Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002327

Physical Location & Seq

Genomic Coordinates Forward (+)

17393673 .. 17398697

Gene Structure 5025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG162000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2286 bp

ATGTGGAGCTCTTGTGCTCTGGTTGTTACACTACTTGCTTCTCTTCTTCTTCTTCTTCTTCCTCACTTGGCAGCTCTGATCTCTGCTGATCAGGGCTCCACCACTAGTCAGTGGCAAACACTCAAAGGCAAGCCGCCTTTGGTCATAGCACGCGGGGGTTTTTCAGGACTATTACCTGGTTCTAGTTCTGACGCATACAAGTTCACATTGTCCATTAGTGTACCAGATGTGTTATTTTGGTGCGATGTCCAACTAACAAAGGAAGGAGCTGGAATTTGCTTTCCAGATCTGCTACTGAATAACAATTCTAATGTTGATATCATCTATCCAAAGAAGGACAAGACTTACATAGTTAACGGAGTTCCTACTGGCGGATGGTTCACCATCGATTATACTCTTAAGGAGCTTGCAAATGTTTCTATTACTCAGGGAGTATTTAGTCGAGCTAATAGGTTTGATGACAATTTGTACCCAATTCTCACTGTTGAAGATGTGGCTATGAATTTGACACCACCAGGCTTATGGTTGAATATTGAGAACAATATCTTCTTCTCACAACACAACTTGAGTATGAGAAACTTTGTGCCTTCTGTAATGAGAAAAGTGGTTGTGAATTATATCTCATCACCGGAGGTGGCTTTCCTGAACAGTATTAAAGGAGTTGTTAGTCCAAGAACTACTAAGTTGGTCTTTCGGTTTCTGGAACAAACTGAGATTGAGCCTTCAACCAATCAAACTTATGGATCTCTGTTAAAGAATCTCACATTCATCAAGACATTTGCCTCCGGAATTCTAGTTCCTAAAACTTACATATGGCCAGTCACTAATGACAATTATTTAGAACCACACACTTCACTTGTTTTGGATGCTCATGAAGCAGAACTAATGGTATTTGCGTCCGATTTGGTGAATGATGTGCCATTACCCTACAATTACAGTTATGATCCATTAGCTGAGTGCTTGTCATTCATAGACAATGGCAACTTCACTGTTGATGGTGTGCTGTCTGACTTTCCGATAACTTCATCAGCAGCCATAGATTGCTTTGCTCACCTAAGTCAAAATGCTCCAGTGCAAGACAAGCCTTTGATTATATCGAAAAATGGAGCAAGTGGAGACTACCCTGATTGTACTGATTTGGCATATATGAAAGCACTTGAAGATGGTGTGAATGTACTCGATTGTCCTGTCCAAATGTCCAAGGACGGGATACCATTTTGCTCCAGTTCTATAAACCTTATTCATAGCACAACAGTTGCTCAATCAAGTTTTCAGAACTTAACAATGGTTGTTCCAGAGATTCAGGCTGACAATGGAATATATACCTTTAGCCTGACATGGGATCAGATCAAGACATTACAACCAAGTATATCAAACCCCCAGCAGACTCTGTACAAGTTGTACAGGAATCCAAGGTTCAAAAGTGCTGGGACTTACAAGAGATTATCTGATTTTTTTACCTTGGCAAAGAACAGGAGCTCTGTTTCAGGTGTCATAATCAGCATAGAGTATGCAGCATATCTTGCAGAGAAGCAGGGATTAAGTGTAACAGATGCAGTCATTAATGAGTTGAACAAAGCTGGTTTGGACAATCAGACAGCCCTAGATGTCATGATTCAGTCCACTAATAGTTCTGTTCTAATGAAATTTAAGGAGGTAAGCAAGTGTAAACTTGTTTACAAGATCGAAGAAGTTATTGGTGATGCCCTTAATACAACTCTTCAGGACATCAAGAAGTTTGCCAATTCTGTGGTCATCAACAAGGCCTCTGTCCTTCCTGAAAATAGTGAATACATCACTGGAGCAACCAATGTTGTAACAAAGCTGCATGCATTTGATCTTCCTGTTTATGTCGAACTGTTCAGCAATGAGTATGTATCTCAAGCATGGGACTTCTTCTCTGATCCAACTGTTGAGATCAATTCATTTGTCTCCGGGGCCAATGTTGATGGTATTATCACAGACTTCCCCAAAACAGCTGCTAGATACAAAAGAAACAGGTGTTTATTTTATAAAGAGAGACCTAGCTACATGAAGCCTGTTCCGCCAGGCGCGCTGTTAACAGTTGTTTCTCCTCGTCAATTGCCACCGGCTGAGGCTCCGAATCCAGTGCTGATAGAGAGTGATGTGATTGAACCACCTTTGCCTTCCGCCTTAGCTCCAGGGATCACCAATGGATCTACAGTAGCACCACCACCACCACCTCCAAACGGGCAGCCTAAGATTGCTGCATGCTTCTTTCTCTCAAATCTGGCTTTGCTTGTTGCCACCCTTTTACTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0006968 