Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002638

Physical Location & Seq

Genomic Coordinates Reverse (-)

59876597 .. 59878137

Gene Structure 1541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0442400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGGGTTGCAGATGAAGCTGACTTTCTTCGAATAAGGGAGGTACTAAAACAACGCATTCGAAAAGAGAGCAGGAAGGCGTTGGACTCTGCTGATGACTGCTCGGTTGAGAAGAAGAAAACACCCAAGCACAGACCCTTCTTTGGCCCCTCAGAACATCGTATTGCTCAAAGATTGATTGACGGAAGGGATGCATTAATTCAAGAGCTCAAGATTAGTTCACAGGATGTGAGGAAGGTAGAGATCCCTGCCACAACCACAGCATCAGAGTCGTCTGAATCAGAGTCCGAGTCGGGTTTGACAAAGGCTGCAAAACTCAGCGAGTCTCGGGATTACTCTTTTTTGTCATCAGATGATGCCGATGTTCCAAAAGATTCAAAAGAAGATGCTGGAGTTAGTAAAGATATATTTGTTTCGGAATCAAGTGATGATGAAAAAACTCCGGCTGCTGTACAAGGAGCTTCTACGAATTTGAAGTCTGATAAGCTGGGAAGACTTCCTCTGAAAACAATGTCAAGATCTCAGAAACCCTCCCTAGCAAAGAAAAGTCATGTGCCAAGTAATACACTCAAGAAAGCAAAATCGCTGGCGGATAACCTTCAATCTACTCTGGAAAGCAAACCCTCATCGGAAAAGTCACAATCTGAAACAAAGCGAAGATTGATAAAAACAGGTGAAAAGGTTAATGATAAGGATTCGGACGAGGAAGAGGATGAAGACAATGTTGACGTTTCTTCTATCATCCAAGGACTGTTTAGAGGTAATCGTAAGAGGCCCTCAACTTTGGATTATGACGATAGAGATGATCGTGCAATGGTGTCCAGCTTTGCTGATATTGAGAGAGAAGAAAGGAGAAGCGCAAAACTTGCAAGGCAGGAAGATGAAATAGAGGCTCTAAGAATTGAACAAGAAGAAAAGAAGGAAAGGTTAAGAAGAGCAAAGAAGCAGAAGATGCTGCATAAATCCACAACTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008152 GO:0008810 GO:0009058 GO:0009059 GO:0009250 GO:0009504 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9 Mlo

Protein Analysis

325

Amino Acids

36.58

Weight (kDa)

6.96

Isoelectric Point (pI)

