Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002638

Physical Location & Seq

Genomic Coordinates Reverse (-)

14333865 .. 14334581

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0174400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCTTGTGGTGGGAGAGTATGACAAGTTTGATCAGCCAGAGACGGTGGCTTTGAATTTGATGGAGACCTGGGTAGCGGTGAGGGGTCTTCCTCTTGCTCTGAGGAATAAGACGACGCTCAATTTGGTGGGTACGACGCTAGGGCAAGTGGTTCGAATGGATTTGACTGCCCTGAAAAGAAAAGAAGAAGAGCAGCGGATCAAGATTGTGTTTGATGTTCGTCAGTGGATCCGTACATGGAAAGTAGTTGAATTTTCTCTGGTGGTGAGGCCGGAATTAACGTTCATCTATGAGAAGATCAAGGGATATTGTCGTGACTGTGGTTTGTTTATTCATGATGCTATGGGATGTGACAAAACTTTGATCAAGGAAAAGGAAGAGCTTCTGGCACGATCATCGGTGGCGGCAATGGCCGGTTTGTCCTTGACCTCGAGGAAGGATGTAGTGCCCTCTGTGATGGAGACGGAGTTGGGCACGGGACGTACTGATCTCGTTTGTGGGGAGGATGTCTCGGGCTTGTCGGATCAGGGTGCTGGGACATTGCGTGTTGGAGTCGATAGTAGGGCAACAGGGACCAGTTCTGATTTCTTGAGTTCCACGTTGCTGGAGCACTTGTCTTCTGTAGGGAGAGTGAATCCCCAAGCTCCTCTACTCATTACCCAGCAAAATGCTACTTCAGCATCATTGGTTTTGAATCCACTGATGTCTGAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008152 GO:0008810 GO:0009058 GO:0009059 GO:0009250 GO:0009504 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042538 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0051704 GO:0051707 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

238

Amino Acids

26.17

Weight (kDa)

