Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002638

Physical Location & Seq

Genomic Coordinates Reverse (-)

45559409 .. 45561715

Gene Structure 2307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003204

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTACGACAGGGATCCATGGGGCGGCCCGCTGGAGATCAACGCGGCAGACTCGGCCACCGACCACGACCGCAGCCGGAACCTGCAGGACCTCGACAGGGAAGCGCTGTCGTCTGGGCAGCTCGACGAGACGCAACAGAGCTGGCTGCTGGGCCCCACCGGGGAGCAGAAGAAGAAGAAGTACGTGGATCTGGGATGCGTCATCGTCAGCCGCAAGATCTTTATCTGGACGGTAGGGACGCTCCTCGTCTCCGGCTTGCTCGCCGGACTGATCGTCCTCATCGTCAAGACCGTGCCGCGTCACCACCATGCCAAGCCTCCTCCGGACAACTACACTCTCGCTCTCCACAAGGCTCTCATGTTCTTCAACGCTCAGAAATGTGGTCGCATTGGGGCTGGCGGGCACACAACTTGCTCTGGTGGAGTCAGTTTGGATCCTTTATCTTTCAGGGTTGTTGATGATGTCCACTTGTTAGCATCCATTGCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008152 GO:0008810 GO:0009058 GO:0009059 GO:0009250 GO:0009504 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042538 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0051704 GO:0051707 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

164

Amino Acids

17.74

Weight (kDa)

7.05

Isoelectric Point (pI)

