Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002754

Physical Location & Seq

Genomic Coordinates Forward (+)

4886494 .. 4888109

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04150.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCCACTGCCGCCTTGCTCCGCTCGATGCGCCGACGTGATGTCGCATCGTCTCCTCTCTGCGCCTACCGATCCTTGAACAGCGCATCTATGTCATCCCATCTTGCTCAAAAATGGGCAAGCTTGGCAAGACCTTTCAGTTCCAAACCTGCTGGAAATGATGTTATTGGCATTGACTTGGGTACAACCAACTCATGCGTGGCCGTGATGGAAGGAAAGAACCCTAAAGTGATTGAGAATTCCGAAGGAGCTCGAACCACACCATCAGTAGTTGCTTTCAACCAGAAAGGAGAACTATTGGTTGGTACGCCAGCAAAACGTCAAGCTGTTACCAACCCCACAAACACAGTTTTTGGAACCAAGCGTCTGATTGGTAGACGCTTTGAGGATCCCCAAACTCAAAAAGAAATGAAGATGGTTCCATACAAGATAGTAAAGGCTCCAAATGGAGATGCTTGGGTTGAAGTCAACGGACAGAAGTACTCCCCAAGCCAAATTGGAGCCTTTGTTCTAACAAAGATGAAAGAGACTGCGGAGGCTTACCTTGGAAAGAATGTCTCAAAAGCTGTGATTACAGTTCCAGCTTATTTCAATGATGCACAGAGACAAGCAACCAAGGATGCTGGCAGAATTGCAGGTCTAGATGTGCAGAGAATCATCAATGAGCCAACTGCTGCTGCACTTTCCTATGGAATGAACAACAAGGAAGGGCTCATAGCAGTGTTTGATCTTGGTGGGGGAACATTTGATGTATCCATTCTCGAGATATCCAATGGTGTTTTTGAGGTTTGTGAAAGCAACAAATGGCGACACATTCTTGGGAGGAGAGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko05152 map03018 map04212 map05152

Pfam Domains

Protein Families

HSP70

Protein Analysis

279

Amino Acids

30.09

Weight (kDa)

