Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002754

Physical Location & Seq

Genomic Coordinates Forward (+)

44317497 .. 44321254

Gene Structure 3758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00198680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2031 bp

ATGGCCACCGCTGCGTTGCTCCGATCTCTGCGACGTCGTGACCTCGCTTCGGCCCCTCTTTATGCCTACCGATCTTTCACTAGTACTGCCAAGTCTTCGCATTTGGGTAACAATTGGACAAGTGTGGCAAGACATTTCAGTTCCAAACCTGCTGGGAGTGATATTATTGGGATTGACTTGGGTACGACCAACTCATGTGTATCTGTAATGGAGGGAAAGAACCCCAAAGTTATTGAGAATGCTGAAGGAGCACGGACAACACCATCAGTAGTTGCCTTCAATCAGAAAGGAGAGCTACTTGTTGGTACTCCAGCAAAACGTCAAGCTGTCACAAACCCAACAAACACTGTTTTTGGAACCAAGCGTCTGATTGGTAGACGTTTTGATGATCCTCAGACACAAAAAGAAATGAAGATGGTTCCGTACAAGATAGTCAAAGCTTCAAATGGAGATGCATGGGTTGAAGTCAATGGACAGCAGTATTCCCCAAGCCAGATTGGAGCCTTTGTTCTTACAAAGATGAAGGAAACTGCAGAGGCATACCTTGGAAAGAGTGTCTCAAAAGCCGTGATTACTGTTCCAGCCTATTTCAATGATGCCCAGAGGCAGGCAACAAAGGATGCCGGTAGAATTGCAGGCCTAGATGTACAGAGAATCATAAATGAGCCAACTGCTGCTGCACTTTCCTATGGTATGAACAACAAGGAAGGTCTAATAGCAGTGTTTGATCTCGGTGGTGGAACGTTTGATGTATCCATTCTGGAGATATCCAATGGTGTTTTTGAGGTGAAAGCAACAAATGGTGATACATTTTTGGGAGGAGAGGATTTTGACAATGCTTTGCTGGACTTTTTAGTGAGTGAGTTCAAGAGGAGTGAGAGTATTGATCTTTCAAAAGATAGGCTAGCTTTGCAGAGGCTTAGGGAGGCAGCTGAGAAGGCCAAGATTGAACTTTCGTCAACATCTCAAACTGAGATAAACCTGCCCTTCATCACAGCTGATTCTTCAGGTGCTAAACATCTGAACATTACGCTGACCAGATCGAAATTTGAGAGCCTGGTGAATCACTTGATTGAGAGGACAAGGGCCCCGTGCAAGAATTGTTTGAAGGATGCCAACACCTCTATTAAGGATGTTGATGAGGTCCTTCTAGTAGGAGGGATGACTCGCGTTCCCAAAGTTCAACAGGTGGTTACAGAAATATTTGGTAAAAGCCCAAGCAAAGGAGTAAACCCTGATGAGGCAGTTGCTATGGGAGCTGCAATCCAAGGAGGTATCCTTCGTGGTGATGTCAAAGAGTTGCTTCTTCTCGATGTTACTCCTCTATCTCTGGGTATTGAGACATTGGGTGGCATCTTTACCAGATTGATTACCAAGAACACGACAATTCCAACAAAGAAGAGCCAGGTCTTTTCCACAGCAGCTGATAACCAAACCCAGGTTGGCATCAAGGTACTACAGGGTGAACGTGAAATGGCTTCTGACAACAAACTCCTTGGAGAGTTTGAGCTTGTAGGTATTCCTCCAGCACCAAGGGGCATGCCTCAGATTGAAGTCACTTTTGATATTGATGCCAACGGTATTGTTAACGTTTCTGCCAAGGACAAGGCCACTGGCAAAGAGCAAAATGTTACCATCACTTCATCTGGTGGACTTACGCCAGATGAAATTGACCGGATGGTCAAGGAAGCAGAGCTGCATGCTCAGAAGGATCAGGAAAGGAAAGCCCTCATTGATATCAAGAACAGTGCCGACACAACCATCTACAGTATTGAGAAGAGCTTGAATGAGTACCGAGACAAGGTTCCAAGTGAGGTTGCTAAAGAAATTGAGGATGCAATTGCAGATTTGAGAACGGCCACCACAGGCGATAGTGTTGATGAAATCAAGGCAAAACTTGATGCTGCTAACAAAGCTGTGTCGAAGATAGGAGAGCATATGGCCGGTGGTTCTGGCGGCAACTCATCATCTGGAGGTTCACAGGGTGGTGACCAAGCTCCCGAGGCAGATTATGAAGAGGTGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko05152 map03018 map04212 map05152