26.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24260 AT4G24260 AT4G24260 AT5G49720
fragaria_vesca	FvH4_5g27130 FvH4_5g27130 FvH4_5g27130 FvH4_5g27130
malus_domestica	MD04G1170800.v1.1 MD08G1250900.v1.1 MD15G1445800.v1.1
prunus_persica	Prupe.1G587900_v2.0.a1 Prupe.3G082700_v2.0.a1
pyrus_communis	pycom04g15140 pycom08g21760 pycom15g39260 pycom15g39270
rosa_chinensis	RchiOBHm_Chr7g0218131
rosa_laevigata	RLG00000002397 RLG00000003204 RLG00000029460
rosa_multiflora	Rmu_sc0000054.1_g000022 Rmu_sc0003627.1_g000012 Rmu_sc0031732.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233940 Rroxscaffold_3G00241280
rosa_rugosa	Rorug01G0072800 Rorug02G0384500 Rorug04G0442400 Rorug07G0174400
rosa_samantha	Rh4CG311700 Rh4DG293000 Rh6BG152200 Rh6DG136400 Rh7AG316800 Rh7BG307900 Rh7BG308000 Rh7CG333700 Rh7DG315700
rosa_wichuraiana	Rw7G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	90
AccII	CGCG	2 cut(s)	44, 298
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	7 cut(s)	24, 29, 44, 70, 211, 296, 399
AclWI	GGATC	5 cut(s)	8, 21, 195, 428, 441
AcoI	YGGCCR	1 cut(s)	54
AfaI	GTAC	2 cut(s)	5, 182
AfeI	AGCGCT	1 cut(s)	105
AfiI	CCNNNNNNNGG	3 cut(s)	23, 97, 160
AgsI	TTSAA	1 cut(s)	367
AhdI	GACNNNNNGTC	1 cut(s)	272
AluBI	AGCT	2 cut(s)	121, 141
AluI	AGCT	2 cut(s)	121, 141
Alw26I	GTCTC	2 cut(s)	122, 253
AlwI	GGATC	5 cut(s)	8, 21, 195, 428, 441
Aor13HI	TCCGGA	1 cut(s)	322
Aor51HI	AGCGCT	1 cut(s)	105
AoxI	GGCC	3 cut(s)	25, 54, 151
ApaI	GGGCCC	1 cut(s)	155
ApeKI	GCWGC	3 cut(s)	72, 118, 145
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	4 cut(s)	26, 88, 151, 152
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	88
BaeGI	GKGCMC	2 cut(s)	155, 405
BamHI	GGATCC	2 cut(s)	13, 433
BanII	GRGCYC	1 cut(s)	155
BarI	GAAGNNNNNNTAC	2 cut(s)	164, 196
BbvI	GCAGC	3 cut(s)	84, 130, 132
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	122, 253
BfmI	CTRYAG	1 cut(s)	83
BfoI	RGCGCY	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	90
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	7 cut(s)	25, 45, 73, 119, 146, 211, 296
BlsI	GCNGC	7 cut(s)	26, 46, 74, 120, 147, 212, 297
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	88
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmgT120I	GGNCC	4 cut(s)	26, 88, 151, 152
BmiI	GGNNCC	5 cut(s)	15, 80, 153, 154, 435
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	185, 485
BpmI	CTGGAG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	160
BsaAI	YACGTR	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	17, 159
BsaWI	WCCGGW	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 97, 160
Bse3DI	GCAATG	1 cut(s)	480
Bse8I	GATNNNNATC	1 cut(s)	221
BseAI	TCCGGA	1 cut(s)	322
BseDI	CCNNGG	2 cut(s)	17, 159
BseGI	GGATG	2 cut(s)	200, 476
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	3 cut(s)	23, 97, 160
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	386
BseRI	GAGGAG	2 cut(s)	233, 309
BseSI	GKGCMC	2 cut(s)	155, 405
BseXI	GCAGC	3 cut(s)	84, 130, 132
BseYI	CCCAGC	1 cut(s)	148
Bsh1236I	CGCG	2 cut(s)	44, 298
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	3 cut(s)	27, 56, 153
BsiEI	CGRYCG	1 cut(s)	70
BsiSI	CCGG	5 cut(s)	76, 159, 252, 264, 323
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	3 cut(s)	23, 97, 160
BsmAI	GTCTC	2 cut(s)	122, 253
BsmBI	CGTCTC	2 cut(s)	122, 253
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	3 cut(s)	27, 56, 153
Bsp120I	GGGCCC	1 cut(s)	151
Bsp1286I	GDGCHC	2 cut(s)	155, 405
Bsp13I	TCCGGA	1 cut(s)	322
Bsp143I	GATC	6 cut(s)	13, 36, 187, 216, 270, 433
Bsp19I	CCATGG	1 cut(s)	17
BspACI	CCGC	7 cut(s)	24, 29, 44, 70, 211, 296, 399
BspANI	GGCC	3 cut(s)	27, 56, 153
BspCNI	CTCAG	1 cut(s)	385
BspEI	TCCGGA	1 cut(s)	322
BspFNI	CGCG	2 cut(s)	44, 298
BspLI	GGNNCC	5 cut(s)	15, 80, 153, 154, 435
BspMAI	CTGCAG	1 cut(s)	87
BspMI	ACCTGC	1 cut(s)	90
BspPI	GGATC	5 cut(s)	8, 21, 195, 428, 441
BsrDI	GCAATG	1 cut(s)	480
BssECI	CCNNGG	2 cut(s)	17, 159
BssMI	GATC	6 cut(s)	13, 36, 187, 216, 270, 433
BssT1I	CCWWGG	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	232, 292
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	6 cut(s)	29, 143, 257, 261, 397, 401
BstDEI	CTNAG	1 cut(s)	372
BstDSI	CCRYGG	1 cut(s)	17
BstF5I	GGATG	2 cut(s)	200, 476
BstFNI	CGCG	2 cut(s)	44, 298
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	6 cut(s)	16, 39, 190, 219, 273, 436
BstMAI	GTCTC	2 cut(s)	122, 253
BstMBI	GATC	6 cut(s)	13, 36, 187, 216, 270, 433
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 482
BstSCI	CCNGG	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	83