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009505 GO:0009506 GO:0009653 GO:0009664 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010026 GO:0010052 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0010383 GO:0010441 GO:0010442 GO:0016020 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030243 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042578 GO:0043167 GO:0043169 GO:0043170 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0046872 GO:0048364 GO:0048367 GO:0048468 GO:0048469 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0052541 GO:0055044 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

761

Amino Acids

83.42

Weight (kDa)

5.09

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	369 - 659	8.2e-25	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66970 AT1G66970 AT1G66970 AT4G26690
fragaria_vesca	FvH4_3g13670 FvH4_3g13670 FvH4_3g13670 FvH4_3g30290 FvH4_3g30290
malus_domestica	MD03G1190400.v1.1 MD11G1207100.v1.1
prunus_persica	Prupe.4G228400_v2.0.a1 Prupe.4G228400_v2.0.a1
pyrus_communis	pycom03g14330 pycom03g14370 pycom11g18010
rosa_chinensis	RchiOBHm_Chr5g0022921 RchiOBHm_Chr5g0056171
rosa_laevigata	RLG00000032682 RLG00000035057 RLG00000035060
rosa_multiflora	Rmu_sc0000680.1_g000027 Rmu_sc0001787.1_g000024 Rmu_sc0002675.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024130 Rroxscaffold_1G00056420
rosa_rugosa	Rorug05G0075500 Rorug05G0297800 Rorug05G0297800
rosa_samantha	Rh5AG162000 Rh5AG368900 Rh5BG161200 Rh5BG379900 Rh5CG175800 Rh5CG402700 Rh5DG162500 Rh5DG392700 Rh5DG392900
rosa_wichuraiana	Rw0G004450 Rw0G012690 Rw5G014580 Rw5G034630

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2013
AccII	CGCG	2 cut(s)	153, 2054
AccIII	TCCGGA	1 cut(s)	785
AciI	CCGC	5 cut(s)	134, 153, 372, 2045, 2151
AclWI	GGATC	6 cut(s)	751, 938, 1350, 1898, 2174, 2185
AcoI	YGGCCR	1 cut(s)	815
AcsI	RAATTY	4 cut(s)	273, 502, 789, 1646
AcuI	CTGAAG	1 cut(s)	1706
AfaI	GTAC	6 cut(s)	222, 470, 1132, 1176, 1394, 1403
