, 1846, 1879
BspCNI	CTCAG	8 cut(s)	155, 160, 265, 529, 772, 1339, 1387, 1616
BspHI	TCATGA	2 cut(s)	1341, 1392
BspPI	GGATC	4 cut(s)	166, 764, 1134, 1864
BsrFI	RCCGGY	2 cut(s)	63, 1701
BsrI	ACTGG	2 cut(s)	773, 1755
BssAI	RCCGGY	2 cut(s)	63, 1701
BssECI	CCNNGG	5 cut(s)	907, 984, 1614, 1841, 1874
BssMI	GATC	9 cut(s)	171, 269, 513, 769, 1126, 1131, 1182, 1620, 1856
BssT1I	CCWWGG	1 cut(s)	984
Bst2UI	CCWGG	3 cut(s)	342, 909, 1842
Bst4CI	ACNGT	7 cut(s)	476, 652, 715, 764, 1039, 1501, 1864
Bst6I	CTCTTC	1 cut(s)	1464
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstBAI	YACGTR	1 cut(s)	488
BstC8I	GCNNGC	6 cut(s)	121, 936, 1210, 1752, 1848, 1906
BstDSI	CCRYGG	2 cut(s)	1614, 1874
BstF5I	GGATG	2 cut(s)	697, 1610
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	9 cut(s)	174, 272, 516, 772, 1129, 1134, 1185, 1623, 1859
BstMAI	GTCTC	1 cut(s)	1715
BstMBI	GATC	9 cut(s)	171, 269, 513, 769, 1126, 1131, 1182, 1620, 1856
BstMCI	CGRYCG	1 cut(s)	1880
BstMWI	GCNNNNNNNGC	8 cut(s)	129, 164, 701, 1059, 1737, 1813, 1829, 1885
BstNI	CCWGG	3 cut(s)	342, 909, 1842
BstNSI	RCATGY	2 cut(s)	185, 938
BstSCI	CCNGG	3 cut(s)	340, 907, 1840
BstSFI	CTRYAG	1 cut(s)	1860
BstV1I	GCAGC	4 cut(s)	1071, 1669, 1888, 1900
BstX2I	RGATCY	2 cut(s)	171, 1856
BstXI	CCANNNNNNTGG	2 cut(s)	348, 566
BstYI	RGATCY	2 cut(s)	171, 1856
BstZI	CGGCCG	1 cut(s)	1877
BsuI	GTATCC	1 cut(s)	987
BsuRI	GGCC	5 cut(s)	643, 1547, 1832, 1846, 1879
BtgI	CCRYGG	2 cut(s)	1614, 1874
BtrI	CACGTC	1 cut(s)	742
BtsCI	GGATG	2 cut(s)	697, 1610
BtsI	GCAGTG	1 cut(s)	1102
BtsIMutI	CAGTG	3 cut(s)	648, 820, 1102
Cac8I	GCNNGC	6 cut(s)	121, 936, 1210, 1752, 1848, 1906
CaiI	CAGNNNCTG	1 cut(s)	779
CciI	TCATGA	2 cut(s)	1341, 1392
CfoI	GCGC	1 cut(s)	503
Cfr10I	RCCGGY	2 cut(s)	63, 1701
Cfr13I	GGNCC	1 cut(s)	1844
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	5 cut(s)	67, 857, 915, 959, 1865
CspAI	ACCGGT	2 cut(s)	63, 1701
CspCI	CAANNNNNGTGG	2 cut(s)	411, 446
CviAII	CATG	9 cut(s)	43, 52, 182, 935, 1122, 1342, 1393, 1590, 1735
CviQI	GTAC	5 cut(s)	67, 857, 915, 959, 1865
DpnI	GATC	9 cut(s)	173, 271, 515, 771, 1128, 1133, 1184, 1622, 1858
DpnII	GATC	9 cut(s)	171, 269, 513, 769, 1126, 1131, 1182, 1620, 1856
EaeI	YGGCCR	1 cut(s)	1877
EagI	CGGCCG	1 cut(s)	1877
Eam1104I	CTCTTC	1 cut(s)	1464
EarI	CTCTTC	1 cut(s)	1464
Ecl136II	GAGCTC	1 cut(s)	1011
EclXI	CGGCCG	1 cut(s)	1877
Eco130I	CCWWGG	1 cut(s)	984
Eco147I	AGGCCT	1 cut(s)	1547
Eco24I	GRGCYC	3 cut(s)	711, 1013, 1742
Eco52I	CGGCCG	1 cut(s)	1877
Eco53kI	GAGCTC	1 cut(s)	1011
Eco57I	CTGAAG	1 cut(s)	837
Eco72I	CACGTG	1 cut(s)	488
Eco88I	CYCGRG	1 cut(s)	1006
EcoICRI	GAGCTC	1 cut(s)	1011
EcoRI	GAATTC	1 cut(s)	1252
EcoRII	CCWGG	3 cut(s)	340, 907, 1840
EcoT14I	CCWWGG	1 cut(s)	984
EcoT22I	ATGCAT	1 cut(s)	1612
EcoT38I	GRGCYC	3 cut(s)	711, 1013, 1742
ErhI	CCWWGG	1 cut(s)	984
FaeI	CATG	9 cut(s)	46, 55, 185, 938, 1125, 1345, 1396, 1593, 1738
