Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002638

Physical Location & Seq

Genomic Coordinates Reverse (-)

57335627 .. 57336058

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG311700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTACGACAGGGATCCATGGGGCGGCCTGCTGGAGATCAACACGGCAGACTCGGCCACCGAAGACGACCGCAGCCGGAACCTGCAGGACCTCGACCGAGTGGCACTGTCGTCTCGGCCGCTCGACGAGACGCAACAGAGATGGCTGCTGGGCCCCATTGGGGAGCAAAAGAAGAAGAAGTACGTGGATCTGGGATGCATCATCGTCAACCGCAAGATCTTTATCTGGACGGTAGGGACGCTCCTCGTCTCCGACTTGCTCGTCGGACTGATCGTCCTCATCGTCAAGACAGTGCTGCGTCACCACCATGCCAAGCCTCCTCCGGACAACTACACTCTCGCTCTCCACAAGGCTCTCATGTTCTTCAACGCTCAGAAATATCAGTTTATTTTTGAGTCTGGGCTAATTTTTTTTTTGAAAAGTTTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008152 GO:0008810 GO:0009058 GO:0009059 GO:0009250 GO:0009504 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042538 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0051704 GO:0051707 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

143

Amino Acids

16.41

Weight (kDa)

8.71

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24260 AT4G24260 AT4G24260 AT5G49720
fragaria_vesca	FvH4_5g27130 FvH4_5g27130 FvH4_5g27130 FvH4_5g27130
malus_domestica	MD04G1170800.v1.1 MD08G1250900.v1.1 MD15G1445800.v1.1
prunus_persica	Prupe.1G587900_v2.0.a1 Prupe.3G082700_v2.0.a1
pyrus_communis	pycom04g15140 pycom08g21760 pycom15g39260 pycom15g39270
rosa_chinensis	RchiOBHm_Chr7g0218131
rosa_laevigata	RLG00000002397 RLG00000003204 RLG00000029460
rosa_multiflora	Rmu_sc0000054.1_g000022 Rmu_sc0003627.1_g000012 Rmu_sc0031732.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233940 Rroxscaffold_3G00241280
rosa_rugosa	Rorug01G0072800 Rorug02G0384500 Rorug04G0442400 Rorug07G0174400
rosa_samantha	Rh4CG311700 Rh4DG293000 Rh6BG152200 Rh6DG136400 Rh7AG316800 Rh7BG307900 Rh7BG308000 Rh7CG333700 Rh7DG315700
rosa_wichuraiana	Rw7G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	90
AccBSI	CCGCTC	1 cut(s)	121
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	4 cut(s)	24, 70, 119, 211
AclWI	GGATC	3 cut(s)	8, 21, 195
AcoI	YGGCCR	2 cut(s)	54, 116
AfaI	GTAC	2 cut(s)	5, 182
AfiI	CCNNNNNNNGG	2 cut(s)	23, 160
AgsI	TTSAA	2 cut(s)	367, 418
AhdI	GACNNNNNGTC	1 cut(s)	272
Alw26I	GTCTC	3 cut(s)	117, 122, 253
AlwI	GGATC	3 cut(s)	8, 21, 195
Aor13HI	TCCGGA	1 cut(s)	322
AoxI	GGCC	4 cut(s)	25, 54, 116, 151
ApaI	GGGCCC	1 cut(s)	155
ApeKI	GCWGC	3 cut(s)	72, 145, 295
AspS9I	GGNCC	3 cut(s)	88, 151, 152
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	155
BamHI	GGATCC	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	155
BarI	GAAGNNNNNNTAC	2 cut(s)	164, 196
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	84, 132, 282
BccI	CCATC	1 cut(s)	135
BceAI	ACGGC	1 cut(s)	60
BcoDI	GTCTC	3 cut(s)	117, 122, 253
BfmI	CTRYAG	1 cut(s)	83
BfuAI	ACCTGC	1 cut(s)	90
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	5 cut(s)	25, 73, 119, 146, 296
BlsI	GCNGC	5 cut(s)	26, 74, 120, 147, 297
Bme18I	GGWCC	1 cut(s)	88
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmgT120I	GGNCC	3 cut(s)	88, 151, 152
BmiI	GGNNCC	4 cut(s)	15, 80, 153, 154
BmsI	GCATC	2 cut(s)	185, 207
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	17