Pfam Domains

Protein Families

HSP70

Protein Analysis

676

Amino Acids

72.55

Weight (kDa)

5.83

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	55 - 647	9.9e-277	Hsp70 protein
MreB_Mbl	PF06723	184 - 421	1.7e-10	MreB/Mbl protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37910 AT4G37910 AT5G09590
fragaria_vesca	FvH4_2g11170
malus_domestica	MD05G1049700.v1.1 MD10G1056800.v1.1 MD17G1201200.v1.1
prunus_persica	Prupe.3G077000_v2.0.a1 Prupe.8G075000_v2.0.a1 Prupe.8G075000_v2.0.a1
pyrus_communis	pycom05g04150 pycom10g04370 pycom17g20500 pycom17g20510
rosa_chinensis	RchiOBHm_Chr2g0137091 RchiOBHm_Chr5g0034081 RchiOBHm_Chr5g0057671 RchiOBHm_Chr6g0269491
rosa_laevigata	RLG00000019607
rosa_multiflora	Rmu_sc0001374.1_g000006 Rmu_sc0008218.1_g000001 Rmu_ssc0000291.1_g000035
rosa_roxburghii	Rroxscaffold_1G00027300 Rroxscaffold_2G00107660 Rroxscaffold_7G00198680
rosa_rugosa	Rorug02G0174600 Rorug02G0338100 Rorug02G0338200 Rorug06G0048600
rosa_samantha	Rh1CG066900 Rh1DG071800 Rh2BG227900 Rh2CG280100 Rh6AG168500 Rh6BG173900 Rh6CG168200 Rh6DG160200
rosa_wichuraiana	Rw2G031680 Rw6G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1679
AatII	GACGTC	1 cut(s)	37
Acc36I	ACCTGC	2 cut(s)	157, 990
AccI	GTMKAC	1 cut(s)	376
AccII	CGCG	1 cut(s)	1170
AciI	CCGC	2 cut(s)	9, 1956
AclI	AACGTT	2 cut(s)	743, 1590
AclWI	GGATC	2 cut(s)	383, 1719
AcoI	YGGCCR	3 cut(s)	3, 1857, 1941
AcsI	RAATTY	1 cut(s)	1046
AcuI	CTGAAG	2 cut(s)	264, 990
AcyI	GRCGYC	1 cut(s)	34
AdeI	CACNNNGTG	1 cut(s)	1985
AfaI	GTAC	7 cut(s)	85, 184, 307, 425, 648, 1455, 1793
AfiI	CCNNNNNNNGG	6 cut(s)	49, 607, 1223, 1240, 1438, 1801
AhlI	ACTAGT	1 cut(s)	80
AjnI	CCWGG	3 cut(s)	1056, 1404, 1437
AloI	GAACNNNNNNTCC	2 cut(s)	492, 524
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	3 cut(s)	562, 1334, 1791
AlwI	GGATC	2 cut(s)	383, 1719
AlwNI	CAGNNNCTG	1 cut(s)	1424
Ama87I	CYCGRG	1 cut(s)	2000
AoxI	GGCC	8 cut(s)	3, 51, 637, 939, 1086, 1608, 1857, 1941
ApaI	GGGCCC	1 cut(s)	1090
ApeKI	GCWGC	8 cut(s)	11, 674, 677, 929, 1259, 1421, 1696, 1904
ApoI	RAATTY	1 cut(s)	1046
AspS9I	GGNCC	4 cut(s)	52, 1086, 1087, 1144
AsuHPI	GGTGA	6 cut(s)	799, 815, 1072, 1298, 1475, 2000
AsuNHI	GCTAGC	1 cut(s)	904
AvaI	CYCGRG	1 cut(s)	2000
AvaII	GGWCC	1 cut(s)	1144
BaeGI	GKGCMC	1 cut(s)	1090
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	1090