5.57

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24260 AT4G24260 AT4G24260 AT5G49720
fragaria_vesca	FvH4_5g27130 FvH4_5g27130 FvH4_5g27130 FvH4_5g27130
malus_domestica	MD04G1170800.v1.1 MD08G1250900.v1.1 MD15G1445800.v1.1
prunus_persica	Prupe.1G587900_v2.0.a1 Prupe.3G082700_v2.0.a1
pyrus_communis	pycom04g15140 pycom08g21760 pycom15g39260 pycom15g39270
rosa_chinensis	RchiOBHm_Chr7g0218131
rosa_laevigata	RLG00000002397 RLG00000003204 RLG00000029460
rosa_multiflora	Rmu_sc0000054.1_g000022 Rmu_sc0003627.1_g000012 Rmu_sc0031732.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233940 Rroxscaffold_3G00241280
rosa_rugosa	Rorug01G0072800 Rorug02G0384500 Rorug04G0442400 Rorug07G0174400
rosa_samantha	Rh4CG311700 Rh4DG293000 Rh6BG152200 Rh6DG136400 Rh7AG316800 Rh7BG307900 Rh7BG308000 Rh7CG333700 Rh7DG315700
rosa_wichuraiana	Rw7G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	430
AciI	CCGC	3 cut(s)	77, 196, 404
AclI	AACGTT	1 cut(s)	281
AclWI	GGATC	4 cut(s)	206, 223, 236, 531
AcoI	YGGCCR	1 cut(s)	411
AcsI	RAATTY	2 cut(s)	55, 251
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	3 cut(s)	133, 235, 484
AgsI	TTSAA	3 cut(s)	55, 251, 694
AjnI	CCWGG	1 cut(s)	68
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AluBI	AGCT	2 cut(s)	382, 644
AluI	AGCT	2 cut(s)	382, 644
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	4 cut(s)	35, 59, 455, 514
AlwI	GGATC	4 cut(s)	206, 223, 236, 531
Ama87I	CYCGRG	2 cut(s)	430, 511
AoxI	GGCC	2 cut(s)	269, 411
ApeKI	GCWGC	1 cut(s)	193
ApoI	RAATTY	2 cut(s)	55, 251
ArsI	GACNNNNNNTTYG	4 cut(s)	34, 66, 106, 138
Asp700I	GAANNNNTTC	1 cut(s)	381
AspS9I	GGNCC	1 cut(s)	573
AsuHPI	GGTGA	2 cut(s)	91, 277
AsuII	TTCGAA	1 cut(s)	154
AvaI	CYCGRG	2 cut(s)	430, 511
AvaII	GGWCC	1 cut(s)	573
BaeGI	GKGCMC	2 cut(s)	450, 476
BamHI	GGATCC	1 cut(s)	228
BbsI	GAAGAC	2 cut(s)	80, 609
Bbv12I	GWGCWC	1 cut(s)	612
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	2 cut(s)	55, 451
BcgI	CGANNNNNNTGC	4 cut(s)	134, 168, 378, 412
BciT130I	CCWGG	1 cut(s)	70
BclI	TGATCA	2 cut(s)	31, 363
BcoDI	GTCTC	4 cut(s)	35, 59, 455, 514
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	621
BisI	GCNGC	2 cut(s)	194, 405
BlsI	GCNGC	2 cut(s)	195, 406
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	573
BmeT110I	CYCGRG	2 cut(s)	430, 511
BmgT120I	GGNCC	1 cut(s)	573
BmiI	GGNNCC	2 cut(s)	230, 574
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	2 cut(s)	328, 689
BpiI	GAAGAC	2 cut(s)	80, 609
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
BpmI	CTGGAG	1 cut(s)	626
Bpu14I	TTCGAA	1 cut(s)	154
BpuEI	CTTGAG	1 cut(s)	610
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	4 cut(s)	452, 482, 599, 629
Bse118I	RCCGGY	1 cut(s)	413
Bse1I	ACTGG	1 cut(s)	576
Bse3DI	GCAATG	2 cut(s)	414, 539
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	3 cut(s)	353, 445, 511
BseMI	GCAATG	2 cut(s)	414, 539
BseMII	CTCAG	2 cut(s)	92, 699
BseNI	ACTGG	1 cut(s)	576
BseRI	GAGGAG	1 cut(s)	636
BseSI	GKGCMC	2 cut(s)	450, 476
BseXI	GCAGC	1 cut(s)	205
BseYI	CCCAGC	2 cut(s)	533, 660
BshFI	GGCC	2 cut(s)	271, 413
BsiHKAI	GWGCWC	1 cut(s)	612