64.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPT2	PF08243	212 - 312	2.2e-14	SPT2 chromatin protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24260 AT4G24260 AT4G24260 AT5G49720
fragaria_vesca	FvH4_5g27130 FvH4_5g27130 FvH4_5g27130 FvH4_5g27130
malus_domestica	MD04G1170800.v1.1 MD08G1250900.v1.1 MD15G1445800.v1.1
prunus_persica	Prupe.1G587900_v2.0.a1 Prupe.3G082700_v2.0.a1
pyrus_communis	pycom04g15140 pycom08g21760 pycom15g39260 pycom15g39270
rosa_chinensis	RchiOBHm_Chr7g0218131
rosa_laevigata	RLG00000002397 RLG00000003204 RLG00000029460
rosa_multiflora	Rmu_sc0000054.1_g000022 Rmu_sc0003627.1_g000012 Rmu_sc0031732.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233940 Rroxscaffold_3G00241280
rosa_rugosa	Rorug01G0072800 Rorug02G0384500 Rorug04G0442400 Rorug07G0174400
rosa_samantha	Rh4CG311700 Rh4DG293000 Rh6BG152200 Rh6DG136400 Rh7AG316800 Rh7BG307900 Rh7BG308000 Rh7CG333700 Rh7DG315700
rosa_wichuraiana	Rw7G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	590
AclWI	GGATC	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	469
AfaI	GTAC	2 cut(s)	45, 453
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	5 cut(s)	203, 378, 475, 602, 905
AluBI	AGCT	5 cut(s)	20, 208, 461, 487, 825
AluI	AGCT	5 cut(s)	20, 208, 461, 487, 825
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	2 cut(s)	145, 773
ApeKI	GCWGC	3 cut(s)	308, 446, 955
ApoI	RAATTY	1 cut(s)	469
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
AseI	ATTAAT	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	860
AspS9I	GGNCC	2 cut(s)	146, 774
AsuHPI	GGTGA	1 cut(s)	686
AsuII	TTCGAA	2 cut(s)	31, 61
AvaI	CYCGRG	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	210
BbsI	GAAGAC	2 cut(s)	499, 723
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	295, 433, 942
BcgI	CGANNNNNNTGC	2 cut(s)	252, 286
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	1 cut(s)	536
BglII	AGATCT	1 cut(s)	518
BisI	GCNGC	3 cut(s)	309, 447, 956
BlsI	GCNGC	3 cut(s)	310, 448, 957
BmeT110I	CYCGRG	1 cut(s)	327
BmgT120I	GGNCC	2 cut(s)	146, 774
BmiI	GGNNCC	1 cut(s)	148
BmsI	GCATC	5 cut(s)	181, 272, 346, 376, 942
BpiI	GAAGAC	2 cut(s)	499, 723
BpmI	CTGGAG	1 cut(s)	411
Bpu14I	TTCGAA	2 cut(s)	31, 61
BpuEI	CTTGAG	2 cut(s)	194, 554
BsaJI	CCNNGG	1 cut(s)	745
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse3DI	GCAATG	1 cut(s)	819
BseDI	CCNNGG	1 cut(s)	745
BseGI	GGATG	4 cut(s)	196, 232, 718, 741
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	4 cut(s)	165, 331, 536, 963
BseXI	GCAGC	3 cut(s)	295, 433, 942
BseYI	CCCAGC	1 cut(s)	487
BshFI	GGCC	2 cut(s)	147, 775
BsiHKAI	GWGCWC	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	443
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	147, 775
BsoBI	CYCGRG	1 cut(s)	327
Bsp119I	TTCGAA	2 cut(s)	31, 61
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp1407I	TGTACA	1 cut(s)	451
Bsp143I	GATC	3 cut(s)	243, 518, 805
BspACI	CCGC	1 cut(s)	590
BspANI	GGCC	2 cut(s)	147, 775
BspCNI	CTCAG	4 cut(s)	164, 330, 535, 964
BspLI	GGNNCC	1 cut(s)	148
BspPI	GGATC	1 cut(s)	238
BspQI	GCTCTTC	1 cut(s)	928
BspT104I	TTCGAA	2 cut(s)	31, 61
BsrDI	GCAATG	1 cut(s)	819
BsrGI	TGTACA	1 cut(s)	451
BssECI	CCNNGG	1 cut(s)	745
BssMI	GATC	3 cut(s)	243, 518, 805
BssT1I	CCWWGG	1 cut(s)	745
Bst4CI	ACNGT	1 cut(s)	753
Bst6I	CTCTTC	2 cut(s)	702, 928
BstAPI	GCANNNNNTGC	2 cut(s)	866, 952
BstAUI	TGTACA	1 cut(s)	451
BstBI	TTCGAA	2 cut(s)	31, 61
BstC8I	GCNNGC	1 cut(s)	588
BstDEI	CTNAG	5 cut(s)	151, 317, 522, 896, 972
BstF5I	GGATG	4 cut(s)	196, 232, 718, 741
BstHHI	GCGC	1 cut(s)	860
BstKTI	GATC	3 cut(s)	246, 521, 808
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	3 cut(s)	243, 518, 805
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 866, 952
BstV1I	GCAGC	3 cut(s)	295, 433, 942
BstV2I	GAAGAC	2 cut(s)	499, 723
BstX2I	RGATCY	2 cut(s)	243, 518
BstYI	RGATCY	2 cut(s)	243, 518
BsuRI	GGCC	2 cut(s)	147, 775
BtsCI	GGATG	4 cut(s)	196, 232, 718, 741
Cac8I	GCNNGC	1 cut(s)	588
CfoI	GCGC	1 cut(s)	860
Cfr13I	GGNCC	2 cut(s)	146, 774
Csp6I	GTAC	2 cut(s)	44, 452
