Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002638

Physical Location & Seq

Genomic Coordinates Forward (+)

39152218 .. 39153715

Gene Structure 1498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g39270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCCGCCGCTCTAGCTGCTTCGTCCATAGTTTTCAAAGATAACAAGGCATACTCTCAGAAACTTGTTCATGGTGCAAAAACACTCTTCAGGTTTTCAAGGGAACAGAGAGGCAGATATAGTGCTGGTGGTAGCACGGATGCGGCAACCTTCTACAATTCCACCAGTTATTGGGATGAGTTCATATGGGGTGGAGCTTGGATGTATTATGCTACTGGAAATTCCTCTTATCTTCAGCTTGCAACAACTCCGGGTCTTGCTAAACATGCTGGTGCCTTCTGGGGAGGACCTGATTATGGAGTATTGAGCTGGGACAACAAGCTTGCTGGGGCTCAGGTGCTTCTGAGCCGTTTGAGGTTATTCTTGAGCCCTGGGTATCCGTATGAAGAAATTTTGAGGACATTTCACAACCAGACTAGCATAATCATGTGCTCATACCTGCCTGTTTTTACAACCTTCAACAGAACCAAAGGAGGCTTGATCCAGTTGAATCATGGAAGGCCACAACCTCTTCAGTATGTAGTCAATGCAGCCTTCTTAGCTACATTGTATAGTGAGTATCTTGATGCTGCTGATACACCTGGGTGGTATTGTGGACCCAACTTCTACTCTACTGACGTGTTGCGAGAATTTGCTAAAACTCAGATTGATTACATCCTTGGCAAAAATCCTCGAAAAATGAGTTATGTCGTGGGCTTTGGTAATCATTACCCAAAACATGTCCACCATAGAGGCGCATCTATTCCAAAGAACAAAATCAAATACAGTTGTAAAGGAGGATGGAAATGGAGGGACACTCCAAAAGCAAACCCAAACACGATTGATGGGGCCATGGTTGCTGGTCCTGACAAACATGATGGTTTCCGTGATGTTCGTTCTAATTACAACTACACAGAGCCGACTCTTGCAGGAAATGCAGGTTTGGTAGCAGCACTCGTTGCTTTGTCGGGAGAAAAATCTGTTGGAATTGACAAAAATACGATTTTCTCTGCGGTTCCCCCAATGTTCCCCACTCCACCACCACCTCCGGCACCCTGGAAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008152 GO:0008810 GO:0009058 GO:0009059 GO:0009250 GO:0009504 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9 Mlo

Protein Analysis

349

Amino Acids

38.48

Weight (kDa)