AfiI	CCNNNNNNNGG	4 cut(s)	371, 1206, 1339, 2210
AflII	CTTAAG	1 cut(s)	398
AgsI	TTSAA	7 cut(s)	488, 529, 726, 1160, 1420, 1573, 2135
AhlI	ACTAGT	1 cut(s)	104
AjnI	CCWGG	4 cut(s)	175, 514, 2047, 2161
AjuI	GAANNNNNNNTTGG	2 cut(s)	1680, 1712
AloI	GAACNNNNNNTCC	2 cut(s)	780, 812
Alw21I	GWGCWC	3 cut(s)	11, 19, 1481
Alw26I	GTCTC	3 cut(s)	1110, 1936, 2014
AlwI	GGATC	6 cut(s)	751, 938, 1350, 1898, 2174, 2185
AlwNI	CAGNNNCTG	1 cut(s)	1390
Aor13HI	TCCGGA	1 cut(s)	785
AoxI	GGCC	3 cut(s)	815, 1764, 1938
ApeKI	GCWGC	7 cut(s)	71, 1031, 1514, 1825, 1979, 2215, 2228
ApoI	RAATTY	4 cut(s)	273, 502, 789, 1646
AseI	ATTAAT	1 cut(s)	1563
AspLEI	GCGC	2 cut(s)	2054, 2056
AspS9I	GGNCC	1 cut(s)	1938
AsuC2I	CCSGG	1 cut(s)	1936
AsuHPI	GGTGA	6 cut(s)	373, 618, 919, 1043, 1712, 2161
BalI	TGGCCA	1 cut(s)	817
BanII	GRGCYC	3 cut(s)	11, 98, 1481
Bbv12I	GWGCWC	3 cut(s)	11, 19, 1481
BbvCI	CCTCAGC	1 cut(s)	2094
BbvI	GCAGC	7 cut(s)	83, 1043, 1526, 1812, 1966, 2215, 2227
BccI	CCATC	5 cut(s)	369, 392, 989, 1157, 1943
BcgI	CGANNNNNNTGC	2 cut(s)	2092, 2126
BciT130I	CCWGG	4 cut(s)	177, 516, 2049, 2163
BciVI	GTATCC	1 cut(s)	1203
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	1936
BcoDI	GTCTC	3 cut(s)	1110, 1936, 2014
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	6 cut(s)	105, 183, 794, 1604, 1983, 2025
BfmI	CTRYAG	1 cut(s)	2181
BfrI	CTTAAG	1 cut(s)	398
BfuI	GTATCC	1 cut(s)	1203
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	8 cut(s)	72, 134, 1032, 1515, 1826, 1980, 2216, 2229
BlsI	GCNGC	8 cut(s)	73, 135, 1033, 1516, 1827, 1981, 2217, 2230
Bme1390I	CCNGG	5 cut(s)	177, 516, 1936, 2049, 2163
BmgT120I	GGNCC	1 cut(s)	1938
BmiI	GGNNCC	3 cut(s)	97, 1939, 2100
BmrFI	CCNGG	5 cut(s)	177, 516, 1936, 2049, 2163
BmsI	GCATC	3 cut(s)	856, 1543, 1693
BpmI	CTGGAG	4 cut(s)	1053, 1207, 1821, 2145
Bpu10I	CCTNAGC	2 cut(s)	2094, 2155
BpuEI	CTTGAG	2 cut(s)	586, 1866
BpuMI	CCSGG	1 cut(s)	1936
Bsa29I	ATCGAT	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	2014
BsaJI	CCNNGG	5 cut(s)	1200, 1412, 1461, 1935, 2162
BsaWI	WCCGGW	2 cut(s)	628, 785
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	4 cut(s)	371, 1206, 1339, 2210
Bse118I	RCCGGY	1 cut(s)	2089
Bse1I	ACTGG	6 cut(s)	373, 818, 1070, 1224, 1804, 2108
Bse3DI	GCAATG	1 cut(s)	1873
BseAI	TCCGGA	1 cut(s)	785
BseBI	CCWGG	4 cut(s)	177, 516, 2049, 2163
BseCI	ATCGAT	1 cut(s)	387