BstSLI	GKGCMC	2 cut(s)	155, 405
BstUI	CGCG	2 cut(s)	44, 298
BstV1I	GCAGC	3 cut(s)	84, 130, 132
BstX2I	RGATCY	4 cut(s)	13, 187, 216, 433
BstYI	RGATCY	4 cut(s)	13, 187, 216, 433
BsuRI	GGCC	3 cut(s)	27, 56, 153
BtgI	CCRYGG	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	200, 476
BveI	ACCTGC	1 cut(s)	90
Cac8I	GCNNGC	6 cut(s)	29, 143, 257, 261, 397, 401
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	4 cut(s)	26, 88, 151, 152
CseI	GACGC	4 cut(s)	139, 187, 247, 287
Csp6I	GTAC	2 cut(s)	4, 181
CviAII	CATG	3 cut(s)	18, 308, 358
CviQI	GTAC	2 cut(s)	4, 181
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	6 cut(s)	15, 38, 189, 218, 272, 435
DpnII	GATC	6 cut(s)	13, 36, 187, 216, 270, 433
DriI	GACNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	1 cut(s)	54
Eam1105I	GACNNNNNGTC	1 cut(s)	272
Eco130I	CCWWGG	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	88
Eco47III	AGCGCT	1 cut(s)	105
EcoO109I	RGGNCCY	2 cut(s)	88, 152
EcoT14I	CCWWGG	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	17
Esp3I	CGTCTC	2 cut(s)	122, 253
FaeI	CATG	3 cut(s)	21, 311, 361
FaiI	YATR	4 cut(s)	19, 309, 359, 490
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	3 cut(s)	17, 307, 357
FauI	CCCGC	2 cut(s)	36, 392
Fnu4HI	GCNGC	7 cut(s)	25, 45, 73, 119, 146, 211, 296
FokI	GGATG	2 cut(s)	207, 463
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	7 cut(s)	25, 45, 73, 119, 146, 211, 296
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	7 cut(s)	25, 45, 73, 119, 146, 211, 296
GsaI	CCCAGC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	3 cut(s)	27, 56, 153
HapII	CCGG	5 cut(s)	76, 159, 252, 264, 323
HgaI	GACGC	4 cut(s)	139, 187, 247, 287
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	21, 311, 361
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	2 cut(s)	50, 423
HpaII	CCGG	5 cut(s)	76, 159, 252, 264, 323
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	3 cut(s)	226, 286, 323
Hpy8I	GTNNAC	1 cut(s)	466
Hpy99I	CGWCG	1 cut(s)	128
HpyCH4III	ACNGT	2 cut(s)	232, 292
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 482
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	21, 311, 361
HspAI	GCGC	1 cut(s)	104
Kpn2I	TCCGGA	1 cut(s)	322
Kzo9I	GATC	6 cut(s)	13, 36, 187, 216, 270, 433
LmnI	GCTCC	2 cut(s)	163, 246
Lsp1109I	GCAGC	3 cut(s)	84, 130, 132
LweI	GCATC	2 cut(s)	185, 485
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	6 cut(s)	15, 38, 189, 218, 272, 435
MboI	GATC	6 cut(s)	13, 36, 187, 216, 270, 433
MboII	GAAGA	4 cut(s)	181, 184, 187, 355
MflI	RGATCY	4 cut(s)	13, 187, 216, 433
MhlI	GDGCHC	2 cut(s)	155, 405
MlyI	GAGTC	2 cut(s)	44, 432
MnlI	CCTC	5 cut(s)	101, 254, 287, 327, 330
MroI	TCCGGA	1 cut(s)	322
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	5 cut(s)	76, 159, 252, 264, 323
MspR9I	CCNGG	1 cut(s)	160
MvnI	CGCG	2 cut(s)	44, 298
MwoI	GCNNNNNNNGC	2 cut(s)	53, 482
NciI	CCSGG	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	6 cut(s)	13, 36, 187, 216, 270, 433
NlaIII	CATG	3 cut(s)	21, 311, 361
NlaIV	GGNNCC	5 cut(s)	15, 80, 153, 154, 435
NmeAIII	GCCGAG	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 288
PkrI	GCNGC	7 cut(s)	26, 46, 74, 120, 147, 212, 297
PleI	GAGTC	2 cut(s)	44, 431
PpsI	GAGTC	2 cut(s)	44, 431
Ppu21I	YACGTR	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	88
PspFI	CCCAGC	1 cut(s)	148
PspN4I	GGNNCC	5 cut(s)	15, 80, 153, 154, 435
PspOMI	GGGCCC	1 cut(s)	151
PspPI	GGNCC	4 cut(s)	26, 88, 151, 152
PspPPI	RGGWCCY	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	87
PsuI	RGATCY	4 cut(s)	13, 187, 216, 433
RsaI	GTAC	2 cut(s)	5, 182
RsaNI	GTAC	2 cut(s)	4, 181
RseI	CAYNNNNRTG	1 cut(s)	306
SatI	GCNGC	7 cut(s)	25, 45, 73, 119, 146, 211, 296
Sau3AI	GATC	6 cut(s)	13, 36, 187, 216, 270, 433
Sau96I	GGNCC	4 cut(s)	26, 88, 151, 152
SbfI	CCTGCAGG	1 cut(s)	87
SchI	GAGTC	2 cut(s)	44, 432
ScrFI	CCNGG	1 cut(s)	160
SdaI	CCTGCAGG	1 cut(s)	87
SduI	GDGCHC	2 cut(s)	155, 405
SetI	ASST	5 cut(s)	84, 93, 123, 143, 186
SfaNI	GCATC	2 cut(s)	185, 485
SfcI	CTRYAG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse8387I	CCTGCAGG	1 cut(s)	87
SsiI	CCGC	7 cut(s)	24, 29, 44, 70, 211, 296, 399
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	2 cut(s)	232, 292
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	93, 123
TauI	GCSGC	4 cut(s)	27, 47, 213, 298
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	3 cut(s)	72, 118, 145
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	477
VpaK11BI	GGWCC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.