Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008218.1

Orthogroup ID

OG0002754

Physical Location & Seq

Genomic Coordinates Forward (+)

491 .. 1769

Gene Structure 1279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008218.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggagggaaatcctgttgctaaaaccatgaagaatgtttcaagaggcatggctgttcttacagttccatttaccatgggctttccaaaggctgtattttgttactgggttacctccaacttgttttcactcggatatggaattgtaattaagaatcctttcgtgaagaagacactgggtcttcctcagctgcctaccccggctccacagccacaaggatcacaacaatctgcattctcactgttttcacaaatgaaacagctggctgcagccccagagcccgcctcatcaaccgttcaaccagcaaagattcaagaccggagaacatcatcgacatcagatctcagtcaaaggattaaaagtttagagaaaaaagtaaagggaaaaaagagaaacaagaagaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

135

Amino Acids

14.81

Weight (kDa)

10.66

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37910 AT4G37910 AT5G09590
fragaria_vesca	FvH4_2g11170
malus_domestica	MD05G1049700.v1.1 MD10G1056800.v1.1 MD17G1201200.v1.1
prunus_persica	Prupe.3G077000_v2.0.a1 Prupe.8G075000_v2.0.a1 Prupe.8G075000_v2.0.a1
pyrus_communis	pycom05g04150 pycom10g04370 pycom17g20500 pycom17g20510
rosa_chinensis	RchiOBHm_Chr2g0137091 RchiOBHm_Chr5g0034081 RchiOBHm_Chr5g0057671 RchiOBHm_Chr6g0269491
rosa_laevigata	RLG00000019607
rosa_multiflora	Rmu_sc0001374.1_g000006 Rmu_sc0008218.1_g000001 Rmu_ssc0000291.1_g000035
rosa_roxburghii	Rroxscaffold_1G00027300 Rroxscaffold_2G00107660 Rroxscaffold_7G00198680
rosa_rugosa	Rorug02G0174600 Rorug02G0338100 Rorug02G0338200 Rorug06G0048600
rosa_samantha	Rh1CG066900 Rh1DG071800 Rh2BG227900 Rh2CG280100 Rh6AG168500 Rh6BG173900 Rh6CG168200 Rh6DG160200
rosa_wichuraiana	Rw2G031680 Rw6G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	42, 299, 314
AhdI	GACNNNNNGTC	1 cut(s)	177
AluBI	AGCT	2 cut(s)	190, 262
AluI	AGCT	2 cut(s)	190, 262
AlwI	GGATC	1 cut(s)	226
ApeKI	GCWGC	3 cut(s)	190, 266, 269
Asp700I	GAANNNNTTC	1 cut(s)	158
AsuC2I	CCSGG	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	282
BbsI	GAAGAC	2 cut(s)	173, 176
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	177, 253, 281
BcnI	CCSGG	1 cut(s)	200
BfmI	CTRYAG	1 cut(s)	267
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	3 cut(s)	191, 267, 270
BlsI	GCNGC	3 cut(s)	192, 268, 271
Bme1390I	CCNGG	1 cut(s)	200
BmeRI	GACNNNNNGTC	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	200
BmrI	ACTGGG	2 cut(s)	115, 185
BmuI	ACTGGG	2 cut(s)	115, 185
BpiI	GAAGAC	2 cut(s)	173, 176
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
Bpu10I	CCTNAGC	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	75, 198
BsaWI	WCCGGW	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bse1I	ACTGG	2 cut(s)	110, 180
BseDI	CCNNGG	2 cut(s)	75, 198
BseMII	CTCAG	2 cut(s)	200, 358
BseNI	ACTGG	2 cut(s)	110, 180
BseXI	GCAGC	3 cut(s)	177, 253, 281
BsiSI	CCGG	2 cut(s)	200, 319
BsmI	GAATGC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	218, 340
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	1 cut(s)	282
BspCNI	CTCAG	2 cut(s)	199, 357
BspLI	GGNNCC	1 cut(s)	204
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	110, 180
BssECI	CCNNGG	2 cut(s)	75, 198
BssMI	GATC	2 cut(s)	218, 340
BssT1I	CCWWGG	1 cut(s)	75
Bst4CI	ACNGT	3 cut(s)	64, 243, 295