9.71

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37910 AT4G37910 AT5G09590
fragaria_vesca	FvH4_2g11170
malus_domestica	MD05G1049700.v1.1 MD10G1056800.v1.1 MD17G1201200.v1.1
prunus_persica	Prupe.3G077000_v2.0.a1 Prupe.8G075000_v2.0.a1 Prupe.8G075000_v2.0.a1
pyrus_communis	pycom05g04150 pycom10g04370 pycom17g20500 pycom17g20510
rosa_chinensis	RchiOBHm_Chr2g0137091 RchiOBHm_Chr5g0034081 RchiOBHm_Chr5g0057671 RchiOBHm_Chr6g0269491
rosa_laevigata	RLG00000019607
rosa_multiflora	Rmu_sc0001374.1_g000006 Rmu_sc0008218.1_g000001 Rmu_ssc0000291.1_g000035
rosa_roxburghii	Rroxscaffold_1G00027300 Rroxscaffold_2G00107660 Rroxscaffold_7G00198680
rosa_rugosa	Rorug02G0174600 Rorug02G0338100 Rorug02G0338200 Rorug06G0048600
rosa_samantha	Rh1CG066900 Rh1DG071800 Rh2BG227900 Rh2CG280100 Rh6AG168500 Rh6BG173900 Rh6CG168200 Rh6DG160200
rosa_wichuraiana	Rw2G031680 Rw6G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	157, 626
AccBSI	CCGCTC	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	376
AciI	CCGC	3 cut(s)	12, 22, 533
AclWI	GGATC	3 cut(s)	66, 383, 396
AcoI	YGGCCR	2 cut(s)	3, 201
AcsI	RAATTY	1 cut(s)	238
AfaI	GTAC	3 cut(s)	184, 307, 482
AgsI	TTSAA	4 cut(s)	79, 280, 464, 592
AhdI	GACNNNNNGTC	1 cut(s)	41
AjiI	CACGTC	1 cut(s)	38
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
AloI	GAACNNNNNNTCC	2 cut(s)	492, 524
AluBI	AGCT	5 cut(s)	123, 251, 326, 566, 584
AluI	AGCT	5 cut(s)	123, 251, 326, 566, 584
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	4 cut(s)	57, 521, 562, 598
AlwI	GGATC	3 cut(s)	66, 383, 396
Ama87I	CYCGRG	1 cut(s)	761
AoxI	GGCC	2 cut(s)	3, 201
ApeKI	GCWGC	2 cut(s)	674, 677
ApoI	RAATTY	1 cut(s)	238
AspLEI	GCGC	3 cut(s)	33, 65, 86
AvaI	CYCGRG	1 cut(s)	761
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	388
BanII	GRGCYC	2 cut(s)	253, 714
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	2 cut(s)	661, 664
BccI	CCATC	4 cut(s)	108, 202, 271, 409
BceAI	ACGGC	1 cut(s)	188
BciVI	GTATCC	1 cut(s)	763
BcoDI	GTCTC	4 cut(s)	57, 521, 562, 598
BfaI	CTAG	1 cut(s)	641
BfuAI	ACCTGC	2 cut(s)	157, 626
BfuI	GTATCC	1 cut(s)	763
BisI	GCNGC	3 cut(s)	12, 675, 678
BlsI	GCNGC	3 cut(s)	13, 676, 679
BmcAI	AGTACT	1 cut(s)	482
BmeRI	GACNNNNNGTC	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	761
BmgBI	CACGTC	1 cut(s)	38
BmiI	GGNNCC	5 cut(s)	358, 390, 420, 441, 502
BmsI	GCATC	6 cut(s)	18, 56, 95, 442, 586, 610
BsaJI	CCNNGG	2 cut(s)	544, 615
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
BseDI	CCNNGG	2 cut(s)	544, 615
BseGI	GGATG	2 cut(s)	95, 625
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	2 cut(s)	661, 664
BsgI	GTGCAG	2 cut(s)	663, 668
BshFI	GGCC	2 cut(s)	5, 203
BsiHKAI	GWGCWC	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	761
BsmAI	GTCTC	4 cut(s)	57, 521, 562, 598
BsmBI	CGTCTC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	5, 203
BsoBI	CYCGRG	1 cut(s)	761
Bsp1286I	GDGCHC	2 cut(s)	253, 714
Bsp143I	GATC	3 cut(s)	71, 388, 727
BspACI	CCGC	3 cut(s)	12, 22, 533
BspANI	GGCC	2 cut(s)	5, 203
BspLI	GGNNCC	5 cut(s)	358, 390, 420, 441, 502
BspMI	ACCTGC	2 cut(s)	157, 626
BspPI	GGATC	3 cut(s)	66, 383, 396
BsrBI	CCGCTC	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	544, 615
BssMI	GATC	3 cut(s)	71, 388, 727
BssT1I	CCWWGG	2 cut(s)	544, 615
Bst4CI	ACNGT	2 cut(s)	349, 577
BstC8I	GCNNGC	3 cut(s)	121, 312, 625
BstF5I	GGATG	2 cut(s)	95, 625
BstHHI	GCGC	3 cut(s)	33, 65, 86
BstKTI	GATC	3 cut(s)	74, 391, 730
BstMAI	GTCTC	4 cut(s)	57, 521, 562, 598
BstMBI	GATC	3 cut(s)	71, 388, 727
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 30, 125
BstV1I	GCAGC	2 cut(s)	661, 664
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuI	GTATCC	1 cut(s)	763
BsuRI	GGCC	2 cut(s)	5, 203
BtrI	CACGTC	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	95, 625
BtsI	GCAGTG	2 cut(s)	6, 726
BtsIMutI	CAGTG	2 cut(s)	6, 726
BveI	ACCTGC	2 cut(s)	157, 626
Cac8I	GCNNGC	3 cut(s)	121, 312, 625
CfoI	GCGC	3 cut(s)	33, 65, 86
CseI	GACGC	2 cut(s)	353, 387
Csp6I	GTAC	3 cut(s)	183, 306, 481
CviAII	CATG	1 cut(s)	195
