Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002754

Physical Location & Seq

Genomic Coordinates Reverse (-)

22288962 .. 22309001

Gene Structure 20040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG227900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGATGTTTTGAAGAAGTACTTGAGTACTATGGATTCATCAAGAAAAGTCAAGTCCCGGTACCCAATTCAAGATCCGCTCTTTCCAAGACAGCATAGTCGAGAAAATGTAAGGAAACCTCTGGGTATGGCAGTGGCCAGAGTAGGGGTTAAGCCACAGAAGAAGAACTTTGTGGCGGATGGGAGAAACCGAAAACCACTGGGTGAGATTGGTTATGGAGAGCACCTGTGGATTCCACTTACTCCTAGAATGGGGACATGCTCAGTGAATAAGCTAAACATCTCAGCAAGGAAAATTTATGTTCTAGGACACTTTAGGATGCCGGAAAGGGATCACTATCACATTTGCTTTAGTTATAGGCATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009628 GO:0010212 GO:0010332 GO:0040008 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

122

Amino Acids

14.21

Weight (kDa)

10.36

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37910 AT4G37910 AT5G09590
fragaria_vesca	FvH4_2g11170
malus_domestica	MD05G1049700.v1.1 MD10G1056800.v1.1 MD17G1201200.v1.1
prunus_persica	Prupe.3G077000_v2.0.a1 Prupe.8G075000_v2.0.a1 Prupe.8G075000_v2.0.a1
pyrus_communis	pycom05g04150 pycom10g04370 pycom17g20500 pycom17g20510
rosa_chinensis	RchiOBHm_Chr2g0137091 RchiOBHm_Chr5g0034081 RchiOBHm_Chr5g0057671 RchiOBHm_Chr6g0269491
rosa_laevigata	RLG00000019607
rosa_multiflora	Rmu_sc0001374.1_g000006 Rmu_sc0008218.1_g000001 Rmu_ssc0000291.1_g000035
rosa_roxburghii	Rroxscaffold_1G00027300 Rroxscaffold_2G00107660 Rroxscaffold_7G00198680
rosa_rugosa	Rorug02G0174600 Rorug02G0338100 Rorug02G0338200 Rorug06G0048600
rosa_samantha	Rh1CG066900 Rh1DG071800 Rh2BG227900 Rh2CG280100 Rh6AG168500 Rh6BG173900 Rh6CG168200 Rh6DG160200
rosa_wichuraiana	Rw2G031680 Rw6G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	96
Acc65I	GGTACC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	60
AccBSI	CCGCTC	1 cut(s)	79
AciI	CCGC	2 cut(s)	77, 176
AclWI	GGATC	2 cut(s)	68, 339
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	294
AdeI	CACNNNGTG	1 cut(s)	203
AfaI	GTAC	3 cut(s)	20, 28, 62
AfiI	CCNNNNNNNGG	2 cut(s)	144, 251
AgsI	TTSAA	2 cut(s)	13, 71
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
Alw21I	GWGCWC	1 cut(s)	225
AlwI	GGATC	2 cut(s)	68, 339
AoxI	GGCC	1 cut(s)	135
ApoI	RAATTY	1 cut(s)	294
Asp718I	GGTACC	1 cut(s)	60
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	137
BanI	GGYRCC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	225
BccI	CCATC	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	58
BfaI	CTAG	2 cut(s)	246, 305
BmcAI	AGTACT	2 cut(s)	20, 28
Bme1390I	CCNGG	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	58
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	309
BmuI	ACTGGG	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	58
BsaBI	GATNNNNATC	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 251
Bse1I	ACTGG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	336
BseGI	GGATG	3 cut(s)	10, 184, 324
BseJI	GATNNNNATC	1 cut(s)	336
BseLI	CCNNNNNNNGG	2 cut(s)	144, 251
BseMII	CTCAG	2 cut(s)	276, 297
BseNI	ACTGG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	2 cut(s)	58, 323
BslFI	GGGAC	2 cut(s)	40, 268
BslI	CCNNNNNNNGG	2 cut(s)	144, 251
BsmFI	GGGAC	2 cut(s)	40, 268
BsnI	GGCC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	73, 331