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FaqI	GGGAC	3 cut(s)	914, 1332, 1607
FatI	CATG	9 cut(s)	42, 51, 181, 934, 1121, 1341, 1392, 1589, 1734
FauNDI	CATATG	2 cut(s)	238, 638
FbaI	TGATCA	1 cut(s)	1182
Fnu4HI	GCNGC	6 cut(s)	1060, 1296, 1683, 1808, 1889, 1902
FokI	GGATG	2 cut(s)	704, 1597
FriOI	GRGCYC	3 cut(s)	711, 1013, 1742
Fsp4HI	GCNGC	6 cut(s)	1060, 1296, 1683, 1808, 1889, 1902
FspBI	CTAG	6 cut(s)	96, 155, 1385, 1686, 1728, 1934
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	6 cut(s)	1060, 1296, 1683, 1808, 1889, 1902
HaeIII	GGCC	5 cut(s)	643, 1547, 1832, 1846, 1879
HapII	CCGG	4 cut(s)	64, 215, 1702, 1778
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	1 cut(s)	503
Hin1II	CATG	9 cut(s)	46, 55, 185, 938, 1125, 1345, 1396, 1593, 1738
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HindIII	AAGCTT	1 cut(s)	1051
HinfI	GANTC	5 cut(s)	77, 583, 1189, 1197, 1396
HpaII	CCGG	4 cut(s)	64, 215, 1702, 1778
HphI	GGTGA	2 cut(s)	444, 1493
Hpy166II	GTNNAC	4 cut(s)	655, 820, 1459, 1783
Hpy8I	GTNNAC	4 cut(s)	655, 820, 1459, 1783
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	3 cut(s)	558, 763, 1309
HpyCH4III	ACNGT	7 cut(s)	476, 652, 715, 764, 1039, 1501, 1864
HpyCH4IV	ACGT	4 cut(s)	487, 741, 972, 1109
HpyCH4V	TGCA	8 cut(s)	61, 119, 233, 328, 938, 944, 1337, 1610
HpyF10VI	GCNNNNNNNGC	8 cut(s)	129, 164, 701, 1059, 1737, 1813, 1829, 1885
HpySE526I	ACGT	4 cut(s)	487, 741, 972, 1109
Hsp92II	CATG	9 cut(s)	46, 55, 185, 938, 1125, 1345, 1396, 1593, 1738
HspAI	GCGC	1 cut(s)	501
Ksp22I	TGATCA	1 cut(s)	1182
Kzo9I	GATC	9 cut(s)	171, 269, 513, 769, 1126, 1131, 1182, 1620, 1856
LmnI	GCTCC	2 cut(s)	37, 1843
Lsp1109I	GCAGC	4 cut(s)	1071, 1669, 1888, 1900
LweI	GCATC	7 cut(s)	242, 682, 1324, 1474, 1516, 1597, 1619
MaeI	CTAG	6 cut(s)	96, 155, 1385, 1686, 1728, 1934
MaeII	ACGT	4 cut(s)	487, 741, 972, 1109
MaeIII	GTNAC	4 cut(s)	646, 968, 1327, 1633
MalI	GATC	9 cut(s)	173, 271, 515, 771, 1128, 1133, 1184, 1622, 1858
MboI	GATC	9 cut(s)	171, 269, 513, 769, 1126, 1131, 1182, 1620, 1856
MboII	GAAGA	6 cut(s)	326, 367, 592, 1324, 1366, 1481
MfeI	CAATTG	1 cut(s)	939
MflI	RGATCY	2 cut(s)	171, 1856
MhlI	GDGCHC	3 cut(s)	711, 1013, 1742
MnlI	CCTC	7 cut(s)	185, 451, 619, 681, 1465, 1558, 1951
Mph1103I	ATGCAT	1 cut(s)	1612
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	6 cut(s)	480, 519, 1086, 1277, 1431, 1709
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	2 cut(s)	1682, 1850
MspI	CCGG	4 cut(s)	64, 215, 1702, 1778
MspR9I	CCNGG	3 cut(s)	342, 909, 1842
MunI	CAATTG	1 cut(s)	939
Mva1269I	GAATGC	2 cut(s)	205, 853
MvaI	CCWGG	3 cut(s)	342, 909, 1842
MwoI	GCNNNNNNNGC	8 cut(s)	129, 164, 701, 1059, 1737, 1813, 1829, 1885
NdeI	CATATG	2 cut(s)	238, 638
NdeII	GATC	9 cut(s)	171, 269, 513, 769, 1126, 1131, 1182, 1620, 1856
NlaIII	CATG	9 cut(s)	46, 55, 185, 938, 1125, 1345, 1396, 1593, 1738
NmuCI	GTSAC	2 cut(s)	646, 1633
