Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002638

Physical Location & Seq

Genomic Coordinates Reverse (-)

17959718 .. 17961259

Gene Structure 1542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g15140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCTGCCTTTTCAAAGGGGGCCTATTCATGGAGTGTTGAGCTGGGACAACAAACTTCTTGGTGCTCAGGTACTTCTAACCCGTTTGAGGTTATTCATAAATCCTGGGTACCCATATAGAGAAACTTCGAGAAGATTTCACAATGAGGCTAACACAATCATGTGCTCATACCTCCCATATTTCACAACCTTCAATAGGACAAAAGGAGGCTTAATCCAACTGAATCATGGAAAACCAAAACCTCTTCAATATATAGTCAACGCAGCCTTCTTACCTACTCTCTACAGTGATTATCTTGAATCAGCAGATAATACCAATTCAGATGGGATGTTTTGTGGACCAAGCTTCTATTCTATTGATGTCCTACGTGAATTTGCTAAAACCCAAATTAATTACATACTGGGAAAATATCCCAAAAAATTGAGCTATGTTGTAGGGATTGGTAATCGTTTCCCAACACATGTCCACCACAGAGGTGCATCTATTCCGAATAACAAGATCAAGTACAGTTGCGATGGGGGTTGGAAATGGAGGGACACTTCAAAGCAAAACCCTAACACAATTGATGGTGCTATGGTTGCTGGCCCAGACAAAGATGATGGCTTCCATGATGTTTGTACTAATAACAATTACACTGAGGCTACTCTGGCGGGAAATGCAGGTTTAGTAGCAGCACTTGTTGCTTTGCCAGGAGACAAAGCTACTGGGATTGACAAAAATACCATTTTCACCGCCATTCCGCCGATGTTTCCAACTCCACCACCACCGCCGGCGTCACGAAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008152 GO:0008810 GO:0009058 GO:0009059 GO:0009250 GO:0009504 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9 Mlo

Protein Analysis

263

Amino Acids

29.07

Weight (kDa)

9.34

Isoelectric Point (pI)