BsiHKCI	CYCGRG	2 cut(s)	430, 511
BsiSI	CCGG	2 cut(s)	272, 414
BslFI	GGGAC	3 cut(s)	492, 550, 586
BsmAI	GTCTC	4 cut(s)	35, 59, 455, 514
BsmBI	CGTCTC	2 cut(s)	35, 455
BsmFI	GGGAC	3 cut(s)	492, 550, 586
BsnI	GGCC	2 cut(s)	271, 413
Bso31I	GGTCTC	1 cut(s)	59
BsoBI	CYCGRG	2 cut(s)	430, 511
Bsp119I	TTCGAA	1 cut(s)	154
Bsp1286I	GDGCHC	3 cut(s)	450, 476, 612
Bsp143I	GATC	8 cut(s)	31, 198, 228, 297, 363, 392, 487, 523
BspACI	CCGC	3 cut(s)	77, 196, 404
BspANI	GGCC	2 cut(s)	271, 413
BspCNI	CTCAG	2 cut(s)	93, 700
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	230, 574
BspPI	GGATC	4 cut(s)	206, 223, 236, 531
BspQI	GCTCTTC	2 cut(s)	183, 372
BspT104I	TTCGAA	1 cut(s)	154
BspTNI	GGTCTC	1 cut(s)	59
BsrDI	GCAATG	2 cut(s)	414, 539
BsrFI	RCCGGY	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	576
BssAI	RCCGGY	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	8 cut(s)	31, 198, 228, 297, 363, 392, 487, 523
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	46, 320
Bst6I	CTCTTC	2 cut(s)	183, 372
BstBI	TTCGAA	1 cut(s)	154
BstDEI	CTNAG	2 cut(s)	101, 708
BstF5I	GGATG	3 cut(s)	353, 445, 511
BstKTI	GATC	8 cut(s)	34, 201, 231, 300, 366, 395, 490, 526
BstMAI	GTCTC	4 cut(s)	35, 59, 455, 514
BstMBI	GATC	8 cut(s)	31, 198, 228, 297, 363, 392, 487, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 677
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	621
BstSLI	GKGCMC	2 cut(s)	450, 476
BstV1I	GCAGC	1 cut(s)	205
BstV2I	GAAGAC	2 cut(s)	80, 609
BstX2I	RGATCY	1 cut(s)	228
BstXI	CCANNNNNNTGG	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	271, 413
BtsCI	GGATG	3 cut(s)	353, 445, 511
BtsIMutI	CAGTG	2 cut(s)	230, 698
CciI	TCATGA	1 cut(s)	334
Cfr10I	RCCGGY	1 cut(s)	413
Cfr13I	GGNCC	1 cut(s)	573
CseI	GACGC	2 cut(s)	124, 145
Csp6I	GTAC	3 cut(s)	132, 234, 483
CviAII	CATG	2 cut(s)	237, 335
CviJI	RGCY	7 cut(s)	37, 50, 271, 382, 413, 516, 644
CviKI_1	RGCY	7 cut(s)	37, 50, 271, 382, 413, 516, 644
CviQI	GTAC	3 cut(s)	132, 234, 483
DdeI	CTNAG	2 cut(s)	101, 708
DpnI	GATC	8 cut(s)	33, 200, 230, 299, 365, 394, 489, 525
DpnII	GATC	8 cut(s)	31, 198, 228, 297, 363, 392, 487, 523
EaeI	YGGCCR	1 cut(s)	411
Eam1104I	CTCTTC	2 cut(s)	183, 372
EarI	CTCTTC	2 cut(s)	183, 372
Eco31I	GGTCTC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	573
Eco57I	CTGAAG	1 cut(s)	660
Eco88I	CYCGRG	2 cut(s)	430, 511
EcoRII	CCWGG	1 cut(s)	68
Esp3I	CGTCTC	2 cut(s)	35, 455
FaeI	CATG	2 cut(s)	240, 338
FaiI	YATR	5 cut(s)	21, 238, 291, 336, 344
FaqI	GGGAC	3 cut(s)	492, 550, 586
FatI	CATG	2 cut(s)	236, 334
FbaI	TGATCA	2 cut(s)	31, 363
Fnu4HI	GCNGC	2 cut(s)	194, 405
FokI	GGATG	3 cut(s)	360, 452, 518
Fsp4HI	GCNGC	2 cut(s)	194, 405
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	2 cut(s)	194, 405
GsaI	CCCAGC	2 cut(s)	537, 664
GsuI	CTGGAG	1 cut(s)	626
HaeIII	GGCC	2 cut(s)	271, 413
HapII	CCGG	2 cut(s)	272, 414
HgaI	GACGC	2 cut(s)	124, 145
Hin1II	CATG	2 cut(s)	240, 338
HinfI	GANTC	3 cut(s)	552, 634, 694
HpaII	CCGG	2 cut(s)	272, 414
HphI	GGTGA	2 cut(s)	91, 277
Hpy188I	TCNGA	5 cut(s)	102, 523, 583, 709, 716
Hpy188III	TCNNGA	4 cut(s)	202, 314, 335, 589
Hpy99I	CGWCG	2 cut(s)	118, 139
