RchiOBHm_Chr5g0057671
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002754
Physical Location & Seq
Forward (+)
61664276 .. 61667591
3316 bp
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UTR
Exon/CDS
Intron
PRQ33443

Sequence Viewer

Length: 255 bp
ATGAAGAATGTTTCAAGAGGCATGGATGTTCTTACAGTTCCATTTACCATGGGCTTTCCAAAGATTCCCAAAGTTGTTGAGAATTCTGAGGGTGCTCGGACCACACCATCAGTAGTTGCCTTCAATCAGAAAGGAGAGCTACGAATTGGTACTCCAGCAAAATATCAAGCGGTTACCAACCCATCAAAGAGTCAGGATACTAGTCCTTCCACGAGATCCTTAGCTTTAAGCTGTTACAATGAAGGGGAAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03018 ko04212 ko05152 map03018 map04212 map05152
Pfam Domains
Protein Families
HSP70

Protein Analysis

84

Amino Acids

9.05

Weight (kDa)

9.3

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 23 - 63 3.9e-11 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 170
AclWI GGATC 1 cut(s) 210
AcsI RAATTY 1 cut(s) 82
AfaI GTAC 1 cut(s) 151
AgsI TTSAA 2 cut(s) 15, 124
AhlI ACTAGT 1 cut(s) 200
AluBI AGCT 3 cut(s) 139, 224, 231
AluI AGCT 3 cut(s) 139, 224, 231
Alw21I GWGCWC 1 cut(s) 97
AlwI GGATC 1 cut(s) 210
ApoI RAATTY 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 99
AvaII GGWCC 1 cut(s) 99
BauI CACGAG 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 97
BccI CCATC 2 cut(s) 115, 190
BciVI GTATCC 1 cut(s) 190
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 1 cut(s) 201
BfuI GTATCC 1 cut(s) 190
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 1 cut(s) 215
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 79
BspPI GGATC 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 1 cut(s) 215
BssSI CACGAG 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 87, 220
BstDSI CCRYGG 1 cut(s) 48
BstEII GGTNACC 1 cut(s) 172
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 1 cut(s) 218
BstMBI GATC 1 cut(s) 215
BstPI GGTNACC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BsuI GTATCC 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 150
CviAII CATG 2 cut(s) 22, 49
CviJI RGCY 4 cut(s) 54, 139, 224, 231
CviKI_1 RGCY 4 cut(s) 54, 139, 224, 231
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 2 cut(s) 87, 220
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 99
Eco91I GGTNACC 1 cut(s) 172
EcoO65I GGTNACC 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 25, 52
FaiI YATR 2 cut(s) 23, 50
FatI CATG 2 cut(s) 21, 48
FokI GGATG 1 cut(s) 38
FspBI CTAG 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 138
Hin1II CATG 2 cut(s) 25, 52
HinfI GANTC 2 cut(s) 64, 190
Hpy188I TCNGA 3 cut(s) 88, 99, 129
Hpy188III TCNNGA 2 cut(s) 15, 194
HpyAV CCTTC 3 cut(s) 130, 216, 236
HpyCH4III ACNGT 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 87, 220
Hsp92II CATG 2 cut(s) 25, 52
Kzo9I GATC 1 cut(s) 215
LpnPI CCDG 2 cut(s) 168, 179
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 172, 233
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 2 cut(s) 82, 144
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 2 cut(s) 11, 82
MseI TTAA 1 cut(s) 227
NcoI CCATGG 1 cut(s) 48
NdeII GATC 1 cut(s) 215
NlaIII CATG 2 cut(s) 25, 52
PfeI GAWTC 1 cut(s) 64
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
PspEI GGTNACC 1 cut(s) 172
PspPI GGNCC 1 cut(s) 99
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 227
Sau3AI GATC 1 cut(s) 215
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 1 cut(s) 199
SduI GDGCHC 1 cut(s) 97
SetI ASST 3 cut(s) 141, 226, 233
SinI GGWCC 1 cut(s) 99
SpeI ACTAGT 1 cut(s) 200
Sse9I AATT 2 cut(s) 82, 144
SsiI CCGC 1 cut(s) 170
SspMI CTAG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 37
TasI AATT 2 cut(s) 82, 144
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TspDTI ATGAA 2 cut(s) 17, 255
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 1 cut(s) 82
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.