Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002638

Physical Location & Seq

Genomic Coordinates Reverse (-)

24461552 .. 24469912

Gene Structure 8361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG152200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTATGACAGGGATCCATGGGGTGGCCCGCTGGAGATCAACACGGCGGACTCGGCCACCGACGACGACCGCAACCGGAACCTACAGGACCTCGACCAGGCGGCGCTGTCGTCTCGGCCGCTCGACGAGACGCAACAGAGCTGGCTGCTAGGCCCCACCGGGGAGCAGAAGAAGAAGAAGTACGTGGATCTGGGATGCATCATCGTCAACCGCAAGATCTTTATCTGGACGGTAGGGACGCTCCTTGTCTCCGGCTTGCTCGCCGGACTGATCGTCCTCATCGTCAAGACCGTGCCACGTCACCATCATGCCAAGCCTCCTCCGGACAACTACACTCTCGCTCTCCACAAGGCTCTCATGTTCTTCAACGCTCAGAAATCACAACGAAAACATAGACCGATCAATTCCAAATGCAGCCGAAGTTACCCGGGTCGAGATCGTACTGTACGGGTCGGAGTGAGCCGGGAACAAAGTCTCCACAACCACAGCAGCCACGCCCTCCCTAATGTGCTCGTCAGTGACCTCTTCTCCATAGGCGGTAGCCACCGTCAGAGCCTGCTGAAAATCCAGGACTCCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008152 GO:0008810 GO:0009058 GO:0009059 GO:0009250 GO:0009504 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042538 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0051704 GO:0051707 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

193

Amino Acids

21.66

Weight (kDa)