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	7 cut(s)	661, 664, 941, 1246, 1433, 1683, 1891
BccI	CCATC	5 cut(s)	271, 409, 1643, 1672, 1769
BceAI	ACGGC	2 cut(s)	551, 1872
BciT130I	CCWGG	3 cut(s)	1058, 1406, 1439
BciVI	GTATCC	2 cut(s)	763, 1286
BcoDI	GTCTC	3 cut(s)	562, 1334, 1791
BcuI	ACTAGT	1 cut(s)	80
BfaI	CTAG	4 cut(s)	81, 641, 905, 1151
BfmI	CTRYAG	3 cut(s)	531, 1457, 1765
BfuAI	ACCTGC	2 cut(s)	157, 990
BfuI	GTATCC	2 cut(s)	763, 1286
BisI	GCNGC	9 cut(s)	12, 675, 678, 930, 1260, 1422, 1697, 1905, 1957
BlsI	GCNGC	9 cut(s)	13, 676, 679, 931, 1261, 1423, 1698, 1906, 1958
BmcAI	AGTACT	1 cut(s)	85
Bme1390I	CCNGG	3 cut(s)	1058, 1406, 1439
Bme18I	GGWCC	1 cut(s)	1144
BmeT110I	CYCGRG	1 cut(s)	2000
BmgT120I	GGNCC	4 cut(s)	52, 1086, 1087, 1144
BmiI	GGNNCC	7 cut(s)	54, 358, 420, 502, 1088, 1089, 1806
BmrFI	CCNGG	3 cut(s)	1058, 1406, 1439
BmsI	GCATC	9 cut(s)	442, 586, 610, 1102, 1362, 1455, 1561, 1825, 1891
BmtI	GCTAGC	1 cut(s)	908
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	4 cut(s)	294, 782, 1509, 1992
Bpu10I	CCTNAGC	1 cut(s)	920
BsaHI	GRCGYC	1 cut(s)	34
BsaJI	CCNNGG	7 cut(s)	544, 1267, 1437, 1495, 1532, 1599, 2001
BsaWI	WCCGGW	1 cut(s)	1674
BsaXI	ACNNNNNCTCC	4 cut(s)	492, 522, 865, 895
Bsc4I	CCNNNNNNNGG	6 cut(s)	49, 607, 1223, 1240, 1438, 1801
Bse118I	RCCGGY	2 cut(s)	623, 1943
Bse1I	ACTGG	1 cut(s)	1618
BseBI	CCWGG	3 cut(s)	1058, 1406, 1439
BseDI	CCNNGG	7 cut(s)	544, 1267, 1437, 1495, 1532, 1599, 2001
BseGI	GGATG	6 cut(s)	625, 1117, 1138, 1167, 1683, 1840
BseLI	CCNNNNNNNGG	6 cut(s)	49, 607, 1223, 1240, 1438, 1801
BseMII	CTCAG	5 cut(s)	407, 924, 963, 1559, 1718
BseNI	ACTGG	1 cut(s)	1618
BseRI	GAGGAG	3 cut(s)	834, 886, 1311
BseSI	GKGCMC	1 cut(s)	1090
BseXI	GCAGC	7 cut(s)	661, 664, 941, 1246, 1433, 1683, 1891
BseYI	CCCAGC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	663
Bsh1236I	CGCG	1 cut(s)	1170
BshFI	GGCC	8 cut(s)	5, 53, 639, 941, 1088, 1610, 1859, 1943
BsiHKAI	GWGCWC	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	2000
BsiSI	CCGG	3 cut(s)	624, 1675, 1944
BslI	CCNNNNNNNGG	6 cut(s)	49, 607, 1223, 1240, 1438, 1801
BsmAI	GTCTC	3 cut(s)	562, 1334, 1791
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	8 cut(s)	5, 53, 639, 941, 1088, 1610, 1859, 1943
BsoBI	CYCGRG	1 cut(s)	2000
Bsp120I	GGGCCC	1 cut(s)	1086
Bsp1286I	GDGCHC	2 cut(s)	253, 1090
Bsp1407I	TGTACA	1 cut(s)	646