9.47

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	1 - 312	6.9e-84	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24260 AT4G24260 AT4G24260 AT5G49720
fragaria_vesca	FvH4_5g27130 FvH4_5g27130 FvH4_5g27130 FvH4_5g27130
malus_domestica	MD04G1170800.v1.1 MD08G1250900.v1.1 MD15G1445800.v1.1
prunus_persica	Prupe.1G587900_v2.0.a1 Prupe.3G082700_v2.0.a1
pyrus_communis	pycom04g15140 pycom08g21760 pycom15g39260 pycom15g39270
rosa_chinensis	RchiOBHm_Chr7g0218131
rosa_laevigata	RLG00000002397 RLG00000003204 RLG00000029460
rosa_multiflora	Rmu_sc0000054.1_g000022 Rmu_sc0003627.1_g000012 Rmu_sc0031732.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233940 Rroxscaffold_3G00241280
rosa_rugosa	Rorug01G0072800 Rorug02G0384500 Rorug04G0442400 Rorug07G0174400
rosa_samantha	Rh4CG311700 Rh4DG293000 Rh6BG152200 Rh6DG136400 Rh7AG316800 Rh7BG307900 Rh7BG308000 Rh7CG333700 Rh7DG315700
rosa_wichuraiana	Rw7G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	447, 908
AccB1I	GGYRCC	2 cut(s)	272, 1030
AccB7I	CCANNNNNTGG	1 cut(s)	171
AccBSI	CCGCTC	1 cut(s)	11
AciI	CCGC	4 cut(s)	6, 9, 143, 992
AclWI	GGATC	1 cut(s)	475
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	220, 390, 629
AcuI	CTGAAG	3 cut(s)	73, 218, 497
AfiI	CCNNNNNNNGG	2 cut(s)	171, 296
AflIII	ACRYGT	2 cut(s)	618, 718
AgsI	TTSAA	4 cut(s)	37, 99, 460, 490
AjiI	CACGTC	1 cut(s)	619
AjnI	CCWGG	3 cut(s)	370, 580, 1034
AjuI	GAANNNNNNNTTGG	2 cut(s)	945, 977
AleI	CACNNNNGTG	1 cut(s)	583
AluBI	AGCT	6 cut(s)	17, 197, 238, 309, 322, 542
AluI	AGCT	6 cut(s)	17, 197, 238, 309, 322, 542
Alw21I	GWGCWC	1 cut(s)	434
AlwI	GGATC	1 cut(s)	475
AoxI	GGCC	3 cut(s)	3, 500, 828
ApeKI	GCWGC	4 cut(s)	17, 530, 569, 929
ApoI	RAATTY	3 cut(s)	220, 390, 629
AspLEI	GCGC	1 cut(s)	737
AspS9I	GGNCC	4 cut(s)	287, 596, 828, 842
AsuC2I	CCSGG	1 cut(s)	252
AvaII	GGWCC	3 cut(s)	287, 596, 842
BanI	GGYRCC	2 cut(s)	272, 1030
BanII	GRGCYC	2 cut(s)	334, 371
Bbv12I	GWGCWC	1 cut(s)	434
BbvI	GCAGC	4 cut(s)	4, 542, 556, 941
BccI	CCATC	3 cut(s)	774, 818, 851
BceAI	ACGGC	1 cut(s)	333
BciT130I	CCWGG	3 cut(s)	372, 582, 1036
BciVI	GTATCC	1 cut(s)	387
BcnI	CCSGG	1 cut(s)	252
BfaI	CTAG	2 cut(s)	14, 417
BfuAI	ACCTGC	2 cut(s)	447, 908
BfuI	GTATCC	1 cut(s)	387
BisI	GCNGC	7 cut(s)	6, 9, 18, 144, 531, 570, 930
BlsI	GCNGC	7 cut(s)	7, 10, 19, 145, 532, 571, 931
Bme1390I	CCNGG	4 cut(s)	252, 372, 582, 1036
Bme18I	GGWCC	3 cut(s)	287, 596, 842
BmgBI	CACGTC	1 cut(s)	619
BmgT120I	GGNCC	4 cut(s)	287, 596, 828, 842
BmiI	GGNNCC	5 cut(s)	274, 598, 829, 996, 1032
BmrFI	CCNGG	4 cut(s)	252, 372, 582, 1036
BmsI	GCATC	3 cut(s)	130, 556, 746
BplI	GAGNNNNNCTC	2 cut(s)	781, 813
Bpu10I	CCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	385
BpuMI	CCSGG	1 cut(s)	252
BsaJI	CCNNGG	6 cut(s)	370, 371, 581, 658, 831, 1034
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 296
Bse1I	ACTGG	3 cut(s)	165, 220, 484
BseBI	CCWGG	3 cut(s)	372, 582, 1036
BseDI	CCNNGG	6 cut(s)	370, 371, 581, 658, 831, 1034
BseGI	GGATG	5 cut(s)	145, 181, 207, 654, 785
BseLI	CCNNNNNNNGG	2 cut(s)	171, 296
BseMII	CTCAG	4 cut(s)	71, 335, 347, 656
BseNI	ACTGG	3 cut(s)	165, 220, 484