BseDI	CCNNGG	5 cut(s)	1200, 1412, 1461, 1935, 2162
BseGI	GGATG	2 cut(s)	380, 871
BseLI	CCNNNNNNNGG	4 cut(s)	371, 1206, 1339, 2210
BseMI	GCAATG	1 cut(s)	1873
BseMII	CTCAG	4 cut(s)	440, 702, 945, 2085
BseNI	ACTGG	6 cut(s)	373, 818, 1070, 1224, 1804, 2108
BsePI	GCGCGC	1 cut(s)	2052
BseRI	GAGGAG	1 cut(s)	2064
BseXI	GCAGC	7 cut(s)	83, 1043, 1526, 1812, 1966, 2215, 2227
BseYI	CCCAGC	2 cut(s)	1380, 1427
Bsh1236I	CGCG	2 cut(s)	153, 2054
BshFI	GGCC	3 cut(s)	817, 1766, 1940
BshVI	ATCGAT	1 cut(s)	387
BsiHKAI	GWGCWC	3 cut(s)	11, 19, 1481
BsiSI	CCGG	4 cut(s)	629, 786, 1935, 2090
BslFI	GGGAC	2 cut(s)	1444, 1904
BslI	CCNNNNNNNGG	4 cut(s)	371, 1206, 1339, 2210
BsmAI	GTCTC	3 cut(s)	1110, 1936, 2014
BsmFI	GGGAC	2 cut(s)	1444, 1904
BsnI	GGCC	3 cut(s)	817, 1766, 1940
Bso31I	GGTCTC	1 cut(s)	2014
Bsp1286I	GDGCHC	4 cut(s)	11, 19, 98, 1481
Bsp13I	TCCGGA	1 cut(s)	785
Bsp1407I	TGTACA	2 cut(s)	1392, 1401
BspACI	CCGC	5 cut(s)	134, 153, 372, 2045, 2151
BspANI	GGCC	3 cut(s)	817, 1766, 1940
BspCNI	CTCAG	4 cut(s)	439, 703, 946, 2086
BspDI	ATCGAT	1 cut(s)	387
BspEI	TCCGGA	1 cut(s)	785
BspFNI	CGCG	2 cut(s)	153, 2054
BspHI	TCATGA	2 cut(s)	871, 1611
BspLI	GGNNCC	3 cut(s)	97, 1939, 2100
BspPI	GGATC	6 cut(s)	751, 938, 1350, 1898, 2174, 2185
BspTI	CTTAAG	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	2014
BsrDI	GCAATG	1 cut(s)	1873
BsrFI	RCCGGY	1 cut(s)	2089
BsrGI	TGTACA	2 cut(s)	1392, 1401
BsrI	ACTGG	6 cut(s)	373, 818, 1070, 1224, 1804, 2108
BssAI	RCCGGY	1 cut(s)	2089
BssECI	CCNNGG	5 cut(s)	1200, 1412, 1461, 1935, 2162
BssHII	GCGCGC	1 cut(s)	2052
BssT1I	CCWWGG	3 cut(s)	1200, 1412, 1461
Bst2UI	CCWGG	4 cut(s)	177, 516, 2049, 2163
Bst4CI	ACNGT	9 cut(s)	484, 650, 938, 991, 1255, 1860, 1912, 2065, 2185
Bst6I	CTCTTC	2 cut(s)	48, 1725
BstAFI	CTTAAG	1 cut(s)	398
BstAPI	GCANNNNNTGC	1 cut(s)	1523
BstAUI	TGTACA	2 cut(s)	1392, 1401
BstC8I	GCNNGC	6 cut(s)	131, 151, 408, 1830, 2054, 2233
BstDEI	CTNAG	8 cut(s)	426, 681, 711, 954, 1055, 2094, 2155, 2220
BstF5I	GGATG	2 cut(s)	380, 871
BstFNI	CGCG	2 cut(s)	153, 2054
BstHHI	GCGC	2 cut(s)	2054, 2056
BstMAI	GTCTC	3 cut(s)	1110, 1936, 2014
BstMWI	GCNNNNNNNGC	5 cut(s)	875, 1081, 1523, 2044, 2053
BstNI	CCWGG	4 cut(s)	177, 516, 2049, 2163
BstNSI	RCATGY	2 cut(s)	1832, 2235
BstSCI	CCNGG	5 cut(s)	175, 514, 1934, 2047, 2161
BstSFI	CTRYAG	1 cut(s)	2181