Bsp143I	GATC	7 cut(s)	23, 71, 388, 727, 886, 1040, 1711
BspACI	CCGC	2 cut(s)	9, 1956
BspANI	GGCC	8 cut(s)	5, 53, 639, 941, 1088, 1610, 1859, 1943
BspCNI	CTCAG	5 cut(s)	406, 925, 964, 1558, 1717
BspFNI	CGCG	1 cut(s)	1170
BspLI	GGNNCC	7 cut(s)	54, 358, 420, 502, 1088, 1089, 1806
BspMAI	CTGCAG	1 cut(s)	535
BspMI	ACCTGC	2 cut(s)	157, 990
BspOI	GCTAGC	1 cut(s)	908
BspPI	GGATC	2 cut(s)	383, 1719
BspQI	GCTCTTC	2 cut(s)	1394, 1772
BsrFI	RCCGGY	2 cut(s)	623, 1943
BsrGI	TGTACA	1 cut(s)	646
BsrI	ACTGG	1 cut(s)	1618
BssAI	RCCGGY	2 cut(s)	623, 1943
BssECI	CCNNGG	7 cut(s)	544, 1267, 1437, 1495, 1532, 1599, 2001
BssMI	GATC	7 cut(s)	23, 71, 388, 727, 886, 1040, 1711
BssNI	GRCGYC	1 cut(s)	34
BssT1I	CCWWGG	5 cut(s)	544, 1267, 1495, 1532, 1599
Bst2UI	CCWGG	3 cut(s)	1058, 1406, 1439
Bst4CI	ACNGT	5 cut(s)	349, 577, 1580, 1748, 1769
Bst6I	CTCTTC	3 cut(s)	1394, 1772, 2010
BstACI	GRCGYC	1 cut(s)	34
BstAUI	TGTACA	1 cut(s)	646
BstC8I	GCNNGC	5 cut(s)	609, 637, 906, 1541, 1701
BstDEI	CTNAG	6 cut(s)	393, 920, 933, 972, 1545, 1704
BstEII	GGTNACC	1 cut(s)	1988
BstF5I	GGATG	6 cut(s)	625, 1117, 1138, 1167, 1683, 1840
BstFNI	CGCG	1 cut(s)	1170
BstKTI	GATC	7 cut(s)	26, 74, 391, 730, 889, 1043, 1714
BstMAI	GTCTC	3 cut(s)	562, 1334, 1791
BstMBI	GATC	7 cut(s)	23, 71, 388, 727, 886, 1040, 1711
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 248, 910, 938, 1256, 1913, 2003
BstNI	CCWGG	3 cut(s)	1058, 1406, 1439
BstNSI	RCATGY	2 cut(s)	1543, 1703
BstPI	GGTNACC	1 cut(s)	1988
BstSCI	CCNGG	3 cut(s)	1056, 1404, 1437
BstSFI	CTRYAG	3 cut(s)	531, 1457, 1765
BstSLI	GKGCMC	1 cut(s)	1090
BstUI	CGCG	1 cut(s)	1170
BstV1I	GCAGC	7 cut(s)	661, 664, 941, 1246, 1433, 1683, 1891
BstV2I	GAAGAC	1 cut(s)	87
BsuI	GTATCC	2 cut(s)	763, 1286
BsuRI	GGCC	8 cut(s)	5, 53, 639, 941, 1088, 1610, 1859, 1943
BtsCI	GGATG	6 cut(s)	625, 1117, 1138, 1167, 1683, 1840
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	4 cut(s)	345, 726, 1611, 1753
BveI	ACCTGC	2 cut(s)	157, 990
Cac8I	GCNNGC	5 cut(s)	609, 637, 906, 1541, 1701
CaiI	CAGNNNCTG	1 cut(s)	1424
Cfr10I	RCCGGY	2 cut(s)	623, 1943
Cfr13I	GGNCC	4 cut(s)	52, 1086, 1087, 1144
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	7 cut(s)	84, 183, 306, 424, 647, 1454, 1792
CviAII	CATG	4 cut(s)	195, 456, 1540, 1700
CviQI	GTAC	7 cut(s)	84, 183, 306, 424, 647, 1454, 1792