9.58

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24260 AT4G24260 AT4G24260 AT5G49720
fragaria_vesca	FvH4_5g27130 FvH4_5g27130 FvH4_5g27130 FvH4_5g27130
malus_domestica	MD04G1170800.v1.1 MD08G1250900.v1.1 MD15G1445800.v1.1
prunus_persica	Prupe.1G587900_v2.0.a1 Prupe.3G082700_v2.0.a1
pyrus_communis	pycom04g15140 pycom08g21760 pycom15g39260 pycom15g39270
rosa_chinensis	RchiOBHm_Chr7g0218131
rosa_laevigata	RLG00000002397 RLG00000003204 RLG00000029460
rosa_multiflora	Rmu_sc0000054.1_g000022 Rmu_sc0003627.1_g000012 Rmu_sc0031732.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233940 Rroxscaffold_3G00241280
rosa_rugosa	Rorug01G0072800 Rorug02G0384500 Rorug04G0442400 Rorug07G0174400
rosa_samantha	Rh4CG311700 Rh4DG293000 Rh6BG152200 Rh6DG136400 Rh7AG316800 Rh7BG307900 Rh7BG308000 Rh7CG333700 Rh7DG315700
rosa_wichuraiana	Rw7G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	23
AccBSI	CCGCTC	1 cut(s)	121
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	7 cut(s)	29, 47, 70, 101, 119, 211, 537
AclWI	GGATC	3 cut(s)	8, 21, 195
AcoI	YGGCCR	2 cut(s)	54, 116
AfaI	GTAC	3 cut(s)	182, 442, 447
AfiI	CCNNNNNNNGG	3 cut(s)	23, 97, 160
AgsI	TTSAA	1 cut(s)	367
AhdI	GACNNNNNGTC	1 cut(s)	272
AjiI	CACGTC	1 cut(s)	299
AjnI	CCWGG	2 cut(s)	96, 567
AloI	GAACNNNNNNTCC	2 cut(s)	459, 491
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	4 cut(s)	117, 122, 253, 479
AlwI	GGATC	3 cut(s)	8, 21, 195
AlwNI	CAGNNNCTG	1 cut(s)	556
Ama87I	CYCGRG	1 cut(s)	427
Aor13HI	TCCGGA	1 cut(s)	322
AoxI	GGCC	4 cut(s)	25, 54, 116, 151
ApeKI	GCWGC	3 cut(s)	145, 414, 489
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	3 cut(s)	26, 88, 152
AsuC2I	CCSGG	4 cut(s)	160, 428, 429, 464
AsuHPI	GGTGA	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	427
AvaII	GGWCC	1 cut(s)	88
BamHI	GGATCC	1 cut(s)	13
BarI	GAAGNNNNNNTAC	2 cut(s)	164, 196
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	3 cut(s)	132, 426, 501
BccI	CCATC	1 cut(s)	312
BceAI	ACGGC	1 cut(s)	60
BciT130I	CCWGG	2 cut(s)	98, 569
BcnI	CCSGG	4 cut(s)	160, 428, 429, 464
BcoDI	GTCTC	4 cut(s)	117, 122, 253, 479
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	83
BfoI	RGCGCY	1 cut(s)	107
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	5 cut(s)	102, 119, 146, 415, 490
BlsI	GCNGC	5 cut(s)	103, 120, 147, 416, 491
Bme1390I	CCNGG	6 cut(s)	98, 160, 428, 429, 464, 569
Bme18I	GGWCC	1 cut(s)	88
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmeT110I	CYCGRG	1 cut(s)	427
BmgBI	CACGTC	1 cut(s)	299
BmgT120I	GGNCC	3 cut(s)	26, 88, 152
BmiI	GGNNCC	3 cut(s)	15, 80, 154
BmrFI	CCNGG	6 cut(s)	98, 160, 428, 429, 464, 569
BmsI	GCATC	2 cut(s)	185, 207
BpmI	CTGGAG	1 cut(s)	53
BpuMI	CCSGG	4 cut(s)	160, 428, 429, 464
BsaAI	YACGTR	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	221
BsaJI	CCNNGG	3 cut(s)	17, 159, 427
BsaWI	WCCGGW	2 cut(s)	75, 322
BsaXI	ACNNNNNCTCC	4 cut(s)	459, 489, 512, 542
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 97, 160
Bse8I	GATNNNNATC	1 cut(s)	221
BseAI	TCCGGA	1 cut(s)	322
BseBI	CCWGG	2 cut(s)	98, 569
BseDI	CCNNGG	3 cut(s)	17, 159, 427
BseGI	GGATG	1 cut(s)	200
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	3 cut(s)	23, 97, 160
BseMII	CTCAG	1 cut(s)	386
BseRI	GAGGAG	1 cut(s)	309
BseX3I	CGGCCG	1 cut(s)	116
BseXI	GCAGC	3 cut(s)	132, 426, 501
Bsh1285I	CGRYCG	2 cut(s)	70, 119
BshFI	GGCC	4 cut(s)	27, 56, 118, 153
BsiEI	CGRYCG	2 cut(s)	70, 119
BsiHKAI	GWGCWC	1 cut(s)	513
BsiHKCI	CYCGRG	1 cut(s)	427
BsiSI	CCGG	7 cut(s)	76, 159, 252, 264, 323, 428, 463