BstUI	CGCG	2 cut(s)	153, 2054
BstV1I	GCAGC	7 cut(s)	83, 1043, 1526, 1812, 1966, 2215, 2227
BstX2I	RGATCY	3 cut(s)	286, 743, 2177
BstXI	CCANNNNNNTGG	2 cut(s)	522, 1750
BstYI	RGATCY	3 cut(s)	286, 743, 2177
Bsu15I	ATCGAT	1 cut(s)	387
BsuI	GTATCC	1 cut(s)	1203
BsuRI	GGCC	3 cut(s)	817, 1766, 1940
BsuTUI	ATCGAT	1 cut(s)	387
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	380, 871
BtsIMutI	CAGTG	6 cut(s)	116, 480, 987, 1077, 1797, 2115
Cac8I	GCNNGC	6 cut(s)	131, 151, 408, 1830, 2054, 2233
CaiI	CAGNNNCTG	1 cut(s)	1390
CciI	TCATGA	2 cut(s)	871, 1611
CfoI	GCGC	2 cut(s)	2054, 2056
Cfr10I	RCCGGY	1 cut(s)	2089
Cfr13I	GGNCC	1 cut(s)	1938
ClaI	ATCGAT	1 cut(s)	387
CseI	GACGC	2 cut(s)	200, 885
CsiI	ACCWGGT	1 cut(s)	175
Csp6I	GTAC	6 cut(s)	221, 469, 1131, 1175, 1393, 1402
CviAII	CATG	7 cut(s)	872, 1338, 1612, 1829, 1887, 2032, 2232
CviQI	GTAC	6 cut(s)	221, 469, 1131, 1175, 1393, 1402
DdeI	CTNAG	8 cut(s)	426, 681, 711, 954, 1055, 2094, 2155, 2220
EaeI	YGGCCR	1 cut(s)	815
Eam1104I	CTCTTC	2 cut(s)	48, 1725
EarI	CTCTTC	2 cut(s)	48, 1725
EciI	GGCGGA	3 cut(s)	387, 2034, 2140
Ecl136II	GAGCTC	2 cut(s)	9, 1479
Eco130I	CCWWGG	3 cut(s)	1200, 1412, 1461
Eco147I	AGGCCT	1 cut(s)	1766
Eco24I	GRGCYC	3 cut(s)	11, 98, 1481
Eco31I	GGTCTC	1 cut(s)	2014
Eco32I	GATATC	1 cut(s)	319
Eco53kI	GAGCTC	2 cut(s)	9, 1479
Eco57I	CTGAAG	1 cut(s)	1706
EcoICRI	GAGCTC	2 cut(s)	9, 1479
EcoRI	GAATTC	1 cut(s)	789
EcoRII	CCWGG	4 cut(s)	175, 514, 2047, 2161
EcoRV	GATATC	1 cut(s)	319
EcoT14I	CCWWGG	3 cut(s)	1200, 1412, 1461
EcoT22I	ATGCAT	1 cut(s)	1834
EcoT38I	GRGCYC	3 cut(s)	11, 98, 1481
ErhI	CCWWGG	3 cut(s)	1200, 1412, 1461
FaeI	CATG	7 cut(s)	875, 1341, 1615, 1832, 1890, 2035, 2235
FalI	AAGNNNNNCTT	2 cut(s)	674, 706
FaqI	GGGAC	2 cut(s)	1444, 1904
FatI	CATG	7 cut(s)	871, 1337, 1611, 1828, 1886, 2031, 2231
FauI	CCCGC	1 cut(s)	146
FauNDI	CATATG	1 cut(s)	812
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	8 cut(s)	72, 134, 1032, 1515, 1826, 1980, 2216, 2229
FokI	GGATG	2 cut(s)	387, 878
FriOI	GRGCYC	3 cut(s)	11, 98, 1481
Fsp4HI	GCNGC	8 cut(s)	72, 134, 1032, 1515, 1826, 1980, 2216, 2229
FspBI	CTAG	6 cut(s)	105, 183, 794, 1604, 1983, 2025
GlaI	GCGC	2 cut(s)	2053, 2055
GluI	GCNGC	8 cut(s)	72, 134, 1032, 1515, 1826, 1980, 2216, 2229
GsaI	CCCAGC	2 cut(s)	1384, 1431
GsuI	CTGGAG	4 cut(s)	1053, 1207, 1821, 2145
HaeIII	GGCC	3 cut(s)	817, 1766, 1940