24.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	13 - 226	5.9e-46	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24260 AT4G24260 AT4G24260 AT5G49720
fragaria_vesca	FvH4_5g27130 FvH4_5g27130 FvH4_5g27130 FvH4_5g27130
malus_domestica	MD04G1170800.v1.1 MD08G1250900.v1.1 MD15G1445800.v1.1
prunus_persica	Prupe.1G587900_v2.0.a1 Prupe.3G082700_v2.0.a1
pyrus_communis	pycom04g15140 pycom08g21760 pycom15g39260 pycom15g39270
rosa_chinensis	RchiOBHm_Chr7g0218131
rosa_laevigata	RLG00000002397 RLG00000003204 RLG00000029460
rosa_multiflora	Rmu_sc0000054.1_g000022 Rmu_sc0003627.1_g000012 Rmu_sc0031732.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233940 Rroxscaffold_3G00241280
rosa_rugosa	Rorug01G0072800 Rorug02G0384500 Rorug04G0442400 Rorug07G0174400
rosa_samantha	Rh4CG311700 Rh4DG293000 Rh6BG152200 Rh6DG136400 Rh7AG316800 Rh7BG307900 Rh7BG308000 Rh7CG333700 Rh7DG315700
rosa_wichuraiana	Rw7G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	650
Acc65I	GGTACC	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	108
AciI	CCGC	4 cut(s)	650, 732, 740, 767
AcsI	RAATTY	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	773
AfaI	GTAC	4 cut(s)	72, 110, 506, 619
AfiI	CCNNNNNNNGG	3 cut(s)	29, 87, 195
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	5 cut(s)	14, 193, 248, 299, 543
AjnI	CCWGG	2 cut(s)	103, 688
AjuI	GAANNNNNNNTTGG	2 cut(s)	334, 366
AleI	CACNNNNGTG	1 cut(s)	474
AluBI	AGCT	4 cut(s)	42, 345, 426, 701
AluI	AGCT	4 cut(s)	42, 345, 426, 701
Alw21I	GWGCWC	2 cut(s)	67, 167
Alw26I	GTCTC	1 cut(s)	687
AoxI	GGCC	2 cut(s)	20, 583
ApeKI	GCWGC	3 cut(s)	4, 263, 671
ApoI	RAATTY	1 cut(s)	371
AseI	ATTAAT	1 cut(s)	390
Asp718I	GGTACC	1 cut(s)	108
AspS9I	GGNCC	3 cut(s)	20, 338, 584
AsuHPI	GGTGA	1 cut(s)	721
AvaII	GGWCC	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	108
Bbv12I	GWGCWC	2 cut(s)	67, 167
BbvI	GCAGC	2 cut(s)	275, 683
BccI	CCATC	4 cut(s)	317, 509, 560, 593
BciT130I	CCWGG	2 cut(s)	105, 690
BcoDI	GTCTC	1 cut(s)	687
BfmI	CTRYAG	1 cut(s)	283
BfuAI	ACCTGC	1 cut(s)	650
BisI	GCNGC	3 cut(s)	5, 264, 672
BlsI	GCNGC	3 cut(s)	6, 265, 673
Bme1390I	CCNGG	2 cut(s)	105, 690
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	3 cut(s)	20, 338, 584
BmiI	GGNNCC	2 cut(s)	21, 110
BmrFI	CCNGG	2 cut(s)	105, 690
BmrI	ACTGGG	2 cut(s)	410, 714
BmsI	GCATC	1 cut(s)	488
BmuI	ACTGGG	2 cut(s)	410, 714
Bpu10I	CCTNAGC	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	773
BsaJI	CCNNGG	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 87, 195
Bse118I	RCCGGY	1 cut(s)	769
Bse1I	ACTGG	2 cut(s)	405, 709
BseBI	CCWGG	2 cut(s)	105, 690
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	1 cut(s)	333
BseLI	CCNNNNNNNGG	3 cut(s)	29, 87, 195
BseMII	CTCAG	2 cut(s)	80, 627
BseNI	ACTGG	2 cut(s)	405, 709
BseXI	GCAGC	2 cut(s)	275, 683
