Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002638

Physical Location & Seq

Genomic Coordinates Forward (+)

20269786 .. 20271863

Gene Structure 2078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00233940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTACGACGAGAGATCCATGGGGCGCCCGCCGGAGATCAACACGGCGGACTCGGCCACCGACGAAGACCGCGGCCGGAACTGCGGGACCTCGACTAGGAGGTGCTTGTCGTCTTGGCCGCTCGACGAGACGCGGCGAGCCGGGCCGGGCCCCACCGGGAGCGAGAAGAAGAAGAAGTACGTGGATGCGGGATGCGTCATCGTCGGCCGCAAGATCTTTATGCGGACGGTAGGGACGCTTCTCGTCTCCGGCTTGCTCGCCGGACCGATCGTCCTCATCGTCGAAGACCGTACCGCGAATGCAGTAATGCAGTATTGCAGATTATGCAGTAATGCAGTAATGCAGGAATGCAGTATTGCAGATTATGCAGATAATGCAGTAATGCAGGAATGCAGTATTGCAGATTATGCAAATAATGCAAAAATGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008152 GO:0008810 GO:0009058 GO:0009059 GO:0009250 GO:0009504 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9 Mlo

Protein Analysis

143

Amino Acids

15.62

Weight (kDa)

6.28

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24260 AT4G24260 AT4G24260 AT5G49720
fragaria_vesca	FvH4_5g27130 FvH4_5g27130 FvH4_5g27130 FvH4_5g27130
malus_domestica	MD04G1170800.v1.1 MD08G1250900.v1.1 MD15G1445800.v1.1
prunus_persica	Prupe.1G587900_v2.0.a1 Prupe.3G082700_v2.0.a1
pyrus_communis	pycom04g15140 pycom08g21760 pycom15g39260 pycom15g39270
rosa_chinensis	RchiOBHm_Chr7g0218131
rosa_laevigata	RLG00000002397 RLG00000003204 RLG00000029460
rosa_multiflora	Rmu_sc0000054.1_g000022 Rmu_sc0003627.1_g000012 Rmu_sc0031732.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233940 Rroxscaffold_3G00241280
rosa_rugosa	Rorug01G0072800 Rorug02G0384500 Rorug04G0442400 Rorug07G0174400
rosa_samantha	Rh4CG311700 Rh4DG293000 Rh6BG152200 Rh6DG136400 Rh7AG316800 Rh7BG307900 Rh7BG308000 Rh7CG333700 Rh7DG315700
rosa_wichuraiana	Rw7G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	24
AccBSI	CCGCTC	1 cut(s)	121
AccII	CGCG	3 cut(s)	72, 133, 296
AclWI	GGATC	1 cut(s)	9
AcoI	YGGCCR	4 cut(s)	54, 73, 116, 205
AcyI	GRCGYC	1 cut(s)	25
AfaI	GTAC	3 cut(s)	5, 179, 292
AfiI	CCNNNNNNNGG	1 cut(s)	96
AhdI	GACNNNNNGTC	1 cut(s)	269
Alw26I	GTCTC	2 cut(s)	122, 250
AlwI	GGATC	1 cut(s)	9
AoxI	GGCC	6 cut(s)	54, 73, 116, 143, 148, 205
ApaI	GGGCCC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	5 cut(s)	87, 143, 148, 149, 263
AsuC2I	CCSGG	3 cut(s)	142, 147, 157
AvaII	GGWCC	2 cut(s)	87, 263
BaeGI	GKGCMC	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	152
BarI	GAAGNNNNNNTAC	4 cut(s)	161, 193, 222, 254
BbsI	GAAGAC	2 cut(s)	72, 291
BceAI	ACGGC	1 cut(s)	60
BcnI	CCSGG	3 cut(s)	142, 147, 157
BcoDI	GTCTC	2 cut(s)	122, 250
BfaI	CTAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	28
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	4 cut(s)	73, 119, 134, 208
BlsI	GCNGC	4 cut(s)	74, 120, 135, 209
Bme1390I	CCNGG	3 cut(s)	142, 147, 157
Bme18I	GGWCC	2 cut(s)	87, 263
BmeRI	GACNNNNNGTC	1 cut(s)	269
BmgT120I	GGNCC	5 cut(s)	87, 143, 148, 149, 263
BmiI	GGNNCC	4 cut(s)	26, 88, 150, 151
BmrFI	CCNGG	3 cut(s)	142, 147, 157
BmsI	GCATC	2 cut(s)	175, 182
BpiI	GAAGAC	2 cut(s)	72, 291
BpuMI	CCSGG	3 cut(s)	142, 147, 157
BsaAI	YACGTR	1 cut(s)	181
BsaHI	GRCGYC	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	18, 70
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
BseDI	CCNNGG	2 cut(s)	18, 70
BseGI	GGATG	2 cut(s)	190, 197