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	3 cut(s)	23, 97, 160
BsmAI	GTCTC	4 cut(s)	117, 122, 253, 479
BsmBI	CGTCTC	2 cut(s)	117, 122
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	4 cut(s)	27, 56, 118, 153
BsoBI	CYCGRG	1 cut(s)	427
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp13I	TCCGGA	1 cut(s)	322
Bsp143I	GATC	7 cut(s)	13, 36, 187, 216, 270, 399, 436
Bsp19I	CCATGG	1 cut(s)	17
BspACI	CCGC	7 cut(s)	29, 47, 70, 101, 119, 211, 537
BspANI	GGCC	4 cut(s)	27, 56, 118, 153
BspCNI	CTCAG	1 cut(s)	385
BspEI	TCCGGA	1 cut(s)	322
BspLI	GGNNCC	3 cut(s)	15, 80, 154
BspPI	GGATC	3 cut(s)	8, 21, 195
BsrBI	CCGCTC	1 cut(s)	121
BssECI	CCNNGG	3 cut(s)	17, 159, 427
BssMI	GATC	7 cut(s)	13, 36, 187, 216, 270, 399, 436
BssT1I	CCWWGG	1 cut(s)	17
Bst2UI	CCWGG	2 cut(s)	98, 569
Bst4CI	ACNGT	4 cut(s)	232, 292, 445, 548
Bst6I	CTCTTC	1 cut(s)	530
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	5 cut(s)	29, 143, 257, 261, 557
BstDEI	CTNAG	1 cut(s)	372
BstDSI	CCRYGG	1 cut(s)	17
BstENI	CCTNNNNNAGG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	200
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	7 cut(s)	16, 39, 190, 219, 273, 402, 439
BstMAI	GTCTC	4 cut(s)	117, 122, 253, 479
BstMBI	GATC	7 cut(s)	13, 36, 187, 216, 270, 399, 436
BstMCI	CGRYCG	2 cut(s)	70, 119
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	2 cut(s)	98, 569
BstSCI	CCNGG	6 cut(s)	96, 158, 426, 427, 462, 567
BstSFI	CTRYAG	1 cut(s)	83
BstV1I	GCAGC	3 cut(s)	132, 426, 501
BstX2I	RGATCY	3 cut(s)	13, 187, 216
BstYI	RGATCY	3 cut(s)	13, 187, 216
BstZI	CGGCCG	1 cut(s)	116
BsuRI	GGCC	4 cut(s)	27, 56, 118, 153
BtgI	CCRYGG	1 cut(s)	17
BtrI	CACGTC	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	523
Cac8I	GCNNGC	5 cut(s)	29, 143, 257, 261, 557
CaiI	CAGNNNCTG	1 cut(s)	556
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	3 cut(s)	26, 88, 152
Cfr9I	CCCGGG	1 cut(s)	427
CseI	GACGC	2 cut(s)	139, 247
Csp6I	GTAC	3 cut(s)	181, 441, 446
CviAII	CATG	3 cut(s)	18, 308, 358
CviQI	GTAC	3 cut(s)	181, 441, 446
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	7 cut(s)	15, 38, 189, 218, 272, 401, 438
DpnII	GATC	7 cut(s)	13, 36, 187, 216, 270, 399, 436
DriI	GACNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	2 cut(s)	54, 116
EagI	CGGCCG	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	530
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	530
EciI	GGCGGA	1 cut(s)	62
EclXI	CGGCCG	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	88
Eco52I	CGGCCG	1 cut(s)	116
Eco88I	CYCGRG	1 cut(s)	427
EcoNI	CCTNNNNNAGG	1 cut(s)	95
EcoO109I	RGGNCCY	2 cut(s)	88, 152
EcoRII	CCWGG	2 cut(s)	96, 567
EcoT14I	CCWWGG	1 cut(s)	17
EcoT22I	ATGCAT	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	17
Esp3I	CGTCTC	2 cut(s)	117, 122
FaeI	CATG	3 cut(s)	21, 311, 361
FaiI	YATR	6 cut(s)	6, 19, 309, 359, 393, 533
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	3 cut(s)	17, 307, 357
FauI	CCCGC	1 cut(s)	36
Fnu4HI	GCNGC	5 cut(s)	102, 119, 146, 415, 490
FokI	GGATG	1 cut(s)	207
Fsp4HI	GCNGC	5 cut(s)	102, 119, 146, 415, 490
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	5 cut(s)	102, 119, 146, 415, 490
GsuI	CTGGAG	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	4 cut(s)	27, 56, 118, 153
HapII	CCGG	7 cut(s)	76, 159, 252, 264, 323, 428, 463
HgaI	GACGC	2 cut(s)	139, 247
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	21, 311, 361
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	2 cut(s)	50, 572
HpaII	CCGG	7 cut(s)	76, 159, 252, 264, 323, 428, 463