BseYI	CCCAGC	1 cut(s)	42
BshFI	GGCC	2 cut(s)	22, 585
BshNI	GGYRCC	1 cut(s)	108
BsiHKAI	GWGCWC	2 cut(s)	67, 167
BsiSI	CCGG	1 cut(s)	770
BslFI	GGGAC	2 cut(s)	59, 548
BslI	CCNNNNNNNGG	3 cut(s)	29, 87, 195
BsmAI	GTCTC	1 cut(s)	687
BsmFI	GGGAC	2 cut(s)	59, 548
BsnI	GGCC	2 cut(s)	22, 585
Bsp1286I	GDGCHC	2 cut(s)	67, 167
Bsp143I	GATC	1 cut(s)	498
BspACI	CCGC	4 cut(s)	650, 732, 740, 767
BspANI	GGCC	2 cut(s)	22, 585
BspCNI	CTCAG	2 cut(s)	79, 628
BspLI	GGNNCC	2 cut(s)	21, 110
BspMI	ACCTGC	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	769
BsrI	ACTGG	2 cut(s)	405, 709
BssAI	RCCGGY	1 cut(s)	769
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	1 cut(s)	498
BssNI	GRCGYC	1 cut(s)	773
Bst2UI	CCWGG	2 cut(s)	105, 690
Bst4CI	ACNGT	2 cut(s)	287, 509
Bst6I	CTCTTC	1 cut(s)	249
BstACI	GRCGYC	1 cut(s)	773
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstBAI	YACGTR	1 cut(s)	368
BstC8I	GCNNGC	2 cut(s)	583, 771
BstDEI	CTNAG	2 cut(s)	66, 636
BstENI	CCTNNNNNAGG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	333
BstKTI	GATC	1 cut(s)	501
BstMAI	GTCTC	1 cut(s)	687
BstMBI	GATC	1 cut(s)	498
BstMWI	GCNNNNNNNGC	4 cut(s)	578, 647, 656, 680
BstNI	CCWGG	2 cut(s)	105, 690
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	2 cut(s)	103, 688
BstSFI	CTRYAG	1 cut(s)	283
BstV1I	GCAGC	2 cut(s)	275, 683
BsuRI	GGCC	2 cut(s)	22, 585
BtgZI	GCGATG	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	292, 633
BveI	ACCTGC	1 cut(s)	650
Cac8I	GCNNGC	2 cut(s)	583, 771
Cfr10I	RCCGGY	1 cut(s)	769
Cfr13I	GGNCC	3 cut(s)	20, 338, 584
CseI	GACGC	1 cut(s)	762
Csp6I	GTAC	4 cut(s)	71, 109, 505, 618
CviAII	CATG	6 cut(s)	29, 160, 227, 461, 608, 786
CviQI	GTAC	4 cut(s)	71, 109, 505, 618
DdeI	CTNAG	2 cut(s)	66, 636
DpnI	GATC	1 cut(s)	500
DpnII	GATC	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
EciI	GGCGGA	1 cut(s)	729
Eco47I	GGWCC	1 cut(s)	338
EcoNI	CCTNNNNNAGG	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	20
EcoRII	CCWGG	2 cut(s)	103, 688
FaeI	CATG	6 cut(s)	32, 163, 230, 464, 611, 789
FaqI	GGGAC	2 cut(s)	59, 548
FatI	CATG	6 cut(s)	28, 159, 226, 460, 607, 785
FauI	CCCGC	1 cut(s)	643
Fnu4HI	GCNGC	3 cut(s)	5, 264, 672
FokI	GGATG	1 cut(s)	340
Fsp4HI	GCNGC	3 cut(s)	5, 264, 672
GluI	GCNGC	3 cut(s)	5, 264, 672
GsaI	CCCAGC	1 cut(s)	46
HaeIII	GGCC	2 cut(s)	22, 585
HapII	CCGG	1 cut(s)	770
HgaI	GACGC	1 cut(s)	762
Hin1I	GRCGYC	1 cut(s)	773
Hin1II	CATG	6 cut(s)	32, 163, 230, 464, 611, 789
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	343
HinfI	GANTC	2 cut(s)	223, 299
HpaII	CCGG	1 cut(s)	770
HphI	GGTGA	1 cut(s)	721
Hpy166II	GTNNAC	3 cut(s)	259, 338, 466
Hpy188I	TCNGA	2 cut(s)	322, 489
Hpy188III	TCNNGA	3 cut(s)	129, 296, 777
Hpy8I	GTNNAC	3 cut(s)	259, 338, 466
HpyAV	CCTTC	2 cut(s)	199, 277
HpyCH4III	ACNGT	2 cut(s)	287, 509