DdeI	CTNAG	6 cut(s)	393, 920, 933, 972, 1545, 1704
DpnI	GATC	7 cut(s)	25, 73, 390, 729, 888, 1042, 1713
DpnII	GATC	7 cut(s)	23, 71, 388, 727, 886, 1040, 1711
DraIII	CACNNNGTG	1 cut(s)	1985
DrdI	GACNNNNNNGTC	1 cut(s)	1679
DseDI	GACNNNNNNGTC	1 cut(s)	1679
EaeI	YGGCCR	3 cut(s)	3, 1857, 1941
Eam1104I	CTCTTC	3 cut(s)	1394, 1772, 2010
EarI	CTCTTC	3 cut(s)	1394, 1772, 2010
Eco130I	CCWWGG	5 cut(s)	544, 1267, 1495, 1532, 1599
Eco147I	AGGCCT	1 cut(s)	639
Eco24I	GRGCYC	1 cut(s)	1090
Eco32I	GATATC	2 cut(s)	768, 1738
Eco47I	GGWCC	1 cut(s)	1144
Eco57I	CTGAAG	2 cut(s)	264, 990
Eco88I	CYCGRG	1 cut(s)	2000
Eco91I	GGTNACC	1 cut(s)	1988
EcoO109I	RGGNCCY	3 cut(s)	1086, 1087, 1144
EcoO65I	GGTNACC	1 cut(s)	1988
EcoRII	CCWGG	3 cut(s)	1056, 1404, 1437
EcoRV	GATATC	2 cut(s)	768, 1738
EcoT14I	CCWWGG	5 cut(s)	544, 1267, 1495, 1532, 1599
EcoT22I	ATGCAT	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	1090
ErhI	CCWWGG	5 cut(s)	544, 1267, 1495, 1532, 1599
FaeI	CATG	4 cut(s)	198, 459, 1543, 1703
FalI	AAGNNNNNCTT	2 cut(s)	1287, 1319
FatI	CATG	4 cut(s)	194, 455, 1539, 1699
FauNDI	CATATG	1 cut(s)	1938
FblI	GTMKAC	1 cut(s)	376
Fnu4HI	GCNGC	9 cut(s)	12, 675, 678, 930, 1260, 1422, 1697, 1905, 1957
FokI	GGATG	6 cut(s)	632, 1124, 1145, 1174, 1690, 1847
FriOI	GRGCYC	1 cut(s)	1090
Fsp4HI	GCNGC	9 cut(s)	12, 675, 678, 930, 1260, 1422, 1697, 1905, 1957
FspBI	CTAG	4 cut(s)	81, 641, 905, 1151
GluI	GCNGC	9 cut(s)	12, 675, 678, 930, 1260, 1422, 1697, 1905, 1957
GsaI	CCCAGC	1 cut(s)	156
GsuI	CTGGAG	4 cut(s)	294, 782, 1509, 1992
HaeIII	GGCC	8 cut(s)	5, 53, 639, 941, 1088, 1610, 1859, 1943
HapII	CCGG	3 cut(s)	624, 1675, 1944
HgaI	GACGC	1 cut(s)	353
Hin1I	GRCGYC	1 cut(s)	34
Hin1II	CATG	4 cut(s)	198, 459, 1543, 1703
HincII	GTYRAC	2 cut(s)	960, 1588
HindII	GTYRAC	2 cut(s)	960, 1588
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	4 cut(s)	654, 1001, 1063, 1165
HpaI	GTTAAC	1 cut(s)	1588
HpaII	CCGG	3 cut(s)	624, 1675, 1944
HphI	GGTGA	6 cut(s)	799, 815, 1072, 1298, 1475, 2000
Hpy166II	GTNNAC	7 cut(s)	377, 960, 1231, 1466, 1588, 1652, 1979
Hpy188I	TCNGA	8 cut(s)	23, 285, 369, 396, 1023, 1483, 1548, 1707
Hpy188III	TCNNGA	8 cut(s)	38, 761, 868, 1310, 1715, 1741, 1971, 2000
Hpy8I	GTNNAC	7 cut(s)	377, 960, 1231, 1466, 1588, 1652, 1979
Hpy99I	CGWCG	2 cut(s)	36, 39
HpyCH4III	ACNGT	5 cut(s)	349, 577, 1580, 1748, 1769
