Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00564

Orthogroup ID

OG0002327

Physical Location & Seq

Genomic Coordinates Forward (+)

198867 .. 199931

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G012690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTGGAACTCACGCGCTCCGGTCGCCGTACTTGCTGCTCTTCTCTACTCAGTAGCTCTGGTCTCTGCTCAGGGATCTAGTCAATGGAAAACACTCACAGGAGATCCGCCTTTGGTCATAGCACGAGGGGGCTTTTCAGGACTCTTTCCTGGTTTCAGTTCTATAGCGTACAATTTGGCATTGATCACTAGTGTACCAGATGTGGAAAAAACTTACCCGGTTGATGGAGTTCCGAAAAAAGGGTGGTTTAGCATTGACTATACTCTCAAAGACCTTGCAAATGTTATTGGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0006968 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009505 GO:0009506 GO:0009653 GO:0009664 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010026 GO:0010052 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0010383 GO:0010441 GO:0010442 GO:0016020 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030243 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042578 GO:0043167 GO:0043169 GO:0043170 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0046872 GO:0048364 GO:0048367 GO:0048468 GO:0048469 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0052541 GO:0055044 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

98

Amino Acids

10.42

Weight (kDa)

6.13

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66970 AT1G66970 AT1G66970 AT4G26690
fragaria_vesca	FvH4_3g13670 FvH4_3g13670 FvH4_3g13670 FvH4_3g30290 FvH4_3g30290
malus_domestica	MD03G1190400.v1.1 MD11G1207100.v1.1
prunus_persica	Prupe.4G228400_v2.0.a1 Prupe.4G228400_v2.0.a1
pyrus_communis	pycom03g14330 pycom03g14370 pycom11g18010
rosa_chinensis	RchiOBHm_Chr5g0022921 RchiOBHm_Chr5g0056171
rosa_laevigata	RLG00000032682 RLG00000035057 RLG00000035060
rosa_multiflora	Rmu_sc0000680.1_g000027 Rmu_sc0001787.1_g000024 Rmu_sc0002675.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024130 Rroxscaffold_1G00056420
rosa_rugosa	Rorug05G0075500 Rorug05G0297800 Rorug05G0297800
rosa_samantha	Rh5AG162000 Rh5AG368900 Rh5BG161200 Rh5BG379900 Rh5CG175800 Rh5CG402700 Rh5DG162500 Rh5DG392700 Rh5DG392900
rosa_wichuraiana	Rw0G004450 Rw0G012690 Rw5G014580 Rw5G034630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	15
AciI	CCGC	1 cut(s)	107
AclWI	GGATC	2 cut(s)	82, 98
AfaI	GTAC	3 cut(s)	30, 170, 195
AfiI	CCNNNNNNNGG	2 cut(s)	224, 239
AhlI	ACTAGT	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	2 cut(s)	82, 98
ApeKI	GCWGC	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	17
AsuC2I	CCSGG	1 cut(s)	218
BaeI	ACNNNNGTAYC	2 cut(s)	177, 210
BauI	CACGAG	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	218
BceAI	ACGGC	1 cut(s)	11
BciT130I	CCWGG	1 cut(s)	150
BclI	TGATCA	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	67
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	2 cut(s)	78, 189
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	2 cut(s)	150, 218
BmrFI	CCNGG	2 cut(s)	150, 218
Bpu10I	CCTNAGC	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	67
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 239
BseBI	CCWGG	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	224, 239
BseMII	CTCAG	2 cut(s)	63, 83
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	15
Bsh1285I	CGRYCG	1 cut(s)	24
BsiEI	CGRYCG	1 cut(s)	24
BsiSI	CCGG	2 cut(s)	20, 218
BslI	CCNNNNNNNGG	2 cut(s)	224, 239
BsmAI	GTCTC	1 cut(s)	67
Bso31I	GGTCTC	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	74, 103, 183
BspACI	CCGC	1 cut(s)	107
BspCNI	CTCAG	2 cut(s)	62, 82
BspFNI	CGCG	1 cut(s)	15
BspPI	GGATC	2 cut(s)	82, 98
BspQI	GCTCTTC	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	67
BssMI	GATC	3 cut(s)	74, 103, 183
BssSI	CACGAG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	150
Bst6I	CTCTTC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	49, 69
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	3 cut(s)	77, 106, 186
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	3 cut(s)	74, 103, 183
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 32
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	148, 216
BstSFI	CTRYAG	1 cut(s)	162
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	2 cut(s)	74, 103
BstYI	RGATCY	2 cut(s)	74, 103
CfoI	GCGC	1 cut(s)	17
Csp6I	GTAC	3 cut(s)	29, 169, 194
CviJI	RGCY	2 cut(s)	56, 132
CviKI_1	RGCY	2 cut(s)	56, 132
CviQI	GTAC	3 cut(s)	29, 169, 194
DdeI	CTNAG	2 cut(s)	49, 69
DpnI	GATC	3 cut(s)	76, 105, 185
DpnII	GATC	3 cut(s)	74, 103, 183
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	148
FaiI	YATR	3 cut(s)	119, 164, 261
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	2 cut(s)	78, 189
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	36
HapII	CCGG	2 cut(s)	20, 218
HhaI	GCGC	1 cut(s)	17
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HinfI	GANTC	1 cut(s)	141
HpaII	CCGG	2 cut(s)	20, 218
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	1 cut(s)	138
Hpy8I	GTNNAC	1 cut(s)	194
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 32
HpyF3I	CTNAG	2 cut(s)	49, 69
HspAI	GCGC	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	3 cut(s)	74, 103, 183
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	9 cut(s)	33, 44, 56, 84, 123, 135, 162, 210, 231
Lsp1109I	GCAGC	1 cut(s)	22
MaeI	CTAG	2 cut(s)	78, 189
MalI	GATC	3 cut(s)	76, 105, 185
MboI	GATC	3 cut(s)	74, 103, 183
MboII	GAAGA	1 cut(s)	32
MflI	RGATCY	2 cut(s)	74, 103
MluCI	AATT	1 cut(s)	172
MlyI	GAGTC	1 cut(s)	135
MnlI	CCTC	1 cut(s)	119
MspI	CCGG	2 cut(s)	20, 218
MspR9I	CCNGG	2 cut(s)	150, 218
MvaI	CCWGG	1 cut(s)	150
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	23, 32
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	3 cut(s)	74, 103, 183
PciSI	GCTCTTC	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	37
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PsuI	RGATCY	2 cut(s)	74, 103
RsaI	GTAC	3 cut(s)	30, 170, 195
RsaNI	GTAC	3 cut(s)	29, 169, 194
SapI	GCTCTTC	1 cut(s)	45
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	3 cut(s)	74, 103, 183
SchI	GAGTC	1 cut(s)	135
ScrFI	CCNGG	2 cut(s)	150, 218
SetI	ASST	2 cut(s)	58, 276
SfcI	CTRYAG	1 cut(s)	162
SpeI	ACTAGT	1 cut(s)	188
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	1 cut(s)	107
SspMI	CTAG	2 cut(s)	78, 189
StyD4I	CCNGG	2 cut(s)	148, 216
TasI	AATT	1 cut(s)	172
TseI	GCWGC	1 cut(s)	35
XspI	CTAG	2 cut(s)	78, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.