NsiI	ATGCAT	1 cut(s)	1612
NspI	RCATGY	2 cut(s)	185, 938
PaeI	GCATGC	1 cut(s)	938
PaeR7I	CTCGAG	1 cut(s)	1006
PagI	TCATGA	2 cut(s)	1341, 1392
PceI	AGGCCT	1 cut(s)	1547
PciI	ACATGT	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	969
PctI	GAATGC	2 cut(s)	205, 853
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	5 cut(s)	77, 583, 1189, 1197, 1396
PflMI	CCANNNNNTGG	1 cut(s)	1853
PinAI	ACCGGT	2 cut(s)	63, 1701
PkrI	GCNGC	6 cut(s)	1061, 1297, 1684, 1809, 1890, 1903
PmaCI	CACGTG	1 cut(s)	488
PmlI	CACGTG	1 cut(s)	488
Ppu21I	YACGTR	1 cut(s)	488
PscI	ACATGT	1 cut(s)	181
PsiI	TTATAA	1 cut(s)	1716
Psp124BI	GAGCTC	1 cut(s)	1013
Psp6I	CCWGG	3 cut(s)	340, 907, 1840
PspCI	CACGTG	1 cut(s)	488
PspGI	CCWGG	3 cut(s)	340, 907, 1840
PspPI	GGNCC	1 cut(s)	1844
PspXI	VCTCGAGB	1 cut(s)	1006
PstNI	CAGNNNCTG	1 cut(s)	779
PsuI	RGATCY	2 cut(s)	171, 1856
PvuII	CAGCTG	2 cut(s)	1682, 1850
RsaI	GTAC	5 cut(s)	68, 858, 916, 960, 1866
RsaNI	GTAC	5 cut(s)	67, 857, 915, 959, 1865
RseI	CAYNNNNRTG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	1013
SaqAI	TTAA	6 cut(s)	480, 519, 1086, 1277, 1431, 1709
SatI	GCNGC	6 cut(s)	1060, 1296, 1683, 1808, 1889, 1902
Sau3AI	GATC	9 cut(s)	171, 269, 513, 769, 1126, 1131, 1182, 1620, 1856
Sau96I	GGNCC	1 cut(s)	1844
ScrFI	CCNGG	3 cut(s)	342, 909, 1842
SduI	GDGCHC	3 cut(s)	711, 1013, 1742
SfaNI	GCATC	7 cut(s)	242, 682, 1324, 1474, 1516, 1597, 1619
SfcI	CTRYAG	1 cut(s)	1860
Sfr274I	CTCGAG	1 cut(s)	1006
SlaI	CTCGAG	1 cut(s)	1006
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	3 cut(s)	391, 1006, 1584
SmoI	CTYRAG	3 cut(s)	391, 1006, 1584
SphI	GCATGC	1 cut(s)	938
SseBI	AGGCCT	1 cut(s)	1547
SsiI	CCGC	2 cut(s)	1295, 1808
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	6 cut(s)	96, 155, 1385, 1686, 1728, 1934
SstI	GAGCTC	1 cut(s)	1013
StuI	AGGCCT	1 cut(s)	1547
StyD4I	CCNGG	3 cut(s)	340, 907, 1840
StyI	CCWWGG	1 cut(s)	984
TaaI	ACNGT	7 cut(s)	476, 652, 715, 764, 1039, 1501, 1864
TaiI	ACGT	4 cut(s)	490, 744, 975, 1112
TaqI	TCGA	7 cut(s)	12, 268, 551, 881, 963, 1007, 1256
TatI	WGTACW	2 cut(s)	914, 958
TauI	GCSGC	2 cut(s)	1298, 1810
TfiI	GAWTC	5 cut(s)	77, 583, 1189, 1197, 1396
Tru1I	TTAA	6 cut(s)	480, 519, 1086, 1277, 1431, 1709
Tru9I	TTAA	6 cut(s)	480, 519, 1086, 1277, 1431, 1709
TscAI	CASTG	3 cut(s)	655, 820, 1102
TseFI	GTSAC	2 cut(s)	646, 1633
TseI	GCWGC	4 cut(s)	1059, 1682, 1888, 1901
Tsp45I	GTSAC	2 cut(s)	646, 1633
TspDTI	ATGAA	4 cut(s)	59, 546, 1439, 1617
TspGWI	ACGGA	2 cut(s)	903, 1603
TspRI	CASTG	3 cut(s)	655, 820, 1102
Van91I	CCANNNNNTGG	1 cut(s)	1853
XapI	RAATTY	4 cut(s)	8, 1232, 1252, 1427
XbaI	TCTAGA	1 cut(s)	95
XceI	RCATGY	2 cut(s)	185, 938
XcmI	CCANNNNNNNNNTGG	1 cut(s)	345
XhoI	CTCGAG	1 cut(s)	1006
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	6 cut(s)	96, 155, 1385, 1686, 1728, 1934
Zsp2I	ATGCAT	1 cut(s)	1612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.