BsaWI	WCCGGW	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 160
Bse8I	GATNNNNATC	1 cut(s)	221
BseAI	TCCGGA	1 cut(s)	322
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	1 cut(s)	200
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	2 cut(s)	23, 160
BseMII	CTCAG	1 cut(s)	386
BseRI	GAGGAG	2 cut(s)	233, 309
BseSI	GKGCMC	1 cut(s)	155
BseX3I	CGGCCG	1 cut(s)	116
BseXI	GCAGC	3 cut(s)	84, 132, 282
BseYI	CCCAGC	1 cut(s)	148
Bsh1285I	CGRYCG	3 cut(s)	70, 97, 119
BshFI	GGCC	4 cut(s)	27, 56, 118, 153
BsiEI	CGRYCG	3 cut(s)	70, 97, 119
BsiSI	CCGG	2 cut(s)	76, 323
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	23, 160
BsmAI	GTCTC	3 cut(s)	117, 122, 253
BsmBI	CGTCTC	3 cut(s)	117, 122, 253
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	4 cut(s)	27, 56, 118, 153
Bsp120I	GGGCCC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp13I	TCCGGA	1 cut(s)	322
Bsp143I	GATC	5 cut(s)	13, 36, 187, 216, 270
Bsp19I	CCATGG	1 cut(s)	17
BspACI	CCGC	4 cut(s)	24, 70, 119, 211
BspANI	GGCC	4 cut(s)	27, 56, 118, 153
BspCNI	CTCAG	1 cut(s)	385
BspEI	TCCGGA	1 cut(s)	322
BspLI	GGNNCC	4 cut(s)	15, 80, 153, 154
BspMAI	CTGCAG	1 cut(s)	87
BspMI	ACCTGC	1 cut(s)	90
BspPI	GGATC	3 cut(s)	8, 21, 195
BsrBI	CCGCTC	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	5 cut(s)	13, 36, 187, 216, 270
BssT1I	CCWWGG	1 cut(s)	17
Bst4CI	ACNGT	3 cut(s)	108, 232, 292
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	372
BstDSI	CCRYGG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	200
BstKTI	GATC	5 cut(s)	16, 39, 190, 219, 273
BstMAI	GTCTC	3 cut(s)	117, 122, 253
BstMBI	GATC	5 cut(s)	13, 36, 187, 216, 270
BstMCI	CGRYCG	3 cut(s)	70, 97, 119
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	83
BstSLI	GKGCMC	1 cut(s)	155
BstV1I	GCAGC	3 cut(s)	84, 132, 282
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	3 cut(s)	13, 187, 216
BstYI	RGATCY	3 cut(s)	13, 187, 216
BstZI	CGGCCG	1 cut(s)	116
BsuRI	GGCC	4 cut(s)	27, 56, 118, 153
BtgI	CCRYGG	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	2 cut(s)	104, 297
BveI	ACCTGC	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	29
Cfr13I	GGNCC	3 cut(s)	88, 151, 152
CseI	GACGC	3 cut(s)	139, 247, 287
Csp6I	GTAC	2 cut(s)	4, 181
CviAII	CATG	3 cut(s)	18, 308, 358
CviJI	RGCY	9 cut(s)	27, 56, 75, 118, 145, 153, 316, 353, 403
CviKI_1	RGCY	9 cut(s)	27, 56, 75, 118, 145, 153, 316, 353, 403
CviQI	GTAC	2 cut(s)	4, 181
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	5 cut(s)	15, 38, 189, 218, 272
DpnII	GATC	5 cut(s)	13, 36, 187, 216, 270
DrdI	GACNNNNNNGTC	1 cut(s)	260
DriI	GACNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	2 cut(s)	54, 116
EagI	CGGCCG	1 cut(s)	116
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EclXI	CGGCCG	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	88
Eco52I	CGGCCG	1 cut(s)	116
EcoO109I	RGGNCCY	2 cut(s)	88, 152
EcoT14I	CCWWGG	1 cut(s)	17
EcoT22I	ATGCAT	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	17
Esp3I	CGTCTC	3 cut(s)	117, 122, 253
FaeI	CATG	3 cut(s)	21, 311, 361
FaiI	YATR	3 cut(s)	19, 309, 359
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	3 cut(s)	17, 307, 357
Fnu4HI	GCNGC	5 cut(s)	25, 73, 119, 146, 296
FokI	GGATG	1 cut(s)	207