Bst6I	CTCTTC	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	264, 282
BstDEI	CTNAG	2 cut(s)	186, 344
BstDSI	CCRYGG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	109
BstKTI	GATC	2 cut(s)	221, 343
BstMBI	GATC	2 cut(s)	218, 340
BstPI	GGTNACC	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	3 cut(s)	177, 253, 281
BstV2I	GAAGAC	2 cut(s)	173, 176
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BtgI	CCRYGG	1 cut(s)	75
BtsIMutI	CAGTG	2 cut(s)	173, 239
Cac8I	GCNNGC	2 cut(s)	264, 282
CviAII	CATG	3 cut(s)	28, 49, 76
DdeI	CTNAG	2 cut(s)	186, 344
DpnI	GATC	2 cut(s)	220, 342
DpnII	GATC	2 cut(s)	218, 340
DriI	GACNNNNNGTC	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	395
Eam1105I	GACNNNNNGTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	282
Eco91I	GGTNACC	1 cut(s)	109
EcoO65I	GGTNACC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	3 cut(s)	31, 52, 79
FaiI	YATR	4 cut(s)	29, 50, 77, 138
FatI	CATG	3 cut(s)	27, 48, 75
FauI	CCCGC	1 cut(s)	289
Fnu4HI	GCNGC	3 cut(s)	191, 267, 270
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	3 cut(s)	191, 267, 270
GluI	GCNGC	3 cut(s)	191, 267, 270
HapII	CCGG	2 cut(s)	200, 319
Hin1II	CATG	3 cut(s)	31, 52, 79
HinfI	GANTC	2 cut(s)	154, 310
HpaII	CCGG	2 cut(s)	200, 319
Hpy188I	TCNGA	2 cut(s)	134, 340
Hpy188III	TCNNGA	3 cut(s)	42, 163, 314
HpyCH4III	ACNGT	3 cut(s)	64, 243, 295
HpyCH4V	TGCA	2 cut(s)	233, 269
HpyF3I	CTNAG	2 cut(s)	186, 344
Hsp92II	CATG	3 cut(s)	31, 52, 79
Kzo9I	GATC	2 cut(s)	218, 340
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	8 cut(s)	27, 91, 161, 213, 248, 288, 315, 332
Lsp1109I	GCAGC	3 cut(s)	177, 253, 281
MaeIII	GTNAC	2 cut(s)	101, 109
MalI	GATC	2 cut(s)	220, 342
MboI	GATC	2 cut(s)	218, 340
MboII	GAAGA	4 cut(s)	43, 173, 178, 181
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	2 cut(s)	141, 147
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	5 cut(s)	38, 124, 195, 295, 396
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	2 cut(s)	150, 357
MspA1I	CMGCKG	2 cut(s)	190, 262
MspI	CCGG	2 cut(s)	200, 319
MspR9I	CCNGG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	200
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	2 cut(s)	218, 340
NlaIII	CATG	3 cut(s)	31, 52, 79
NlaIV	GGNNCC	1 cut(s)	204
PctI	GAATGC	1 cut(s)	233
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	2 cut(s)	154, 310
PkrI	GCNGC	3 cut(s)	192, 268, 271
PspEI	GGTNACC	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	204
PstI	CTGCAG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	340
PvuII	CAGCTG	2 cut(s)	190, 262
SaqAI	TTAA	2 cut(s)	150, 357
SatI	GCNGC	3 cut(s)	191, 267, 270
Sau3AI	GATC	2 cut(s)	218, 340
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	4 cut(s)	116, 192, 264, 407
SfcI	CTRYAG	1 cut(s)	267
Sse9I	AATT	2 cut(s)	141, 147
SsiI	CCGC	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	3 cut(s)	64, 243, 295
TaqI	TCGA	1 cut(s)	332
TasI	AATT	2 cut(s)	141, 147
TfiI	GAWTC	2 cut(s)	154, 310
Tru1I	TTAA	2 cut(s)	150, 357
Tru9I	TTAA	2 cut(s)	150, 357
TscAI	CASTG	2 cut(s)	180, 246
TseI	GCWGC	3 cut(s)	190, 266, 269
TspDTI	ATGAA	2 cut(s)	44, 269
TspRI	CASTG	2 cut(s)	180, 246
XmnI	GAANNNNTTC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.