HapII	CCGG	4 cut(s)	629, 786, 1935, 2090
HgaI	GACGC	2 cut(s)	200, 885
HhaI	GCGC	2 cut(s)	2054, 2056
Hin1II	CATG	7 cut(s)	875, 1341, 1615, 1832, 1890, 2035, 2235
Hin6I	GCGC	2 cut(s)	2052, 2054
HinP1I	GCGC	2 cut(s)	2052, 2054
HincII	GTYRAC	2 cut(s)	355, 2061
HindII	GTYRAC	2 cut(s)	355, 2061
HinfI	GANTC	6 cut(s)	757, 1300, 1387, 1408, 1615, 2104
HpaI	GTTAAC	2 cut(s)	355, 2061
HpaII	CCGG	4 cut(s)	629, 786, 1935, 2090
HphI	GGTGA	6 cut(s)	373, 618, 919, 1043, 1712, 2161
Hpy166II	GTNNAC	8 cut(s)	204, 221, 355, 381, 1623, 1670, 1678, 2061
Hpy8I	GTNNAC	8 cut(s)	204, 221, 355, 381, 1623, 1670, 1678, 2061
HpyAV	CCTTC	6 cut(s)	257, 328, 597, 732, 1784, 2157
HpyCH4III	ACNGT	9 cut(s)	484, 650, 938, 991, 1255, 1860, 1912, 2065, 2185
HpyCH4V	TGCA	8 cut(s)	410, 1075, 1514, 1526, 1556, 1828, 1832, 2231
HpyF10VI	GCNNNNNNNGC	5 cut(s)	875, 1081, 1523, 2044, 2053
HpyF3I	CTNAG	8 cut(s)	426, 681, 711, 954, 1055, 2094, 2155, 2220
Hsp92II	CATG	7 cut(s)	875, 1341, 1615, 1832, 1890, 2035, 2235
HspAI	GCGC	2 cut(s)	2052, 2054
Kpn2I	TCCGGA	1 cut(s)	785
Ksp22I	TGATCA	1 cut(s)	88
KspAI	GTTAAC	2 cut(s)	355, 2061
Lsp1109I	GCAGC	7 cut(s)	83, 1043, 1526, 1812, 1966, 2215, 2227
LweI	GCATC	3 cut(s)	856, 1543, 1693
MabI	ACCWGGT	1 cut(s)	175
MaeI	CTAG	6 cut(s)	105, 183, 794, 1604, 1983, 2025
MaeIII	GTNAC	4 cut(s)	25, 820, 1546, 1816
MfeI	CAATTG	1 cut(s)	2081
MflI	RGATCY	3 cut(s)	286, 743, 2177
MhlI	GDGCHC	4 cut(s)	11, 19, 98, 1481
MlsI	TGGCCA	1 cut(s)	817
MluNI	TGGCCA	1 cut(s)	817
MlyI	GAGTC	1 cut(s)	1381
MmeI	TCCRAC	2 cut(s)	274, 1931
MnlI	CCTC	8 cut(s)	72, 625, 793, 1648, 1777, 2085, 2089, 2214
Mox20I	TGGCCA	1 cut(s)	817
Mph1103I	ATGCAT	1 cut(s)	1834
MroI	TCCGGA	1 cut(s)	785
MscI	TGGCCA	1 cut(s)	817
Msp20I	TGGCCA	1 cut(s)	817
MspA1I	CMGCKG	1 cut(s)	1979
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	4 cut(s)	629, 786, 1935, 2090
MspR9I	CCNGG	5 cut(s)	177, 516, 1936, 2049, 2163
MunI	CAATTG	1 cut(s)	2081
MvaI	CCWGG	4 cut(s)	177, 516, 2049, 2163
MvnI	CGCG	2 cut(s)	153, 2054
MwoI	GCNNNNNNNGC	5 cut(s)	875, 1081, 1523, 2044, 2053
NciI	CCSGG	1 cut(s)	1936
NdeI	CATATG	1 cut(s)	812
NlaIII	CATG	7 cut(s)	875, 1341, 1615, 1832, 1890, 2035, 2235
NlaIV	GGNNCC	3 cut(s)	97, 1939, 2100
NmuCI	GTSAC	1 cut(s)	820
NsiI	ATGCAT	1 cut(s)	1834
NspI	RCATGY	2 cut(s)	1832, 2235
PaeI	GCATGC	2 cut(s)	1832, 2235
