Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002754

Physical Location & Seq

Genomic Coordinates Reverse (-)

18923875 .. 18925400

Gene Structure 1526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g20510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCTCAAGGTTAAGCAGTTGATTCATTCTCAATCCACAACTAGTCAGCTTCAGCAAATTCAATCTAAGAAGCCCAATGATGCTCTAGCCCAAGACCTCATTACAGACTTTCCAGATTTTGCCACATTTTTTCTGCTCAAACGTCCTCATCAAAGAGCGAAGAATTTTGCCCAAACACAAAAGGAAATGAAGATGGTTCCATACAAGATTGTTAAAGCTCCAAATGGAGAAGCATGGGTTGAAGTCAACTCATGTGTTGCTAAGCTCCAAATGGAGAAAGTCAACTATAACTCATGTATTGCTGTGATGGAGGGCAAGAATCCCAAGGTTATCAAGAACTCTGAAGGAGCTCGGACCACACCATCAGTAGTTGCCATGAACCAGAAGGGAGAACTTCTTGTTGGTACTCCAGCAAAACGTCAGGCTGTGACGAACCCAACGAACACAGTTTCTGGAACCAAGCGTCTGATTGGGAGACACTTTAACGATGCCCAAACACAAAAGGAAATGAAGATGGTTCCATACAAGATTGTTAAAGCTCCAAATGGAGAAGCATGGGTTGAAGTCGATGGACAGCAGTACGCTCCACGCCAGATTGGAGCTTTTGTTCTGACAAAGATTCATTCTCAAGCCACAGCCAGTCAGCTTCTTGCCACATTTTTCCCGCTCAAACGTCCTCATCAGCCAAACTCACCAACGAATCTTGATCCTACTCAGCTACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko05152 map03018 map04212 map05152

Pfam Domains

Protein Families

HSP70

Protein Analysis

242

Amino Acids

26.89

Weight (kDa)