CviQI	GTAC	3 cut(s)	183, 306, 481
DpnI	GATC	3 cut(s)	73, 390, 729
DpnII	GATC	3 cut(s)	71, 388, 727
DriI	GACNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	2 cut(s)	3, 201
Eam1105I	GACNNNNNGTC	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	251
Eco130I	CCWWGG	2 cut(s)	544, 615
Eco24I	GRGCYC	2 cut(s)	253, 714
Eco32I	GATATC	1 cut(s)	768
Eco53kI	GAGCTC	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	761
EcoICRI	GAGCTC	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	768
EcoT14I	CCWWGG	2 cut(s)	544, 615
EcoT38I	GRGCYC	2 cut(s)	253, 714
ErhI	CCWWGG	2 cut(s)	544, 615
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	1 cut(s)	198
FaiI	YATR	5 cut(s)	92, 196, 424, 690, 716
FatI	CATG	1 cut(s)	194
FblI	GTMKAC	1 cut(s)	376
Fnu4HI	GCNGC	3 cut(s)	12, 675, 678
FokI	GGATG	2 cut(s)	82, 632
FriOI	GRGCYC	2 cut(s)	253, 714
Fsp4HI	GCNGC	3 cut(s)	12, 675, 678
FspBI	CTAG	1 cut(s)	641
GlaI	GCGC	3 cut(s)	32, 64, 85
GluI	GCNGC	3 cut(s)	12, 675, 678
HaeIII	GGCC	2 cut(s)	5, 203
HgaI	GACGC	2 cut(s)	353, 387
HhaI	GCGC	3 cut(s)	33, 65, 86
Hin1II	CATG	1 cut(s)	198
Hin6I	GCGC	3 cut(s)	31, 63, 84
HinP1I	GCGC	3 cut(s)	31, 63, 84
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HindIII	AAGCTT	1 cut(s)	121
HinfI	GANTC	1 cut(s)	654
Hpy166II	GTNNAC	2 cut(s)	377, 469
Hpy188I	TCNGA	2 cut(s)	244, 369
Hpy188III	TCNNGA	3 cut(s)	641, 761, 763
Hpy8I	GTNNAC	2 cut(s)	377, 469
Hpy99I	CGWCG	1 cut(s)	39
HpyAV	CCTTC	3 cut(s)	206, 239, 701
HpyCH4III	ACNGT	2 cut(s)	349, 577
HpyCH4IV	ACGT	2 cut(s)	37, 319
HpyCH4V	TGCA	4 cut(s)	599, 635, 649, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 30, 125
HpySE526I	ACGT	2 cut(s)	37, 319
Hsp92II	CATG	1 cut(s)	198
HspAI	GCGC	3 cut(s)	31, 63, 84
Kzo9I	GATC	3 cut(s)	71, 388, 727
LmnI	GCTCC	4 cut(s)	24, 248, 445, 500
LpnPI	CCDG	7 cut(s)	138, 162, 296, 324, 594, 609, 621
Lsp1109I	GCAGC	2 cut(s)	661, 664
LweI	GCATC	6 cut(s)	18, 56, 95, 442, 586, 610
MaeI	CTAG	1 cut(s)	641
MaeII	ACGT	2 cut(s)	37, 319
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	3 cut(s)	73, 390, 729
MbiI	CCGCTC	1 cut(s)	24
MboI	GATC	3 cut(s)	71, 388, 727
MboII	GAAGA	1 cut(s)	424
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	2 cut(s)	253, 714
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	238, 495, 630
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	6 cut(s)	66, 379, 529, 778, 816, 821
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	719
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	3 cut(s)	11, 30, 125
NdeII	GATC	3 cut(s)	71, 388, 727
NlaIII	CATG	1 cut(s)	198
NlaIV	GGNNCC	5 cut(s)	358, 390, 420, 441, 502
PaeR7I	CTCGAG	1 cut(s)	761
PfeI	GAWTC	1 cut(s)	654
PkrI	GCNGC	3 cut(s)	13, 676, 679
Psp124BI	GAGCTC	1 cut(s)	253
PspN4I	GGNNCC	5 cut(s)	358, 390, 420, 441, 502
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	3 cut(s)	184, 307, 482
RsaNI	GTAC	3 cut(s)	183, 306, 481
RseI	CAYNNNNRTG	1 cut(s)	719
SacI	GAGCTC	1 cut(s)	253
SatI	GCNGC	3 cut(s)	12, 675, 678
Sau3AI	GATC	3 cut(s)	71, 388, 727
ScaI	AGTACT	1 cut(s)	482
SduI	GDGCHC	2 cut(s)	253, 714
SfaNI	GCATC	6 cut(s)	18, 56, 95, 442, 586, 610
Sfr274I	CTCGAG	1 cut(s)	761
SlaI	CTCGAG	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	719
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
Sse9I	AATT	3 cut(s)	238, 495, 630
SsiI	CCGC	3 cut(s)	12, 22, 533
SspMI	CTAG	1 cut(s)	641
SstI	GAGCTC	1 cut(s)	253
StyI	CCWWGG	2 cut(s)	544, 615
TaaI	ACNGT	2 cut(s)	349, 577
TaiI	ACGT	2 cut(s)	40, 322
TaqI	TCGA	3 cut(s)	26, 253, 762
TasI	AATT	3 cut(s)	238, 495, 630
TatI	WGTACW	1 cut(s)	480
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	654
TscAI	CASTG	2 cut(s)	13, 726
TseI	GCWGC	2 cut(s)	674, 677
TspDTI	ATGAA	3 cut(s)	425, 536, 710
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	2 cut(s)	13, 726
XapI	RAATTY	1 cut(s)	238
XbaI	TCTAGA	1 cut(s)	640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XhoI	CTCGAG	1 cut(s)	761
XmiI	GTMKAC	1 cut(s)	376
XspI	CTAG	1 cut(s)	641
ZrmI	AGTACT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.