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	152
BseX3I	CGGCCG	2 cut(s)	73, 205
Bsh1236I	CGCG	3 cut(s)	72, 133, 296
Bsh1285I	CGRYCG	3 cut(s)	76, 208, 270
BshFI	GGCC	6 cut(s)	56, 75, 118, 145, 150, 207
BshNI	GGYRCC	1 cut(s)	24
BsiEI	CGRYCG	3 cut(s)	76, 208, 270
BsiSI	CCGG	7 cut(s)	32, 76, 141, 146, 156, 249, 261
BslFI	GGGAC	2 cut(s)	100, 247
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	2 cut(s)	122, 250
BsmBI	CGTCTC	2 cut(s)	122, 250
BsmFI	GGGAC	2 cut(s)	100, 247
BsmI	GAATGC	3 cut(s)	304, 353, 395
BsnI	GGCC	6 cut(s)	56, 75, 118, 145, 150, 207
Bsp120I	GGGCCC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	4 cut(s)	14, 36, 213, 267
Bsp19I	CCATGG	1 cut(s)	18
BspANI	GGCC	6 cut(s)	56, 75, 118, 145, 150, 207
BspFNI	CGCG	3 cut(s)	72, 133, 296
BspLI	GGNNCC	4 cut(s)	26, 88, 150, 151
BspPI	GGATC	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	24
BsrBI	CCGCTC	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	18, 70
BssMI	GATC	4 cut(s)	14, 36, 213, 267
BssNI	GRCGYC	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	229, 290
BstACI	GRCGYC	1 cut(s)	25
BstAPI	GCANNNNNTGC	5 cut(s)	324, 365, 374, 407, 416
BstBAI	YACGTR	1 cut(s)	181
BstC8I	GCNNGC	4 cut(s)	29, 138, 254, 258
BstDSI	CCRYGG	2 cut(s)	18, 70
BstENI	CCTNNNNNAGG	1 cut(s)	94
BstF5I	GGATG	2 cut(s)	190, 197
BstFNI	CGCG	3 cut(s)	72, 133, 296
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	4 cut(s)	17, 39, 216, 270
BstMAI	GTCTC	2 cut(s)	122, 250
BstMBI	GATC	4 cut(s)	14, 36, 213, 267
BstMCI	CGRYCG	3 cut(s)	76, 208, 270
BstMWI	GCNNNNNNNGC	8 cut(s)	53, 81, 142, 324, 365, 374, 407, 416
BstSCI	CCNGG	3 cut(s)	140, 145, 155
BstSLI	GKGCMC	1 cut(s)	152
BstUI	CGCG	3 cut(s)	72, 133, 296
BstV2I	GAAGAC	2 cut(s)	72, 291
BstX2I	RGATCY	2 cut(s)	14, 213
BstYI	RGATCY	2 cut(s)	14, 213
BstZI	CGGCCG	2 cut(s)	73, 205
BsuRI	GGCC	6 cut(s)	56, 75, 118, 145, 150, 207
BtgI	CCRYGG	2 cut(s)	18, 70
BtsCI	GGATG	2 cut(s)	190, 197
Cac8I	GCNNGC	4 cut(s)	29, 138, 254, 258
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	5 cut(s)	87, 143, 148, 149, 263
Cfr42I	CCGCGG	1 cut(s)	73
CpoI	CGGWCCG	1 cut(s)	263
CseI	GACGC	3 cut(s)	139, 184, 244
Csp6I	GTAC	3 cut(s)	4, 178, 291
CspI	CGGWCCG	1 cut(s)	263
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	8 cut(s)	56, 75, 118, 140, 145, 150, 207, 252
CviKI_1	RGCY	8 cut(s)	56, 75, 118, 140, 145, 150, 207, 252
CviQI	GTAC	3 cut(s)	4, 178, 291
DinI	GGCGCC	1 cut(s)	26
DpnI	GATC	4 cut(s)	16, 38, 215, 269
DpnII	GATC	4 cut(s)	14, 36, 213, 267
DriI	GACNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	4 cut(s)	54, 73, 116, 205
EagI	CGGCCG	2 cut(s)	73, 205
Eam1105I	GACNNNNNGTC	1 cut(s)	269
EciI	GGCGGA	1 cut(s)	62
EclXI	CGGCCG	2 cut(s)	73, 205
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	152
Eco47I	GGWCC	2 cut(s)	87, 263
Eco52I	CGGCCG	2 cut(s)	73, 205
EcoNI	CCTNNNNNAGG	1 cut(s)	94
EcoO109I	RGGNCCY	2 cut(s)	87, 149
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	152
EgeI	GGCGCC	1 cut(s)	26
EheI	GGCGCC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	18
Esp3I	CGTCTC	2 cut(s)	122, 250
FaeI	CATG	1 cut(s)	22
FaiI	YATR	5 cut(s)	20, 221, 325, 366, 408
FaqI	GGGAC	2 cut(s)	100, 247
FatI	CATG	1 cut(s)	18
FauI	CCCGC	3 cut(s)	36, 77, 181
Fnu4HI	GCNGC	4 cut(s)	73, 119, 134, 208
FokI	GGATG	2 cut(s)	197, 204