BseXI	GCAGC	4 cut(s)	4, 542, 556, 941
BseYI	CCCAGC	2 cut(s)	309, 326
BshFI	GGCC	3 cut(s)	5, 502, 830
BshNI	GGYRCC	2 cut(s)	272, 1030
BsiHKAI	GWGCWC	1 cut(s)	434
BsiSI	CCGG	2 cut(s)	251, 1028
BslFI	GGGAC	2 cut(s)	326, 806
BslI	CCNNNNNNNGG	2 cut(s)	171, 296
BsmFI	GGGAC	2 cut(s)	326, 806
BsnI	GGCC	3 cut(s)	5, 502, 830
Bsp1286I	GDGCHC	3 cut(s)	334, 371, 434
Bsp143I	GATC	1 cut(s)	480
Bsp19I	CCATGG	1 cut(s)	831
BspACI	CCGC	4 cut(s)	6, 9, 143, 992
BspANI	GGCC	3 cut(s)	5, 502, 830
BspCNI	CTCAG	4 cut(s)	70, 336, 346, 655
BspLI	GGNNCC	5 cut(s)	274, 598, 829, 996, 1032
BspMI	ACCTGC	2 cut(s)	447, 908
BspPI	GGATC	1 cut(s)	475
BspT107I	GGYRCC	2 cut(s)	272, 1030
BsrBI	CCGCTC	1 cut(s)	11
BsrI	ACTGG	3 cut(s)	165, 220, 484
BssECI	CCNNGG	6 cut(s)	370, 371, 581, 658, 831, 1034
BssMI	GATC	1 cut(s)	480
BssT1I	CCWWGG	2 cut(s)	658, 831
Bst2UI	CCWGG	3 cut(s)	372, 582, 1036
Bst4CI	ACNGT	1 cut(s)	767
Bst6I	CTCTTC	2 cut(s)	92, 516
BstAPI	GCANNNNNTGC	2 cut(s)	914, 938
BstC8I	GCNNGC	2 cut(s)	240, 324
BstDEI	CTNAG	5 cut(s)	57, 333, 344, 538, 642
BstDSI	CCRYGG	1 cut(s)	831
BstF5I	GGATG	5 cut(s)	145, 181, 207, 654, 785
BstHHI	GCGC	1 cut(s)	737
BstKTI	GATC	1 cut(s)	483
BstMBI	GATC	1 cut(s)	480
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 17, 266, 539, 836, 914, 938
BstNI	CCWGG	3 cut(s)	372, 582, 1036
BstNSI	RCATGY	2 cut(s)	269, 722
BstSCI	CCNGG	4 cut(s)	250, 370, 580, 1034
BstV1I	GCAGC	4 cut(s)	4, 542, 556, 941
BsuI	GTATCC	1 cut(s)	387
BsuRI	GGCC	3 cut(s)	5, 502, 830
BtgI	CCRYGG	1 cut(s)	831
BtrI	CACGTC	1 cut(s)	619
BtsCI	GGATG	5 cut(s)	145, 181, 207, 654, 785
BveI	ACCTGC	2 cut(s)	447, 908
Cac8I	GCNNGC	2 cut(s)	240, 324
CfoI	GCGC	1 cut(s)	737
Cfr13I	GGNCC	4 cut(s)	287, 596, 828, 842
CviAII	CATG	8 cut(s)	71, 266, 427, 494, 719, 832, 854, 1044
DdeI	CTNAG	5 cut(s)	57, 333, 344, 538, 642
DpnI	GATC	1 cut(s)	482
DpnII	GATC	1 cut(s)	480
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	92, 516
EarI	CTCTTC	2 cut(s)	92, 516
Eco130I	CCWWGG	2 cut(s)	658, 831
Eco24I	GRGCYC	2 cut(s)	334, 371
Eco47I	GGWCC	3 cut(s)	287, 596, 842
Eco57I	CTGAAG	3 cut(s)	73, 218, 497
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRII	CCWGG	3 cut(s)	370, 580, 1034
EcoT14I	CCWWGG	2 cut(s)	658, 831
EcoT38I	GRGCYC	2 cut(s)	334, 371
ErhI	CCWWGG	2 cut(s)	658, 831
FaeI	CATG	8 cut(s)	74, 269, 430, 497, 722, 835, 857, 1047
FaqI	GGGAC	2 cut(s)	326, 806
FatI	CATG	8 cut(s)	70, 265, 426, 493, 718, 831, 853, 1043
FauNDI	CATATG	1 cut(s)	185
Fnu4HI	GCNGC	7 cut(s)	6, 9, 18, 144, 531, 570, 930
FokI	GGATG	5 cut(s)	152, 188, 214, 641, 792
FriOI	GRGCYC	2 cut(s)	334, 371
Fsp4HI	GCNGC	7 cut(s)	6, 9, 18, 144, 531, 570, 930
FspBI	CTAG	2 cut(s)	14, 417
GlaI	GCGC	1 cut(s)	736
GluI	GCNGC	7 cut(s)	6, 9, 18, 144, 531, 570, 930
GsaI	CCCAGC	2 cut(s)	313, 330
HaeIII	GGCC	3 cut(s)	5, 502, 830
HapII	CCGG	2 cut(s)	251, 1028
HhaI	GCGC	1 cut(s)	737
Hin1II	CATG	8 cut(s)	74, 269, 430, 497, 722, 835, 857, 1047
Hin6I	GCGC	1 cut(s)	735
HinP1I	GCGC	1 cut(s)	735
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	2 cut(s)	490, 901
HpaII	CCGG	2 cut(s)	251, 1028
Hpy166II	GTNNAC	2 cut(s)	596, 724
