Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002638

Physical Location & Seq

Genomic Coordinates Reverse (-)

11908816 .. 11909999

Gene Structure 1184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0072800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGATGTCGCCGTCTCCAACAAGATGGTGGAGCAGCGATCAGGAAATCGGAGTGGGTCGGAGTGGGTCGGAGGTAATAAATTGGTAAAGAATAGTTTGAAAGCCAAGAATGAACTGTTGGAATCTTCTGAAGAAGAAGGGTTAGGTGCAAATGTTCGAGTAGATTTTTCATTCTTTGATCCAAAAGGCAATGACTTTCATGGAGTGAAGACCTTGCTGCAGACCTACCTTGATGATAAAGAGTGGGATTTGAGTGGTTTCGTAGACTTAATATTGGAACAGACCACTGTAGGGTCTGTTGTTAAAATAGAGGATGATGAAGAAAATGGAATTTTTGCTCTTGTTACGACCGCTCTTAACTTGGGCAGATATAAGGCAAGTAACCTATACTTTTGCGTTCTAGACTATAAATGTATGACGGAGATTAAGGAGTTTCTCCTGAAAGTATCTGAGGAGAAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008152 GO:0008810 GO:0009058 GO:0009059 GO:0009250 GO:0009504 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9 Mlo

Protein Analysis

154

Amino Acids

17.29

Weight (kDa)

4.65

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BCCIP	PF13862	52 - 151	1.8e-23	BCCIP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24260 AT4G24260 AT4G24260 AT5G49720
fragaria_vesca	FvH4_5g27130 FvH4_5g27130 FvH4_5g27130 FvH4_5g27130
malus_domestica	MD04G1170800.v1.1 MD08G1250900.v1.1 MD15G1445800.v1.1
prunus_persica	Prupe.1G587900_v2.0.a1 Prupe.3G082700_v2.0.a1
pyrus_communis	pycom04g15140 pycom08g21760 pycom15g39260 pycom15g39270
rosa_chinensis	RchiOBHm_Chr7g0218131
rosa_laevigata	RLG00000002397 RLG00000003204 RLG00000029460
rosa_multiflora	Rmu_sc0000054.1_g000022 Rmu_sc0003627.1_g000012 Rmu_sc0031732.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233940 Rroxscaffold_3G00241280
rosa_rugosa	Rorug01G0072800 Rorug02G0384500 Rorug04G0442400 Rorug07G0174400
rosa_samantha	Rh4CG311700 Rh4DG293000 Rh6BG152200 Rh6DG136400 Rh7AG316800 Rh7BG307900 Rh7BG308000 Rh7CG333700 Rh7DG315700
rosa_wichuraiana	Rw7G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	264
AciI	CCGC	1 cut(s)	351
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	330
AcuI	CTGAAG	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	291
AgsI	TTSAA	1 cut(s)	100
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	34, 217
ApoI	RAATTY	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	215
BbvI	GCAGC	2 cut(s)	46, 204
BccI	CCATC	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	2 cut(s)	218, 288
BisI	GCNGC	2 cut(s)	35, 218
BlsI	GCNGC	2 cut(s)	36, 219
BpiI	GAAGAC	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	10, 319
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	441
BseXI	GCAGC	2 cut(s)	46, 204
Bsh1285I	CGRYCG	1 cut(s)	351
BsiEI	CGRYCG	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmAI	GTCTC	1 cut(s)	19
BsmBI	CGTCTC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	38, 178
BspACI	CCGC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	442
BspMAI	CTGCAG	1 cut(s)	222
BspPI	GGATC	1 cut(s)	173
BsrBI	CCGCTC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	196
BssMI	GATC	2 cut(s)	38, 178
Bst4CI	ACNGT	2 cut(s)	117, 289
BstDEI	CTNAG	1 cut(s)	450
BstF5I	GGATG	2 cut(s)	10, 319
BstKTI	GATC	2 cut(s)	41, 181
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	2 cut(s)	38, 178
BstMCI	CGRYCG	1 cut(s)	351
BstSFI	CTRYAG	2 cut(s)	218, 288
BstV1I	GCAGC	2 cut(s)	46, 204
BstV2I	GAAGAC	1 cut(s)	215
BstXI	CCANNNNNNTGG	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	10, 319
BtsIMutI	CAGTG	1 cut(s)	285
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	1 cut(s)	104
CviKI_1	RGCY	1 cut(s)	104
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	2 cut(s)	40, 180
DpnII	GATC	2 cut(s)	38, 178
Eco57I	CTGAAG	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	1 cut(s)	203
FaiI	YATR	5 cut(s)	201, 372, 388, 408, 416
FatI	CATG	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	2 cut(s)	35, 218
FokI	GGATG	2 cut(s)	17, 326
Fsp4HI	GCNGC	2 cut(s)	35, 218
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	2 cut(s)	35, 218
Hin1II	CATG	1 cut(s)	203
HinfI	GANTC	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	5 cut(s)	51, 61, 71, 130, 451
Hpy188III	TCNNGA	3 cut(s)	42, 401, 439
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	131, 451
HpyCH4III	ACNGT	2 cut(s)	117, 289
HpyCH4V	TGCA	2 cut(s)	149, 220
HpyF3I	CTNAG	1 cut(s)	450
Hsp92II	CATG	1 cut(s)	203
Kzo9I	GATC	2 cut(s)	38, 178
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	2 cut(s)	27, 452
Lsp1109I	GCAGC	2 cut(s)	46, 204
MaeI	CTAG	1 cut(s)	401
MaeIII	GTNAC	2 cut(s)	343, 380
MalI	GATC	2 cut(s)	40, 180
MbiI	CCGCTC	1 cut(s)	353
MboI	GATC	2 cut(s)	38, 178
MboII	GAAGA	5 cut(s)	117, 143, 146, 220, 332
MluCI	AATT	2 cut(s)	80, 330
MmeI	TCCRAC	4 cut(s)	39, 42, 49, 99
MnlI	CCTC	3 cut(s)	65, 304, 445
MseI	TTAA	4 cut(s)	269, 303, 357, 426
NdeII	GATC	2 cut(s)	38, 178
NlaIII	CATG	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	36, 219
PstI	CTGCAG	1 cut(s)	222
SaqAI	TTAA	4 cut(s)	269, 303, 357, 426
SatI	GCNGC	2 cut(s)	35, 218
Sau3AI	GATC	2 cut(s)	38, 178
SetI	ASST	6 cut(s)	76, 148, 215, 227, 231, 387
SfcI	CTRYAG	2 cut(s)	218, 288
Sse9I	AATT	2 cut(s)	80, 330
SsiI	CCGC	1 cut(s)	351
SspI	AATATT	1 cut(s)	273
SspMI	CTAG	1 cut(s)	401
TaaI	ACNGT	2 cut(s)	117, 289
TaqI	TCGA	1 cut(s)	157
TasI	AATT	2 cut(s)	80, 330
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	4 cut(s)	269, 303, 357, 426
Tru9I	TTAA	4 cut(s)	269, 303, 357, 426
TscAI	CASTG	1 cut(s)	292
TseI	GCWGC	2 cut(s)	34, 217
TspDTI	ATGAA	4 cut(s)	126, 159, 188, 333
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	1 cut(s)	292
XapI	RAATTY	1 cut(s)	330
XbaI	TCTAGA	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	264
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.