BspACI	CCGC	2 cut(s)	77, 176
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	2 cut(s)	275, 296
BspLI	GGNNCC	1 cut(s)	62
BspPI	GGATC	2 cut(s)	68, 339
BspT107I	GGYRCC	1 cut(s)	60
BsrBI	CCGCTC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	204
BssMI	GATC	2 cut(s)	73, 331
BstDEI	CTNAG	2 cut(s)	262, 283
BstF5I	GGATG	3 cut(s)	10, 184, 324
BstKTI	GATC	2 cut(s)	76, 334
BstMBI	GATC	2 cut(s)	73, 331
BstNSI	RCATGY	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	3 cut(s)	10, 184, 324
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	3 cut(s)	138, 197, 270
Csp6I	GTAC	3 cut(s)	19, 27, 61
CviAII	CATG	2 cut(s)	258, 362
CviJI	RGCY	3 cut(s)	137, 154, 274
CviKI_1	RGCY	3 cut(s)	137, 154, 274
CviQI	GTAC	3 cut(s)	19, 27, 61
DdeI	CTNAG	2 cut(s)	262, 283
DpnI	GATC	2 cut(s)	75, 333
DpnII	GATC	2 cut(s)	73, 331
DraIII	CACNNNGTG	1 cut(s)	203
DrdI	GACNNNNNNGTC	1 cut(s)	96
DseDI	GACNNNNNNGTC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	191
FaeI	CATG	2 cut(s)	261, 365
FaiI	YATR	8 cut(s)	32, 96, 128, 216, 259, 300, 357, 363
FalI	AAGNNNNNCTT	3 cut(s)	37, 152, 184
FaqI	GGGAC	2 cut(s)	40, 268
FatI	CATG	2 cut(s)	257, 361
FokI	GGATG	3 cut(s)	17, 191, 331
FspBI	CTAG	2 cut(s)	246, 305
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	2 cut(s)	58, 323
Hin1II	CATG	2 cut(s)	261, 365
HinfI	GANTC	2 cut(s)	35, 232
HpaII	CCGG	2 cut(s)	58, 323
HphI	GGTGA	1 cut(s)	215
Hpy188III	TCNNGA	3 cut(s)	42, 71, 101
HpyF3I	CTNAG	2 cut(s)	262, 283
Hsp92II	CATG	2 cut(s)	261, 365
KpnI	GGTACC	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	73, 331
LpnPI	CCDG	6 cut(s)	71, 107, 151, 185, 239, 336
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	2 cut(s)	246, 305
MalI	GATC	2 cut(s)	75, 333
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	2 cut(s)	73, 331
MboII	GAAGA	3 cut(s)	25, 172, 175
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	2 cut(s)	66, 294
MluNI	TGGCCA	1 cut(s)	137
MnlI	CCTC	1 cut(s)	129
Mox20I	TGGCCA	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	2 cut(s)	150, 367
Msp20I	TGGCCA	1 cut(s)	137
MspI	CCGG	2 cut(s)	58, 323
MspR9I	CCNGG	1 cut(s)	58
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	2 cut(s)	73, 331
NlaIII	CATG	2 cut(s)	261, 365
NlaIV	GGNNCC	1 cut(s)	62
NspI	RCATGY	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	35, 232
PspN4I	GGNNCC	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	3 cut(s)	20, 28, 62
RsaNI	GTAC	3 cut(s)	19, 27, 61
SaqAI	TTAA	2 cut(s)	150, 367
Sau3AI	GATC	2 cut(s)	73, 331
ScaI	AGTACT	2 cut(s)	20, 28
ScrFI	CCNGG	1 cut(s)	58
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	3 cut(s)	121, 228, 276
SfaNI	GCATC	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	2 cut(s)	66, 294
SsiI	CCGC	2 cut(s)	77, 176
SspMI	CTAG	2 cut(s)	246, 305
StyD4I	CCNGG	1 cut(s)	56
TaqI	TCGA	1 cut(s)	100
TasI	AATT	2 cut(s)	66, 294
TatI	WGTACW	2 cut(s)	18, 26
TfiI	GAWTC	2 cut(s)	35, 232
Tru1I	TTAA	2 cut(s)	150, 367
Tru9I	TTAA	2 cut(s)	150, 367
TscAI	CASTG	3 cut(s)	138, 204, 270
TspDTI	ATGAA	1 cut(s)	27
TspRI	CASTG	3 cut(s)	138, 204, 270
XapI	RAATTY	1 cut(s)	294
XceI	RCATGY	1 cut(s)	261
XspI	CTAG	2 cut(s)	246, 305
ZrmI	AGTACT	2 cut(s)	20, 28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.