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	5 cut(s)	25, 73, 119, 146, 296
GluI	GCNGC	5 cut(s)	25, 73, 119, 146, 296
GsaI	CCCAGC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	4 cut(s)	27, 56, 118, 153
HapII	CCGG	2 cut(s)	76, 323
HgaI	GACGC	3 cut(s)	139, 247, 287
Hin1II	CATG	3 cut(s)	21, 311, 361
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	2 cut(s)	50, 395
HpaII	CCGG	2 cut(s)	76, 323
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	253, 266, 375
Hpy188III	TCNNGA	3 cut(s)	226, 286, 323
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	2 cut(s)	128, 266
HpyCH4III	ACNGT	3 cut(s)	108, 232, 292
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	2 cut(s)	85, 198
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	21, 311, 361
Kpn2I	TCCGGA	1 cut(s)	322
Kzo9I	GATC	5 cut(s)	13, 36, 187, 216, 270
LmnI	GCTCC	2 cut(s)	163, 246
Lsp1109I	GCAGC	3 cut(s)	84, 132, 282
LweI	GCATC	2 cut(s)	185, 207
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	5 cut(s)	15, 38, 189, 218, 272
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	5 cut(s)	13, 36, 187, 216, 270
MboII	GAAGA	4 cut(s)	74, 184, 187, 355
MflI	RGATCY	3 cut(s)	13, 187, 216
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	1 cut(s)	405
MlyI	GAGTC	2 cut(s)	44, 404
MmeI	TCCRAC	2 cut(s)	244, 276
MnlI	CCTC	5 cut(s)	101, 254, 287, 327, 330
Mph1103I	ATGCAT	1 cut(s)	200
MroI	TCCGGA	1 cut(s)	322
MslI	CAYNNNNRTG	1 cut(s)	306
MspI	CCGG	2 cut(s)	76, 323
MwoI	GCNNNNNNNGC	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	5 cut(s)	13, 36, 187, 216, 270
NlaIII	CATG	3 cut(s)	21, 311, 361
NlaIV	GGNNCC	4 cut(s)	15, 80, 153, 154
NmeAIII	GCCGAG	2 cut(s)	32, 94
NmuCI	GTSAC	1 cut(s)	299
NsiI	ATGCAT	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 279
PkrI	GCNGC	5 cut(s)	26, 74, 120, 147, 297
PleI	GAGTC	2 cut(s)	44, 403
PpsI	GAGTC	2 cut(s)	44, 403
Ppu21I	YACGTR	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	88
PspFI	CCCAGC	1 cut(s)	148
PspN4I	GGNNCC	4 cut(s)	15, 80, 153, 154
PspOMI	GGGCCC	1 cut(s)	151
PspPI	GGNCC	3 cut(s)	88, 151, 152
PspPPI	RGGWCCY	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	87
PsuI	RGATCY	3 cut(s)	13, 187, 216
RsaI	GTAC	2 cut(s)	5, 182
RsaNI	GTAC	2 cut(s)	4, 181
RseI	CAYNNNNRTG	1 cut(s)	306
SatI	GCNGC	5 cut(s)	25, 73, 119, 146, 296
Sau3AI	GATC	5 cut(s)	13, 36, 187, 216, 270
Sau96I	GGNCC	3 cut(s)	88, 151, 152
SbfI	CCTGCAGG	1 cut(s)	87
SchI	GAGTC	2 cut(s)	44, 404
SdaI	CCTGCAGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	3 cut(s)	84, 93, 186
SfaNI	GCATC	2 cut(s)	185, 207
SfcI	CTRYAG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse8387I	CCTGCAGG	1 cut(s)	87
Sse9I	AATT	1 cut(s)	405
SsiI	CCGC	4 cut(s)	24, 70, 119, 211
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	3 cut(s)	108, 232, 292
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	93, 123
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	405
TauI	GCSGC	2 cut(s)	27, 121
TscAI	CASTG	2 cut(s)	111, 297
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	3 cut(s)	72, 145, 295
Tsp45I	GTSAC	1 cut(s)	299
TspRI	CASTG	2 cut(s)	111, 297
VpaK11BI	GGWCC	1 cut(s)	88
Zsp2I	ATGCAT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.