CviAII	CATG	1 cut(s)	551
CviQI	GTAC	2 cut(s)	44, 452
DdeI	CTNAG	5 cut(s)	151, 317, 522, 896, 972
DpnI	GATC	3 cut(s)	245, 520, 807
DpnII	GATC	3 cut(s)	243, 518, 805
Eam1104I	CTCTTC	2 cut(s)	702, 928
EarI	CTCTTC	2 cut(s)	702, 928
EciI	GGCGGA	1 cut(s)	605
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	745
Eco24I	GRGCYC	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	774
EcoT14I	CCWWGG	1 cut(s)	745
EcoT22I	ATGCAT	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	745
FaeI	CATG	1 cut(s)	554
FaiI	YATR	4 cut(s)	407, 552, 792, 960
FatI	CATG	1 cut(s)	550
Fnu4HI	GCNGC	3 cut(s)	309, 447, 956
FokI	GGATG	4 cut(s)	203, 239, 725, 728
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	3 cut(s)	309, 447, 956
FspBI	CTAG	1 cut(s)	536
GlaI	GCGC	1 cut(s)	859
GluI	GCNGC	3 cut(s)	309, 447, 956
GsaI	CCCAGC	1 cut(s)	491
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	2 cut(s)	147, 775
HapII	CCGG	1 cut(s)	443
HhaI	GCGC	1 cut(s)	860
Hin1II	CATG	1 cut(s)	554
Hin6I	GCGC	1 cut(s)	858
HinP1I	GCGC	1 cut(s)	858
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	9 cut(s)	86, 269, 278, 284, 290, 323, 374, 419, 695
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	2 cut(s)	221, 727
Hpy188III	TCNNGA	6 cut(s)	203, 211, 329, 516, 571, 611
Hpy8I	GTNNAC	2 cut(s)	221, 727
HpyAV	CCTTC	6 cut(s)	70, 148, 180, 229, 608, 913
HpyCH4III	ACNGT	1 cut(s)	753
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	6 cut(s)	11, 194, 311, 812, 869, 958
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 866, 952
HpyF3I	CTNAG	5 cut(s)	151, 317, 522, 896, 972
HpySE526I	ACGT	1 cut(s)	729
Hsp92II	CATG	1 cut(s)	554
HspAI	GCGC	1 cut(s)	858
Kzo9I	GATC	3 cut(s)	243, 518, 805
LguI	GCTCTTC	1 cut(s)	928
LmnI	GCTCC	1 cut(s)	458
Lsp1109I	GCAGC	3 cut(s)	295, 433, 942
LweI	GCATC	5 cut(s)	181, 272, 346, 376, 942
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	1 cut(s)	636
MalI	GATC	3 cut(s)	245, 520, 807
MboI	GATC	3 cut(s)	243, 518, 805
MflI	RGATCY	2 cut(s)	243, 518
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	3 cut(s)	198, 469, 900
MlyI	GAGTC	5 cut(s)	80, 278, 293, 299, 332
MmeI	TCCRAC	1 cut(s)	63
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	3 cut(s)	197, 684, 929
MspI	CCGG	1 cut(s)	443
Mva1269I	GAATGC	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	17, 866, 952
NdeII	GATC	3 cut(s)	243, 518, 805
NlaIII	CATG	1 cut(s)	554
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	636
NsiI	ATGCAT	1 cut(s)	196
NspV	TTCGAA	2 cut(s)	31, 61
PciSI	GCTCTTC	1 cut(s)	928
PctI	GAATGC	1 cut(s)	57
PfeI	GAWTC	4 cut(s)	278, 374, 419, 695
PkrI	GCNGC	3 cut(s)	310, 448, 957
PleI	GAGTC	5 cut(s)	80, 277, 292, 298, 331
PpsI	GAGTC	5 cut(s)	80, 277, 292, 298, 331
PshBI	ATTAAT	1 cut(s)	197
Psp124BI	GAGCTC	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	146, 774
PsuI	RGATCY	2 cut(s)	243, 518
RsaI	GTAC	2 cut(s)	45, 453
RsaNI	GTAC	2 cut(s)	44, 452
SacI	GAGCTC	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	928
SaqAI	TTAA	3 cut(s)	197, 684, 929
SatI	GCNGC	3 cut(s)	309, 447, 956
Sau3AI	GATC	3 cut(s)	243, 518, 805
Sau96I	GGNCC	2 cut(s)	146, 774
SchI	GAGTC	5 cut(s)	80, 278, 293, 299, 332
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	5 cut(s)	181, 272, 346, 376, 942
SfuI	TTCGAA	2 cut(s)	31, 61
SmlI	CTYRAG	2 cut(s)	209, 569
SmoI	CTYRAG	2 cut(s)	209, 569
Sse9I	AATT	3 cut(s)	198, 469, 900
SsiI	CCGC	1 cut(s)	590
SspMI	CTAG	1 cut(s)	536
SstI	GAGCTC	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	745
TaaI	ACNGT	1 cut(s)	753
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	2 cut(s)	31, 61
TasI	AATT	3 cut(s)	198, 469, 900
TatI	WGTACW	1 cut(s)	451
TfiI	GAWTC	4 cut(s)	278, 374, 419, 695
Tru1I	TTAA	3 cut(s)	197, 684, 929
Tru9I	TTAA	3 cut(s)	197, 684, 929
TseFI	GTSAC	1 cut(s)	636
TseI	GCWGC	3 cut(s)	308, 446, 955
Tsp45I	GTSAC	1 cut(s)	636
TspDTI	ATGAA	4 cut(s)	30, 447, 729, 897
TspGWI	ACGGA	1 cut(s)	198
VspI	ATTAAT	1 cut(s)	197
XapI	RAATTY	1 cut(s)	469
XspI	CTAG	1 cut(s)	536
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.