HpyCH4IV	ACGT	6 cut(s)	34, 319, 379, 743, 1468, 1590
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 248, 910, 938, 1256, 1913, 2003
HpyF3I	CTNAG	6 cut(s)	393, 920, 933, 972, 1545, 1704
HpySE526I	ACGT	6 cut(s)	34, 319, 379, 743, 1468, 1590
Hsp92I	GRCGYC	1 cut(s)	34
Hsp92II	CATG	4 cut(s)	198, 459, 1543, 1703
KspAI	GTTAAC	1 cut(s)	1588
Kzo9I	GATC	7 cut(s)	23, 71, 388, 727, 886, 1040, 1711
LguI	GCTCTTC	2 cut(s)	1394, 1772
LmnI	GCTCC	5 cut(s)	24, 248, 500, 1256, 2002
Lsp1109I	GCAGC	7 cut(s)	661, 664, 941, 1246, 1433, 1683, 1891
LweI	GCATC	9 cut(s)	442, 586, 610, 1102, 1362, 1455, 1561, 1825, 1891
MaeI	CTAG	4 cut(s)	81, 641, 905, 1151
MaeII	ACGT	6 cut(s)	34, 319, 379, 743, 1468, 1590
MaeIII	GTNAC	8 cut(s)	38, 107, 328, 1192, 1315, 1555, 1630, 1988
MalI	GATC	7 cut(s)	25, 73, 390, 729, 888, 1042, 1713
MboI	GATC	7 cut(s)	23, 71, 388, 727, 886, 1040, 1711
MboII	GAAGA	8 cut(s)	87, 424, 996, 1298, 1411, 1789, 1936, 2027
MfeI	CAATTG	2 cut(s)	112, 1839
MhlI	GDGCHC	2 cut(s)	253, 1090
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	112, 630, 1046, 1099, 1386, 1668, 1827, 1839
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	1159
MmeI	TCCRAC	1 cut(s)	1415
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	457
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	1128, 1587
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	4 cut(s)	11, 932, 998, 1424
MspI	CCGG	3 cut(s)	624, 1675, 1944
MspR9I	CCNGG	3 cut(s)	1058, 1406, 1439
MunI	CAATTG	2 cut(s)	112, 1839
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	3 cut(s)	1058, 1406, 1439
MvnI	CGCG	1 cut(s)	1170
MwoI	GCNNNNNNNGC	7 cut(s)	11, 248, 910, 938, 1256, 1913, 2003
NdeI	CATATG	1 cut(s)	1938
NdeII	GATC	7 cut(s)	23, 71, 388, 727, 886, 1040, 1711
NheI	GCTAGC	1 cut(s)	904
NlaIII	CATG	4 cut(s)	198, 459, 1543, 1703
NlaIV	GGNNCC	7 cut(s)	54, 358, 420, 502, 1088, 1089, 1806
NmuCI	GTSAC	4 cut(s)	38, 328, 1555, 1988
NsiI	ATGCAT	1 cut(s)	457
NspI	RCATGY	2 cut(s)	1543, 1703
PaeI	GCATGC	2 cut(s)	1543, 1703
PceI	AGGCCT	1 cut(s)	639
PciSI	GCTCTTC	2 cut(s)	1394, 1772
PctI	GAATGC	1 cut(s)	244
PfeI	GAWTC	3 cut(s)	654, 1001, 1063
PkrI	GCNGC	9 cut(s)	13, 676, 679, 931, 1261, 1423, 1698, 1906, 1958
PleI	GAGTC	1 cut(s)	1159
PpsI	GAGTC	1 cut(s)	1159
PpuMI	RGGWCCY	1 cut(s)	1144
Psp1406I	AACGTT	2 cut(s)	743, 1590
Psp5II	RGGWCCY	1 cut(s)	1144
Psp6I	CCWGG	3 cut(s)	1056, 1404, 1437