HpyAV	CCTTC	1 cut(s)	430
HpyCH4III	ACNGT	2 cut(s)	46, 320
HpyCH4IV	ACGT	3 cut(s)	281, 481, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 677
HpyF3I	CTNAG	2 cut(s)	101, 708
HpySE526I	ACGT	3 cut(s)	281, 481, 599
Hsp92II	CATG	2 cut(s)	240, 338
Ksp22I	TGATCA	2 cut(s)	31, 363
Kzo9I	GATC	8 cut(s)	31, 198, 228, 297, 363, 392, 487, 523
LguI	GCTCTTC	2 cut(s)	183, 372
LmnI	GCTCC	2 cut(s)	607, 649
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	2 cut(s)	328, 689
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	3 cut(s)	281, 481, 599
MaeIII	GTNAC	2 cut(s)	314, 350
MalI	GATC	8 cut(s)	33, 200, 230, 299, 365, 394, 489, 525
MboI	GATC	8 cut(s)	31, 198, 228, 297, 363, 392, 487, 523
MboII	GAAGA	6 cut(s)	80, 197, 200, 307, 389, 609
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	3 cut(s)	450, 476, 612
MluCI	AATT	4 cut(s)	55, 121, 251, 275
MlyI	GAGTC	1 cut(s)	561
MmeI	TCCRAC	2 cut(s)	501, 529
MroXI	GAANNNNTTC	1 cut(s)	381
MseI	TTAA	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	2 cut(s)	272, 414
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	410, 677
NdeII	GATC	8 cut(s)	31, 198, 228, 297, 363, 392, 487, 523
NlaIII	CATG	2 cut(s)	240, 338
NlaIV	GGNNCC	2 cut(s)	230, 574
NmuCI	GTSAC	2 cut(s)	314, 350
NspV	TTCGAA	1 cut(s)	154
PaeR7I	CTCGAG	1 cut(s)	430
PagI	TCATGA	1 cut(s)	334
PciSI	GCTCTTC	2 cut(s)	183, 372
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	634, 694
PkrI	GCNGC	2 cut(s)	195, 406
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
Psp1406I	AACGTT	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	68
PspFI	CCCAGC	2 cut(s)	533, 660
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	230, 574
PspPI	GGNCC	1 cut(s)	573
PspXI	VCTCGAGB	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	3 cut(s)	133, 235, 484
RsaNI	GTAC	3 cut(s)	132, 234, 483
SapI	GCTCTTC	2 cut(s)	183, 372
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	2 cut(s)	194, 405
Sau3AI	GATC	8 cut(s)	31, 198, 228, 297, 363, 392, 487, 523
Sau96I	GGNCC	1 cut(s)	573
SchI	GAGTC	1 cut(s)	561
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	3 cut(s)	450, 476, 612
SetI	ASST	8 cut(s)	71, 284, 384, 431, 484, 602, 646, 714
SfaNI	GCATC	2 cut(s)	328, 689
SfcI	CTRYAG	1 cut(s)	621
Sfr274I	CTCGAG	1 cut(s)	430
SfuI	TTCGAA	1 cut(s)	154
SinI	GGWCC	1 cut(s)	573
SlaI	CTCGAG	1 cut(s)	430
SmlI	CTYRAG	2 cut(s)	430, 589
SmoI	CTYRAG	2 cut(s)	430, 589
Sse9I	AATT	4 cut(s)	55, 121, 251, 275
SsiI	CCGC	3 cut(s)	77, 196, 404
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	46, 320
TaiI	ACGT	3 cut(s)	284, 484, 602
TaqI	TCGA	3 cut(s)	154, 431, 555
TasI	AATT	4 cut(s)	55, 121, 251, 275
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	2 cut(s)	634, 694
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	2 cut(s)	230, 705
TseFI	GTSAC	2 cut(s)	314, 350
TseI	GCWGC	1 cut(s)	193
Tsp45I	GTSAC	2 cut(s)	314, 350
TspDTI	ATGAA	2 cut(s)	274, 323
TspGWI	ACGGA	2 cut(s)	221, 479
TspRI	CASTG	2 cut(s)	230, 705
VpaK11BI	GGWCC	1 cut(s)	573
XapI	RAATTY	2 cut(s)	55, 251
XhoI	CTCGAG	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.