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	4 cut(s)	375, 455, 552, 577
Hpy188III	TCNNGA	4 cut(s)	226, 286, 323, 434
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	3 cut(s)	65, 68, 128
HpyCH4III	ACNGT	4 cut(s)	232, 292, 445, 548
HpyCH4IV	ACGT	2 cut(s)	183, 298
HpyCH4V	TGCA	2 cut(s)	198, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	2 cut(s)	183, 298
Hsp92II	CATG	3 cut(s)	21, 311, 361
HspAI	GCGC	1 cut(s)	104
Kpn2I	TCCGGA	1 cut(s)	322
Kzo9I	GATC	7 cut(s)	13, 36, 187, 216, 270, 399, 436
LmnI	GCTCC	2 cut(s)	163, 246
Lsp1109I	GCAGC	3 cut(s)	132, 426, 501
LweI	GCATC	2 cut(s)	185, 207
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	2 cut(s)	183, 298
MaeIII	GTNAC	3 cut(s)	299, 422, 518
MalI	GATC	7 cut(s)	15, 38, 189, 218, 272, 401, 438
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	7 cut(s)	13, 36, 187, 216, 270, 399, 436
MboII	GAAGA	5 cut(s)	181, 184, 187, 355, 517
MflI	RGATCY	3 cut(s)	13, 187, 216
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	1 cut(s)	403
MlyI	GAGTC	2 cut(s)	44, 566
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	6 cut(s)	101, 287, 327, 330, 509, 533
Mph1103I	ATGCAT	1 cut(s)	200
MroI	TCCGGA	1 cut(s)	322
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	7 cut(s)	76, 159, 252, 264, 323, 428, 463
MspR9I	CCNGG	6 cut(s)	98, 160, 428, 429, 464, 569
MvaI	CCWGG	2 cut(s)	98, 569
MwoI	GCNNNNNNNGC	1 cut(s)	53
NciI	CCSGG	4 cut(s)	160, 428, 429, 464
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	7 cut(s)	13, 36, 187, 216, 270, 399, 436
NlaIII	CATG	3 cut(s)	21, 311, 361
NlaIV	GGNNCC	3 cut(s)	15, 80, 154
NmeAIII	GCCGAG	2 cut(s)	32, 94
NmuCI	GTSAC	2 cut(s)	299, 518
NsiI	ATGCAT	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 288
PflMI	CCANNNNNTGG	1 cut(s)	23
PfoI	TCCNGGA	1 cut(s)	567
PkrI	GCNGC	5 cut(s)	103, 120, 147, 416, 491
PleI	GAGTC	2 cut(s)	44, 566
PpsI	GAGTC	2 cut(s)	44, 566
Ppu21I	YACGTR	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	88
Psp6I	CCWGG	2 cut(s)	96, 567
PspGI	CCWGG	2 cut(s)	96, 567
PspN4I	GGNNCC	3 cut(s)	15, 80, 154
PspPI	GGNCC	3 cut(s)	26, 88, 152
PspPPI	RGGWCCY	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	556
PsuI	RGATCY	3 cut(s)	13, 187, 216
RsaI	GTAC	3 cut(s)	182, 442, 447
RsaNI	GTAC	3 cut(s)	181, 441, 446
RseI	CAYNNNNRTG	1 cut(s)	306
SatI	GCNGC	5 cut(s)	102, 119, 146, 415, 490
Sau3AI	GATC	7 cut(s)	13, 36, 187, 216, 270, 399, 436
Sau96I	GGNCC	3 cut(s)	26, 88, 152
SchI	GAGTC	2 cut(s)	44, 566
ScrFI	CCNGG	6 cut(s)	98, 160, 428, 429, 464, 569
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	6 cut(s)	84, 93, 143, 186, 301, 525
SfaNI	GCATC	2 cut(s)	185, 207
SfcI	CTRYAG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	88
SmaI	CCCGGG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	1 cut(s)	403
SsiI	CCGC	7 cut(s)	29, 47, 70, 101, 119, 211, 537
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	6 cut(s)	96, 158, 426, 427, 462, 567
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	4 cut(s)	232, 292, 445, 548
TaiI	ACGT	2 cut(s)	186, 301
TaqI	TCGA	3 cut(s)	93, 123, 433
TaqII	GACCGA	1 cut(s)	412
TasI	AATT	1 cut(s)	403
TauI	GCSGC	2 cut(s)	104, 121
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	2 cut(s)	299, 518
TseI	GCWGC	3 cut(s)	145, 414, 489
Tsp45I	GTSAC	2 cut(s)	299, 518
TspMI	CCCGGG	1 cut(s)	427
TspRI	CASTG	1 cut(s)	523
Van91I	CCANNNNNTGG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	88
XagI	CCTNNNNNAGG	1 cut(s)	95
XmaI	CCCGGG	1 cut(s)	427
XspI	CTAG	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.