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	4 cut(s)	73, 119, 134, 208
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	4 cut(s)	73, 119, 134, 208
HaeII	RGCGCY	1 cut(s)	28
HaeIII	GGCC	6 cut(s)	56, 75, 118, 145, 150, 207
HapII	CCGG	7 cut(s)	32, 76, 141, 146, 156, 249, 261
HgaI	GACGC	3 cut(s)	139, 184, 244
HhaI	GCGC	1 cut(s)	27
Hin1I	GRCGYC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	7 cut(s)	32, 76, 141, 146, 156, 249, 261
Hpy99I	CGWCG	5 cut(s)	11, 65, 128, 206, 284
HpyCH4III	ACNGT	2 cut(s)	229, 290
HpyCH4IV	ACGT	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	8 cut(s)	53, 81, 142, 324, 365, 374, 407, 416
HpySE526I	ACGT	1 cut(s)	180
Hsp92I	GRCGYC	1 cut(s)	25
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	25
KasI	GGCGCC	1 cut(s)	24
KspI	CCGCGG	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	14, 36, 213, 267
LmnI	GCTCC	1 cut(s)	159
LpnPI	CCDG	9 cut(s)	45, 89, 154, 159, 169, 262, 274, 329, 371
LweI	GCATC	2 cut(s)	175, 182
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	180
MalI	GATC	4 cut(s)	16, 38, 215, 269
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	4 cut(s)	14, 36, 213, 267
MboII	GAAGA	5 cut(s)	77, 178, 181, 184, 296
MflI	RGATCY	2 cut(s)	14, 213
MhlI	GDGCHC	1 cut(s)	152
Mly113I	GGCGCC	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	3 cut(s)	93, 100, 284
MspA1I	CMGCKG	1 cut(s)	72
MspI	CCGG	7 cut(s)	32, 76, 141, 146, 156, 249, 261
MspR9I	CCNGG	3 cut(s)	142, 147, 157
Mva1269I	GAATGC	3 cut(s)	304, 353, 395
MvnI	CGCG	3 cut(s)	72, 133, 296
MwoI	GCNNNNNNNGC	8 cut(s)	53, 81, 142, 324, 365, 374, 407, 416
NarI	GGCGCC	1 cut(s)	25
NciI	CCSGG	3 cut(s)	142, 147, 157
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	4 cut(s)	14, 36, 213, 267
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	4 cut(s)	26, 88, 150, 151
NmeAIII	GCCGAG	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PctI	GAATGC	3 cut(s)	304, 353, 395
PkrI	GCNGC	4 cut(s)	74, 120, 135, 209
Ple19I	CGATCG	1 cut(s)	270
PleI	GAGTC	1 cut(s)	44
PluTI	GGCGCC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	44
Ppu21I	YACGTR	1 cut(s)	181
PpuMI	RGGWCCY	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	87
PspN4I	GGNNCC	4 cut(s)	26, 88, 150, 151
PspOMI	GGGCCC	1 cut(s)	148
PspPI	GGNCC	5 cut(s)	87, 143, 148, 149, 263
PspPPI	RGGWCCY	1 cut(s)	87
PsuI	RGATCY	2 cut(s)	14, 213
PvuI	CGATCG	1 cut(s)	270
RsaI	GTAC	3 cut(s)	5, 179, 292
RsaNI	GTAC	3 cut(s)	4, 178, 291
Rsr2I	CGGWCCG	1 cut(s)	263
RsrII	CGGWCCG	1 cut(s)	263
SacII	CCGCGG	1 cut(s)	73
SatI	GCNGC	4 cut(s)	73, 119, 134, 208
Sau3AI	GATC	4 cut(s)	14, 36, 213, 267
Sau96I	GGNCC	5 cut(s)	87, 143, 148, 149, 263
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	3 cut(s)	142, 147, 157
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	3 cut(s)	92, 104, 183
SfaNI	GCATC	2 cut(s)	175, 182
SfoI	GGCGCC	1 cut(s)	26
Sfr303I	CCGCGG	1 cut(s)	73
SgrBI	CCGCGG	1 cut(s)	73
SinI	GGWCC	2 cut(s)	87, 263
SspDI	GGCGCC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	3 cut(s)	140, 145, 155
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	229, 290
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	3 cut(s)	92, 123, 282
TaqII	GACCGA	1 cut(s)	280
TauI	GCSGC	4 cut(s)	75, 121, 136, 210
VpaK11BI	GGWCC	2 cut(s)	87, 263
XagI	CCTNNNNNAGG	1 cut(s)	94
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.