Hpy188I	TCNGA	3 cut(s)	60, 345, 645
Hpy188III	TCNNGA	4 cut(s)	364, 563, 845, 948
Hpy8I	GTNNAC	2 cut(s)	596, 724
HpyAV	CCTTC	5 cut(s)	160, 286, 466, 492, 544
HpyCH4III	ACNGT	1 cut(s)	767
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	5 cut(s)	77, 242, 530, 908, 917
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 17, 266, 539, 836, 914, 938
HpyF3I	CTNAG	5 cut(s)	57, 333, 344, 538, 642
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	8 cut(s)	74, 269, 430, 497, 722, 835, 857, 1047
HspAI	GCGC	1 cut(s)	735
Kzo9I	GATC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	4 cut(s)	4, 542, 556, 941
LweI	GCATC	3 cut(s)	130, 556, 746
MaeI	CTAG	2 cut(s)	14, 417
MaeII	ACGT	1 cut(s)	618
MalI	GATC	1 cut(s)	482
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	1 cut(s)	480
MboII	GAAGA	4 cut(s)	79, 224, 398, 503
MhlI	GDGCHC	3 cut(s)	334, 371, 434
MluCI	AATT	6 cut(s)	157, 220, 390, 629, 880, 966
MlyI	GAGTC	1 cut(s)	895
MmeI	TCCRAC	1 cut(s)	943
MslI	CAYNNNNRTG	3 cut(s)	270, 425, 583
MspI	CCGG	2 cut(s)	251, 1028
MspR9I	CCNGG	4 cut(s)	252, 372, 582, 1036
MvaI	CCWGG	3 cut(s)	372, 582, 1036
MwoI	GCNNNNNNNGC	7 cut(s)	14, 17, 266, 539, 836, 914, 938
NciI	CCSGG	1 cut(s)	252
NcoI	CCATGG	1 cut(s)	831
NdeI	CATATG	1 cut(s)	185
NdeII	GATC	1 cut(s)	480
NlaIII	CATG	8 cut(s)	74, 269, 430, 497, 722, 835, 857, 1047
NlaIV	GGNNCC	5 cut(s)	274, 598, 829, 996, 1032
NspI	RCATGY	2 cut(s)	269, 722
OliI	CACNNNNGTG	1 cut(s)	583
PasI	CCCWGGG	1 cut(s)	371
PciI	ACATGT	1 cut(s)	718
PfeI	GAWTC	1 cut(s)	490
PflMI	CCANNNNNTGG	1 cut(s)	171
PkrI	GCNGC	7 cut(s)	7, 10, 19, 145, 532, 571, 931
PleI	GAGTC	1 cut(s)	895
PpsI	GAGTC	1 cut(s)	895
PpuMI	RGGWCCY	1 cut(s)	287
PscI	ACATGT	1 cut(s)	718
Psp5II	RGGWCCY	1 cut(s)	287
Psp6I	CCWGG	3 cut(s)	370, 580, 1034
PspFI	CCCAGC	2 cut(s)	309, 326
PspGI	CCWGG	3 cut(s)	370, 580, 1034
PspN4I	GGNNCC	5 cut(s)	274, 598, 829, 996, 1032
PspPI	GGNCC	4 cut(s)	287, 596, 828, 842
PspPPI	RGGWCCY	1 cut(s)	287
RseI	CAYNNNNRTG	3 cut(s)	270, 425, 583
SatI	GCNGC	7 cut(s)	6, 9, 18, 144, 531, 570, 930
Sau3AI	GATC	1 cut(s)	480
Sau96I	GGNCC	4 cut(s)	287, 596, 828, 842
SchI	GAGTC	1 cut(s)	895
ScrFI	CCNGG	4 cut(s)	252, 372, 582, 1036
SduI	GDGCHC	3 cut(s)	334, 371, 434
SfaNI	GCATC	3 cut(s)	130, 556, 746
SinI	GGWCC	3 cut(s)	287, 596, 842
SmiMI	CAYNNNNRTG	3 cut(s)	270, 425, 583
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	6 cut(s)	157, 220, 390, 629, 880, 966
SsiI	CCGC	4 cut(s)	6, 9, 143, 992
SspMI	CTAG	2 cut(s)	14, 417
StyD4I	CCNGG	4 cut(s)	250, 370, 580, 1034
StyI	CCWWGG	2 cut(s)	658, 831
TaaI	ACNGT	1 cut(s)	767
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	1 cut(s)	673
TasI	AATT	6 cut(s)	157, 220, 390, 629, 880, 966
TauI	GCSGC	3 cut(s)	8, 11, 146
TfiI	GAWTC	1 cut(s)	490
TseI	GCWGC	4 cut(s)	17, 530, 569, 929
TspDTI	ATGAA	3 cut(s)	59, 172, 399
TspGWI	ACGGA	3 cut(s)	152, 369, 854
Van91I	CCANNNNNTGG	1 cut(s)	171
VpaK11BI	GGWCC	3 cut(s)	287, 596, 842
XapI	RAATTY	3 cut(s)	220, 390, 629
XceI	RCATGY	2 cut(s)	269, 722
XcmI	CCANNNNNNNNNTGG	1 cut(s)	491
XspI	CTAG	2 cut(s)	14, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.