PagI	TCATGA	2 cut(s)	871, 1611
PauI	GCGCGC	1 cut(s)	2052
PceI	AGGCCT	1 cut(s)	1766
PfeI	GAWTC	5 cut(s)	757, 1300, 1408, 1615, 2104
PkrI	GCNGC	8 cut(s)	73, 135, 1033, 1516, 1827, 1981, 2217, 2230
PleI	GAGTC	1 cut(s)	1381
PpsI	GAGTC	1 cut(s)	1381
PshBI	ATTAAT	1 cut(s)	1563
PsiI	TTATAA	1 cut(s)	2013
Psp124BI	GAGCTC	2 cut(s)	11, 1481
Psp6I	CCWGG	4 cut(s)	175, 514, 2047, 2161
PspFI	CCCAGC	2 cut(s)	1380, 1427
PspGI	CCWGG	4 cut(s)	175, 514, 2047, 2161
PspN4I	GGNNCC	3 cut(s)	97, 1939, 2100
PspPI	GGNCC	1 cut(s)	1938
PstNI	CAGNNNCTG	1 cut(s)	1390
PsuI	RGATCY	3 cut(s)	286, 743, 2177
PteI	GCGCGC	1 cut(s)	2052
PvuII	CAGCTG	1 cut(s)	1979
RsaI	GTAC	6 cut(s)	222, 470, 1132, 1176, 1394, 1403
RsaNI	GTAC	6 cut(s)	221, 469, 1131, 1175, 1393, 1402
SacI	GAGCTC	2 cut(s)	11, 1481
SatI	GCNGC	8 cut(s)	72, 134, 1032, 1515, 1826, 1980, 2216, 2229
Sau96I	GGNCC	1 cut(s)	1938
SchI	GAGTC	1 cut(s)	1381
ScrFI	CCNGG	5 cut(s)	177, 516, 1936, 2049, 2163
SduI	GDGCHC	4 cut(s)	11, 19, 98, 1481
SexAI	ACCWGGT	1 cut(s)	175
SfaNI	GCATC	3 cut(s)	856, 1543, 1693
SfcI	CTRYAG	1 cut(s)	2181
SmlI	CTYRAG	3 cut(s)	398, 565, 1881
SmoI	CTYRAG	3 cut(s)	398, 565, 1881
SpeI	ACTAGT	1 cut(s)	104
SphI	GCATGC	2 cut(s)	1832, 2235
SseBI	AGGCCT	1 cut(s)	1766
SsiI	CCGC	5 cut(s)	134, 153, 372, 2045, 2151
SspI	AATATT	1 cut(s)	532
SspMI	CTAG	6 cut(s)	105, 183, 794, 1604, 1983, 2025
SstI	GAGCTC	2 cut(s)	11, 1481
StuI	AGGCCT	1 cut(s)	1766
StyD4I	CCNGG	5 cut(s)	175, 514, 1934, 2047, 2161
StyI	CCWWGG	3 cut(s)	1200, 1412, 1461
TaaI	ACNGT	9 cut(s)	484, 650, 938, 991, 1255, 1860, 1912, 2065, 2185
TaqI	TCGA	6 cut(s)	387, 442, 1097, 1179, 1686, 1854
TatI	WGTACW	4 cut(s)	1130, 1174, 1392, 1401
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	5 cut(s)	757, 1300, 1408, 1615, 2104
TscAI	CASTG	6 cut(s)	116, 487, 994, 1077, 1804, 2115
TseFI	GTSAC	1 cut(s)	820
TseI	GCWGC	7 cut(s)	71, 1031, 1514, 1825, 1979, 2215, 2228
Tsp45I	GTSAC	1 cut(s)	820
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	6 cut(s)	116, 487, 994, 1077, 1804, 2115
Vha464I	CTTAAG	1 cut(s)	398
VspI	ATTAAT	1 cut(s)	1563
XapI	RAATTY	4 cut(s)	273, 502, 789, 1646
XceI	RCATGY	2 cut(s)	1832, 2235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	519
XspI	CTAG	6 cut(s)	105, 183, 794, 1604, 1983, 2025
Zsp2I	ATGCAT	1 cut(s)	1834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.