Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002638

Physical Location & Seq

Genomic Coordinates Reverse (-)

19523446 .. 19524623

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG136400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTATGACAGGGATCCATGGGGTGGCCCGCTGGAGATCAACACGGCGGACTCGGCCACCGACGACGACCGCAACCGGAACCTACAGGACCTCGACCAGGCGGCGCTGTCGTCTCGGCCGCTCGACGAGACGCAACAGAGCTGGCTGCTAGGCCCCACCGGGGAGCAGAAGAAGAAGAAGTACGTGGATCTGGGATGCATCATCGTCAACCGCAAGATCTTTATCTGGACGGTAGGGACGCTCCTTGTCTCCGGCTTGCTCGCCGGACTGATCGTCCTCATCGTCAAGACCGTGCCACGTCACCATCATGCCAAGCCTCCTCCGGACAACTACACTCTCGCTCTCCACAAGGCTCTCATGTTCTTCAACGCTCAGAAATGTCAGTTTATTTTTGAGTCTAGGCTAATTTTTTTTTTTTTTGGAAAGTTTGAGTTGAGTCTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008152 GO:0008810 GO:0009058 GO:0009059 GO:0009250 GO:0009504 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042538 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048367 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0051704 GO:0051707 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

148

Amino Acids

16.88

Weight (kDa)

8.57

Isoelectric Point (pI)