PspEI	GGTNACC	1 cut(s)	1988
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	3 cut(s)	1056, 1404, 1437
PspN4I	GGNNCC	7 cut(s)	54, 358, 420, 502, 1088, 1089, 1806
PspOMI	GGGCCC	1 cut(s)	1086
PspPI	GGNCC	4 cut(s)	52, 1086, 1087, 1144
PspPPI	RGGWCCY	1 cut(s)	1144
PstI	CTGCAG	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	1424
PvuII	CAGCTG	3 cut(s)	932, 998, 1424
RsaI	GTAC	7 cut(s)	85, 184, 307, 425, 648, 1455, 1793
RsaNI	GTAC	7 cut(s)	84, 183, 306, 424, 647, 1454, 1792
SapI	GCTCTTC	2 cut(s)	1394, 1772
SaqAI	TTAA	2 cut(s)	1128, 1587
SatI	GCNGC	9 cut(s)	12, 675, 678, 930, 1260, 1422, 1697, 1905, 1957
Sau3AI	GATC	7 cut(s)	23, 71, 388, 727, 886, 1040, 1711
Sau96I	GGNCC	4 cut(s)	52, 1086, 1087, 1144
ScaI	AGTACT	1 cut(s)	85
SchI	GAGTC	1 cut(s)	1159
ScrFI	CCNGG	3 cut(s)	1058, 1406, 1439
SduI	GDGCHC	2 cut(s)	253, 1090
SfaNI	GCATC	9 cut(s)	442, 586, 610, 1102, 1362, 1455, 1561, 1825, 1891
SfcI	CTRYAG	3 cut(s)	531, 1457, 1765
SinI	GGWCC	1 cut(s)	1144
SpeI	ACTAGT	1 cut(s)	80
SphI	GCATGC	2 cut(s)	1543, 1703
Sse9I	AATT	8 cut(s)	112, 630, 1046, 1099, 1386, 1668, 1827, 1839
SseBI	AGGCCT	1 cut(s)	639
SsiI	CCGC	2 cut(s)	9, 1956
SspI	AATATT	1 cut(s)	1203
SspMI	CTAG	4 cut(s)	81, 641, 905, 1151
StuI	AGGCCT	1 cut(s)	639
StyD4I	CCNGG	3 cut(s)	1056, 1404, 1437
StyI	CCWWGG	5 cut(s)	544, 1267, 1495, 1532, 1599
TaaI	ACNGT	5 cut(s)	349, 577, 1580, 1748, 1769
TaiI	ACGT	6 cut(s)	37, 322, 382, 746, 1471, 1593
TaqI	TCGA	3 cut(s)	1043, 1311, 1922
TasI	AATT	8 cut(s)	112, 630, 1046, 1099, 1386, 1668, 1827, 1839
TatI	WGTACW	2 cut(s)	83, 646
TauI	GCSGC	1 cut(s)	1959
TfiI	GAWTC	3 cut(s)	654, 1001, 1063
Tru1I	TTAA	2 cut(s)	1128, 1587
Tru9I	TTAA	2 cut(s)	1128, 1587
TscAI	CASTG	4 cut(s)	352, 726, 1618, 1753
TseFI	GTSAC	4 cut(s)	38, 328, 1555, 1988
TseI	GCWGC	8 cut(s)	11, 674, 677, 929, 1259, 1421, 1696, 1904
Tsp45I	GTSAC	4 cut(s)	38, 328, 1555, 1988
TspDTI	ATGAA	8 cut(s)	425, 536, 710, 979, 1632, 1680, 1896, 2028
TspGWI	ACGGA	2 cut(s)	268, 411
TspRI	CASTG	4 cut(s)	352, 726, 1618, 1753
VpaK11BI	GGWCC	1 cut(s)	1144
XapI	RAATTY	1 cut(s)	1046
XceI	RCATGY	2 cut(s)	1543, 1703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1439
XmiI	GTMKAC	1 cut(s)	376
XspI	CTAG	4 cut(s)	81, 641, 905, 1151
ZraI	GACGTC	1 cut(s)	35
ZrmI	AGTACT	1 cut(s)	85
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.