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	2 cut(s)	479, 659
HpyF10VI	GCNNNNNNNGC	4 cut(s)	578, 647, 656, 680
HpyF3I	CTNAG	2 cut(s)	66, 636
HpySE526I	ACGT	1 cut(s)	367
Hsp92I	GRCGYC	1 cut(s)	773
Hsp92II	CATG	6 cut(s)	32, 163, 230, 464, 611, 789
KpnI	GGTACC	1 cut(s)	112
KroI	GCCGGC	1 cut(s)	769
KroNI	GCCGGC	1 cut(s)	771
Kzo9I	GATC	1 cut(s)	498
Lsp1109I	GCAGC	2 cut(s)	275, 683
LweI	GCATC	1 cut(s)	488
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	774
MalI	GATC	1 cut(s)	500
MboI	GATC	1 cut(s)	498
MboII	GAAGA	2 cut(s)	144, 236
MfeI	CAATTG	1 cut(s)	561
MhlI	GDGCHC	2 cut(s)	67, 167
MluCI	AATT	7 cut(s)	316, 371, 387, 391, 419, 561, 628
MmeI	TCCRAC	3 cut(s)	241, 503, 776
MnlI	CCTC	8 cut(s)	81, 139, 182, 200, 252, 467, 525, 631
MreI	CGCCGGCG	1 cut(s)	769
MroNI	GCCGGC	1 cut(s)	769
MseI	TTAA	2 cut(s)	212, 390
MslI	CAYNNNNRTG	2 cut(s)	158, 474
MspI	CCGG	1 cut(s)	770
MspR9I	CCNGG	2 cut(s)	105, 690
MunI	CAATTG	1 cut(s)	561
MvaI	CCWGG	2 cut(s)	105, 690
MwoI	GCNNNNNNNGC	4 cut(s)	578, 647, 656, 680
NaeI	GCCGGC	1 cut(s)	771
NdeII	GATC	1 cut(s)	498
NgoMIV	GCCGGC	1 cut(s)	769
NlaIII	CATG	6 cut(s)	32, 163, 230, 464, 611, 789
NlaIV	GGNNCC	2 cut(s)	21, 110
NmuCI	GTSAC	1 cut(s)	774
NspI	RCATGY	1 cut(s)	464
OliI	CACNNNNGTG	1 cut(s)	474
PciI	ACATGT	1 cut(s)	460
PdiI	GCCGGC	1 cut(s)	771
PfeI	GAWTC	2 cut(s)	223, 299
PkrI	GCNGC	3 cut(s)	6, 265, 673
Ppu21I	YACGTR	1 cut(s)	368
PscI	ACATGT	1 cut(s)	460
PshBI	ATTAAT	1 cut(s)	390
Psp6I	CCWGG	2 cut(s)	103, 688
PspFI	CCCAGC	1 cut(s)	42
PspGI	CCWGG	2 cut(s)	103, 688
PspN4I	GGNNCC	2 cut(s)	21, 110
PspPI	GGNCC	3 cut(s)	20, 338, 584
RsaI	GTAC	4 cut(s)	72, 110, 506, 619
RsaNI	GTAC	4 cut(s)	71, 109, 505, 618
RseI	CAYNNNNRTG	2 cut(s)	158, 474
SaqAI	TTAA	2 cut(s)	212, 390
SatI	GCNGC	3 cut(s)	5, 264, 672
Sau3AI	GATC	1 cut(s)	498
Sau96I	GGNCC	3 cut(s)	20, 338, 584
ScrFI	CCNGG	2 cut(s)	105, 690
SduI	GDGCHC	2 cut(s)	67, 167
SfaNI	GCATC	1 cut(s)	488
SfcI	CTRYAG	1 cut(s)	283
SgrAI	CRCCGGYG	1 cut(s)	769
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	2 cut(s)	158, 474
Sse9I	AATT	7 cut(s)	316, 371, 387, 391, 419, 561, 628
SsiI	CCGC	4 cut(s)	650, 732, 740, 767
StyD4I	CCNGG	2 cut(s)	103, 688
TaaI	ACNGT	2 cut(s)	287, 509
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	128
TasI	AATT	7 cut(s)	316, 371, 387, 391, 419, 561, 628
TatI	WGTACW	2 cut(s)	504, 617
TfiI	GAWTC	2 cut(s)	223, 299
Tru1I	TTAA	2 cut(s)	212, 390
Tru9I	TTAA	2 cut(s)	212, 390
TscAI	CASTG	2 cut(s)	292, 640
TseFI	GTSAC	1 cut(s)	774
TseI	GCWGC	3 cut(s)	4, 263, 671
Tsp45I	GTSAC	1 cut(s)	774
TspDTI	ATGAA	2 cut(s)	17, 85
TspRI	CASTG	2 cut(s)	292, 640
VpaK11BI	GGWCC	1 cut(s)	338
VspI	ATTAAT	1 cut(s)	390
XagI	CCTNNNNNAGG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	371
XceI	RCATGY	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.