26.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24260 AT4G24260 AT4G24260 AT5G49720
fragaria_vesca	FvH4_5g27130 FvH4_5g27130 FvH4_5g27130 FvH4_5g27130
malus_domestica	MD04G1170800.v1.1 MD08G1250900.v1.1 MD15G1445800.v1.1
prunus_persica	Prupe.1G587900_v2.0.a1 Prupe.3G082700_v2.0.a1
pyrus_communis	pycom04g15140 pycom08g21760 pycom15g39260 pycom15g39270
rosa_chinensis	RchiOBHm_Chr7g0218131
rosa_laevigata	RLG00000002397 RLG00000003204 RLG00000029460
rosa_multiflora	Rmu_sc0000054.1_g000022 Rmu_sc0003627.1_g000012 Rmu_sc0031732.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233940 Rroxscaffold_3G00241280
rosa_rugosa	Rorug01G0072800 Rorug02G0384500 Rorug04G0442400 Rorug07G0174400
rosa_samantha	Rh4CG311700 Rh4DG293000 Rh6BG152200 Rh6DG136400 Rh7AG316800 Rh7BG307900 Rh7BG308000 Rh7CG333700 Rh7DG315700
rosa_wichuraiana	Rw7G026810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	23
AccBSI	CCGCTC	1 cut(s)	121
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	6 cut(s)	29, 47, 70, 101, 119, 211
AclWI	GGATC	3 cut(s)	8, 21, 195
AcoI	YGGCCR	2 cut(s)	54, 116
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	23, 97, 160
AgsI	TTSAA	1 cut(s)	367
AhdI	GACNNNNNGTC	1 cut(s)	272
AjiI	CACGTC	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
Alw26I	GTCTC	3 cut(s)	117, 122, 253
AlwI	GGATC	3 cut(s)	8, 21, 195
Aor13HI	TCCGGA	1 cut(s)	322
AoxI	GGCC	4 cut(s)	25, 54, 116, 151
ApeKI	GCWGC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	3 cut(s)	26, 88, 152
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	88
BamHI	GGATCC	1 cut(s)	13
BarI	GAAGNNNNNNTAC	2 cut(s)	164, 196
BbvI	GCAGC	1 cut(s)	132
BccI	CCATC	1 cut(s)	312
BceAI	ACGGC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	3 cut(s)	117, 122, 253
BfaI	CTAG	2 cut(s)	149, 399
BfmI	CTRYAG	1 cut(s)	83
BfoI	RGCGCY	1 cut(s)	107
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	3 cut(s)	102, 119, 146
BlsI	GCNGC	3 cut(s)	103, 120, 147
Bme1390I	CCNGG	2 cut(s)	98, 160
Bme18I	GGWCC	1 cut(s)	88
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmgBI	CACGTC	1 cut(s)	299
BmgT120I	GGNCC	3 cut(s)	26, 88, 152
BmiI	GGNNCC	3 cut(s)	15, 80, 154
BmrFI	CCNGG	2 cut(s)	98, 160
BmsI	GCATC	2 cut(s)	185, 207
BpmI	CTGGAG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	160
BsaAI	YACGTR	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	17, 159
BsaWI	WCCGGW	2 cut(s)	75, 322
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 97, 160
Bse8I	GATNNNNATC	1 cut(s)	221
BseAI	TCCGGA	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	17, 159
BseGI	GGATG	1 cut(s)	200
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	3 cut(s)	23, 97, 160
BseMII	CTCAG	1 cut(s)	386
BseRI	GAGGAG	1 cut(s)	309
BseX3I	CGGCCG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	132
Bsh1285I	CGRYCG	2 cut(s)	70, 119
BshFI	GGCC	4 cut(s)	27, 56, 118, 153
BsiEI	CGRYCG	2 cut(s)	70, 119
BsiSI	CCGG	5 cut(s)	76, 159, 252, 264, 323
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	3 cut(s)	23, 97, 160
BsmAI	GTCTC	3 cut(s)	117, 122, 253
BsmBI	CGTCTC	2 cut(s)	117, 122
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	4 cut(s)	27, 56, 118, 153
Bsp13I	TCCGGA	1 cut(s)	322
Bsp143I	GATC	5 cut(s)	13, 36, 187, 216, 270
Bsp19I	CCATGG	1 cut(s)	17
BspACI	CCGC	6 cut(s)	29, 47, 70, 101, 119, 211
BspANI	GGCC	4 cut(s)	27, 56, 118, 153
BspCNI	CTCAG	1 cut(s)	385
BspEI	TCCGGA	1 cut(s)	322
BspLI	GGNNCC	3 cut(s)	15, 80, 154
BspPI	GGATC	3 cut(s)	8, 21, 195
BsrBI	CCGCTC	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	17, 159
BssMI	GATC	5 cut(s)	13, 36, 187, 216, 270
BssT1I	CCWWGG	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	232, 292
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	4 cut(s)	29, 143, 257, 261
BstDEI	CTNAG	1 cut(s)	372
BstDSI	CCRYGG	1 cut(s)	17
BstENI	CCTNNNNNAGG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	200
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	5 cut(s)	16, 39, 190, 219, 273
BstMAI	GTCTC	3 cut(s)	117, 122, 253
BstMBI	GATC	5 cut(s)	13, 36, 187, 216, 270
BstMCI	CGRYCG	2 cut(s)	70, 119
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	2 cut(s)	96, 158
BstSFI	CTRYAG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	132
BstX2I	RGATCY	3 cut(s)	13, 187, 216
BstYI	RGATCY	3 cut(s)	13, 187, 216
BstZI	CGGCCG	1 cut(s)	116
BsuRI	GGCC	4 cut(s)	27, 56, 118, 153
BtgI	CCRYGG	1 cut(s)	17