9.89

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37910 AT4G37910 AT5G09590
fragaria_vesca	FvH4_2g11170
malus_domestica	MD05G1049700.v1.1 MD10G1056800.v1.1 MD17G1201200.v1.1
prunus_persica	Prupe.3G077000_v2.0.a1 Prupe.8G075000_v2.0.a1 Prupe.8G075000_v2.0.a1
pyrus_communis	pycom05g04150 pycom10g04370 pycom17g20500 pycom17g20510
rosa_chinensis	RchiOBHm_Chr2g0137091 RchiOBHm_Chr5g0034081 RchiOBHm_Chr5g0057671 RchiOBHm_Chr6g0269491
rosa_laevigata	RLG00000019607
rosa_multiflora	Rmu_sc0001374.1_g000006 Rmu_sc0008218.1_g000001 Rmu_ssc0000291.1_g000035
rosa_roxburghii	Rroxscaffold_1G00027300 Rroxscaffold_2G00107660 Rroxscaffold_7G00198680
rosa_rugosa	Rorug02G0174600 Rorug02G0338100 Rorug02G0338200 Rorug06G0048600
rosa_samantha	Rh1CG066900 Rh1DG071800 Rh2BG227900 Rh2CG280100 Rh6AG168500 Rh6BG173900 Rh6CG168200 Rh6DG160200
rosa_wichuraiana	Rw2G031680 Rw6G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	667
AciI	CCGC	1 cut(s)	665
AclWI	GGATC	1 cut(s)	701
AcsI	RAATTY	2 cut(s)	57, 163
AcuI	CTGAAG	2 cut(s)	35, 363
AfaI	GTAC	2 cut(s)	406, 581
AgsI	TTSAA	3 cut(s)	62, 242, 563
AhlI	ACTAGT	1 cut(s)	41
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AloI	GAACNNNNNNTCC	2 cut(s)	591, 623
AluBI	AGCT	8 cut(s)	49, 218, 265, 350, 539, 602, 646, 718
AluI	AGCT	8 cut(s)	49, 218, 265, 350, 539, 602, 646, 718
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	1 cut(s)	701
AlwNI	CAGNNNCTG	1 cut(s)	452
ApoI	RAATTY	2 cut(s)	57, 163
AspS9I	GGNCC	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	684
AvaII	GGWCC	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	352
Bbv12I	GWGCWC	1 cut(s)	352
BccI	CCATC	5 cut(s)	187, 301, 370, 508, 563
BcoDI	GTCTC	1 cut(s)	469
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	2 cut(s)	42, 86
BlpI	GCTNAGC	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	354
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	3 cut(s)	198, 457, 519
BmsI	GCATC	2 cut(s)	70, 478
BpmI	CTGGAG	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	612
BsaJI	CCNNGG	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bse1I	ACTGG	1 cut(s)	639
BseDI	CCNNGG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	639
BsiHKAI	GWGCWC	1 cut(s)	352
BsmAI	GTCTC	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	1 cut(s)	706
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	665
BspLI	GGNNCC	3 cut(s)	198, 457, 519
BspPI	GGATC	1 cut(s)	701
BsrBI	CCGCTC	1 cut(s)	667
BsrI	ACTGG	1 cut(s)	639
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	1 cut(s)	706
BssT1I	CCWWGG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	448
BstDEI	CTNAG	3 cut(s)	66, 261, 714
BstKTI	GATC	1 cut(s)	709
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	1 cut(s)	706
CaiI	CAGNNNCTG	1 cut(s)	452
Cfr13I	GGNCC	1 cut(s)	354
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	405, 580
CviAII	CATG	5 cut(s)	234, 252, 294, 376, 555
CviQI	GTAC	2 cut(s)	405, 580
DdeI	CTNAG	3 cut(s)	66, 261, 714
DpnI	GATC	1 cut(s)	708
DpnII	GATC	1 cut(s)	706
Ecl136II	GAGCTC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	350
Eco57I	CTGAAG	2 cut(s)	35, 363
EcoICRI	GAGCTC	1 cut(s)	350
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	5 cut(s)	237, 255, 297, 379, 558
FaiI	YATR	8 cut(s)	202, 235, 253, 288, 295, 377, 523, 556
FatI	CATG	5 cut(s)	233, 251, 293, 375, 554
FauI	CCCGC	1 cut(s)	672
FriOI	GRGCYC	1 cut(s)	352
FspBI	CTAG	2 cut(s)	42, 86
GsuI	CTGGAG	1 cut(s)	393
HgaI	GACGC	1 cut(s)	452
Hin1II	CATG	5 cut(s)	237, 255, 297, 379, 558
HincII	GTYRAC	2 cut(s)	247, 283
HindII	GTYRAC	2 cut(s)	247, 283
HinfI	GANTC	4 cut(s)	22, 319, 619, 700
HphI	GGTGA	1 cut(s)	684
Hpy166II	GTNNAC	2 cut(s)	247, 283
Hpy188I	TCNGA	4 cut(s)	343, 354, 468, 612
Hpy188III	TCNNGA	4 cut(s)	113, 334, 453, 704
Hpy8I	GTNNAC	2 cut(s)	247, 283
HpyAV	CCTTC	2 cut(s)	338, 379
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	3 cut(s)	142, 418, 673
HpyF3I	CTNAG	3 cut(s)	66, 261, 714
HpySE526I	ACGT	3 cut(s)	142, 418, 673
Hsp92II	CATG	5 cut(s)	237, 255, 297, 379, 558
Kzo9I	GATC	1 cut(s)	706
LmnI	GCTCC	6 cut(s)	223, 270, 347, 544, 589, 599
LpnPI	CCDG	7 cut(s)	126, 395, 407, 423, 438, 605, 652
LweI	GCATC	2 cut(s)	70, 478
MaeI	CTAG	2 cut(s)	42, 86
MaeII	ACGT	3 cut(s)	142, 418, 673
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	1 cut(s)	708
MbiI	CCGCTC	1 cut(s)	667
MboI	GATC	1 cut(s)	706
MboII	GAAGA	3 cut(s)	172, 202, 523
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	2 cut(s)	57, 163
MnlI	CCTC	4 cut(s)	107, 156, 304, 687
MseI	TTAA	5 cut(s)	12, 213, 483, 534, 724
NdeII	GATC	1 cut(s)	706
NlaIII	CATG	5 cut(s)	237, 255, 297, 379, 558
NlaIV	GGNNCC	3 cut(s)	198, 457, 519
NmuCI	GTSAC	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	437
PfeI	GAWTC	4 cut(s)	22, 319, 619, 700
Psp124BI	GAGCTC	1 cut(s)	352
PspN4I	GGNNCC	3 cut(s)	198, 457, 519
PspPI	GGNCC	1 cut(s)	354
PstNI	CAGNNNCTG	1 cut(s)	452
RsaI	GTAC	2 cut(s)	406, 581
RsaNI	GTAC	2 cut(s)	405, 580
SacI	GAGCTC	1 cut(s)	352
SaqAI	TTAA	5 cut(s)	12, 213, 483, 534, 724
Sau3AI	GATC	1 cut(s)	706
Sau96I	GGNCC	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	352
SfaNI	GCATC	2 cut(s)	70, 478
SinI	GGWCC	1 cut(s)	354
SmlI	CTYRAG	2 cut(s)	5, 627
SmoI	CTYRAG	2 cut(s)	5, 627
SpeI	ACTAGT	1 cut(s)	41
Sse9I	AATT	2 cut(s)	57, 163
SsiI	CCGC	1 cut(s)	665
SspMI	CTAG	2 cut(s)	42, 86
SstI	GAGCTC	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	3 cut(s)	145, 421, 676
TaqI	TCGA	1 cut(s)	567
TasI	AATT	2 cut(s)	57, 163
TfiI	GAWTC	4 cut(s)	22, 319, 619, 700
Tru1I	TTAA	5 cut(s)	12, 213, 483, 534, 724
Tru9I	TTAA	5 cut(s)	12, 213, 483, 534, 724
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	5 cut(s)	14, 203, 392, 524, 611
VpaK11BI	GGWCC	1 cut(s)	354
XapI	RAATTY	2 cut(s)	57, 163
XspI	CTAG	2 cut(s)	42, 86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.