BtrI	CACGTC	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	200
Cac8I	GCNNGC	4 cut(s)	29, 143, 257, 261
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	3 cut(s)	26, 88, 152
CseI	GACGC	2 cut(s)	139, 247
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	3 cut(s)	18, 308, 358
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	5 cut(s)	15, 38, 189, 218, 272
DpnII	GATC	5 cut(s)	13, 36, 187, 216, 270
DriI	GACNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	2 cut(s)	54, 116
EagI	CGGCCG	1 cut(s)	116
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	62
EclXI	CGGCCG	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	88
Eco52I	CGGCCG	1 cut(s)	116
EcoNI	CCTNNNNNAGG	1 cut(s)	95
EcoO109I	RGGNCCY	2 cut(s)	88, 152
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	17
EcoT22I	ATGCAT	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	17
Esp3I	CGTCTC	2 cut(s)	117, 122
FaeI	CATG	3 cut(s)	21, 311, 361
FaiI	YATR	4 cut(s)	6, 19, 309, 359
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	3 cut(s)	17, 307, 357
FauI	CCCGC	1 cut(s)	36
Fnu4HI	GCNGC	3 cut(s)	102, 119, 146
FokI	GGATG	1 cut(s)	207
Fsp4HI	GCNGC	3 cut(s)	102, 119, 146
FspBI	CTAG	2 cut(s)	149, 399
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	3 cut(s)	102, 119, 146
GsuI	CTGGAG	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	4 cut(s)	27, 56, 118, 153
HapII	CCGG	5 cut(s)	76, 159, 252, 264, 323
HgaI	GACGC	2 cut(s)	139, 247
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	21, 311, 361
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	3 cut(s)	50, 395, 436
HpaII	CCGG	5 cut(s)	76, 159, 252, 264, 323
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	3 cut(s)	226, 286, 323
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	3 cut(s)	65, 68, 128
HpyCH4III	ACNGT	2 cut(s)	232, 292
HpyCH4IV	ACGT	2 cut(s)	183, 298
HpyCH4V	TGCA	1 cut(s)	198
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	2 cut(s)	183, 298
Hsp92II	CATG	3 cut(s)	21, 311, 361
HspAI	GCGC	1 cut(s)	104
Kpn2I	TCCGGA	1 cut(s)	322
Kzo9I	GATC	5 cut(s)	13, 36, 187, 216, 270
LmnI	GCTCC	2 cut(s)	163, 246
Lsp1109I	GCAGC	1 cut(s)	132
LweI	GCATC	2 cut(s)	185, 207
MaeI	CTAG	2 cut(s)	149, 399
MaeII	ACGT	2 cut(s)	183, 298
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	5 cut(s)	15, 38, 189, 218, 272
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	5 cut(s)	13, 36, 187, 216, 270
MboII	GAAGA	4 cut(s)	181, 184, 187, 355
MflI	RGATCY	3 cut(s)	13, 187, 216
MluCI	AATT	1 cut(s)	405
MlyI	GAGTC	3 cut(s)	44, 404, 445
MnlI	CCTC	4 cut(s)	101, 287, 327, 330
Mph1103I	ATGCAT	1 cut(s)	200
MroI	TCCGGA	1 cut(s)	322
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	5 cut(s)	76, 159, 252, 264, 323
MspR9I	CCNGG	2 cut(s)	98, 160
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	53
NciI	CCSGG	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	5 cut(s)	13, 36, 187, 216, 270
NlaIII	CATG	3 cut(s)	21, 311, 361
NlaIV	GGNNCC	3 cut(s)	15, 80, 154
NmeAIII	GCCGAG	2 cut(s)	32, 94
NmuCI	GTSAC	1 cut(s)	299
NsiI	ATGCAT	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 288
PflMI	CCANNNNNTGG	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	103, 120, 147
PleI	GAGTC	3 cut(s)	44, 403, 444
PpsI	GAGTC	3 cut(s)	44, 403, 444
Ppu21I	YACGTR	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	3 cut(s)	15, 80, 154
PspPI	GGNCC	3 cut(s)	26, 88, 152
PspPPI	RGGWCCY	1 cut(s)	88
PsuI	RGATCY	3 cut(s)	13, 187, 216
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	3 cut(s)	102, 119, 146
Sau3AI	GATC	5 cut(s)	13, 36, 187, 216, 270
Sau96I	GGNCC	3 cut(s)	26, 88, 152
SchI	GAGTC	3 cut(s)	44, 404, 445
ScrFI	CCNGG	2 cut(s)	98, 160
SetI	ASST	5 cut(s)	84, 93, 143, 186, 301
SfaNI	GCATC	2 cut(s)	185, 207
SfcI	CTRYAG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	1 cut(s)	405
SsiI	CCGC	6 cut(s)	29, 47, 70, 101, 119, 211
SspMI	CTAG	2 cut(s)	149, 399
StyD4I	CCNGG	2 cut(s)	96, 158
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	2 cut(s)	232, 292
TaiI	ACGT	2 cut(s)	186, 301
TaqI	TCGA	2 cut(s)	93, 123
TasI	AATT	1 cut(s)	405
TauI	GCSGC	2 cut(s)	104, 121
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	299
Van91I	CCANNNNNTGG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	88
XagI	CCTNNNNNAGG	1 cut(s)	95
XspI	CTAG	2 cut(s)	149, 399
Zsp2I	ATGCAT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.