Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0014834

Physical Location & Seq

Genomic Coordinates Forward (+)

10615724 .. 10616889

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g07780.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGATATGAAATTGTGGTTCAACCCATAGTTGAGGTATCCTTTGAGGGAAGGGATCCCCATTTTAAGAAAAAAAAAAGGGTAAAGTATAAAAAACTACCTCAACTATTAGTCATACCTCATCTTATGAATTTGTGCCAATGTTATACCTCTGTTAGTTTTTCTGTTAATTTATCTGTTAATAAAACACCTACCTGCATCCCCAAAACCTTCCCACGCATTCCCCCCAACCTTCATCCCCCTCACCCTTTCTTCCTCCTGCTCCCATATTCTCTGCTCAACCTCTCCCTCCAAAAACTCTCCCATCTAGAGCCCCTCGACCTCTCCGCATCGGGCAACGAGAAATGCCTCTGGATCTCCGCTGTGTTAAGCCTGAAGATTTGGCAAGACTCGGATCTCCGCTGTATCGAGTCGGTCAAGGCGCATAAGGACGCCGTGAATGCGTTGGCAGTGTCGAACGAAGGGACGTTGTACATCGGGTTAACGGAGTATCGGATCTGGGTGTGGTCCAAACCGTTCGGGGAAGACGGAGAAGACGGGAACGGGGTGAGATCTGGGTTGGGTGGTTTTGGTTTTGAGTTTAGGGAAGAAAGGGTGAAAGGGATGAAGGTTGGGGGGAGGACGGGTGGGAAGGGTTTGAGGGATGCAGGTAGGTGTCCAGAGAGAGAGAAAGAGAAGAGAGAGGCCAGAGAGAGAGAGGGTGGTGGAGGAAGGTTGGGAGGGACGGGTGGGAAGGGTTTAATTATTAAAATATATATTTATTTATATTTTAATCCAATTGGATTAGTGAGTGGTTCTCGTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

269

Amino Acids

29.97

Weight (kDa)

9.5

Isoelectric Point (pI)

28.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014834)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g07780 pycom12g13790 pycom15g04400
rosa_chinensis	RchiOBHm_Chr6g0254721
rosa_laevigata	RLG00000012597 RLG00000026348
rosa_multiflora	Rmu_sc0003880.1_g000037 Rmu_ssc0000116.1_g000020 Rmu_ssc0000357.1_g000003
rosa_roxburghii	Rroxscaffold_4G00311450
rosa_samantha	Rh2BG557500 Rh2DG003800 Rh3DG263600 Rh4BG141200 Rh5AG042400 Rh5DG042600 Rh6CG505700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	203, 638
AciI	CCGC	3 cut(s)	327, 360, 400
AclWI	GGATC	5 cut(s)	50, 63, 362, 402, 503
AcsI	RAATTY	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	432
AfaI	GTAC	1 cut(s)	473
AgsI	TTSAA	1 cut(s)	23
AlwI	GGATC	5 cut(s)	50, 63, 362, 402, 503
AoxI	GGCC	1 cut(s)	684
ApoI	RAATTY	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	507
AsuHPI	GGTGA	3 cut(s)	236, 559, 607
AvaII	GGWCC	1 cut(s)	507
BamHI	GGATCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	2 cut(s)	531, 540
BccI	CCATC	1 cut(s)	312
BceAI	ACGGC	1 cut(s)	419
BciVI	GTATCC	1 cut(s)	49
BfaI	CTAG	2 cut(s)	308, 805
BfuAI	ACCTGC	2 cut(s)	203, 638
BfuI	GTATCC	1 cut(s)	49
BglII	AGATCT	1 cut(s)	551
Bme18I	GGWCC	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	507
BmiI	GGNNCC	1 cut(s)	57
BmsI	GCATC	3 cut(s)	207, 338, 634
BpiI	GAAGAC	2 cut(s)	531, 540
BplI	GAGNNNNNCTC	1 cut(s)	781
BsaHI	GRCGYC	1 cut(s)	432
BsaXI	ACNNNNNCTCC	2 cut(s)	610, 640
BseGI	GGATG	4 cut(s)	198, 235, 609, 649
BshFI	GGCC	1 cut(s)	686
BslFI	GGGAC	2 cut(s)	478, 736
BsmFI	GGGAC	2 cut(s)	478, 736
BsmI	GAATGC	2 cut(s)	219, 445
BsnI	GGCC	1 cut(s)	686
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	5 cut(s)	55, 354, 394, 495, 551
BspACI	CCGC	3 cut(s)	327, 360, 400
BspANI	GGCC	1 cut(s)	686
BspLI	GGNNCC	1 cut(s)	57
BspMI	ACCTGC	2 cut(s)	203, 638
BspPI	GGATC	5 cut(s)	50, 63, 362, 402, 503
BsrGI	TGTACA	1 cut(s)	471
BssMI	GATC	5 cut(s)	55, 354, 394, 495, 551
BssNI	GRCGYC	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	516
Bst6I	CTCTTC	1 cut(s)	671
BstACI	GRCGYC	1 cut(s)	432
BstAUI	TGTACA	1 cut(s)	471
BstF5I	GGATG	4 cut(s)	198, 235, 609, 649
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	5 cut(s)	58, 357, 397, 498, 554
BstMBI	GATC	5 cut(s)	55, 354, 394, 495, 551
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstV2I	GAAGAC	2 cut(s)	531, 540
BstX2I	RGATCY	5 cut(s)	55, 354, 394, 495, 551
BstYI	RGATCY	5 cut(s)	55, 354, 394, 495, 551
BsuI	GTATCC	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	686
BtsCI	GGATG	4 cut(s)	198, 235, 609, 649
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	456
BveI	ACCTGC	2 cut(s)	203, 638
CfoI	GCGC	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	507
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	472
CviJI	RGCY	3 cut(s)	313, 372, 686
CviKI_1	RGCY	3 cut(s)	313, 372, 686
CviQI	GTAC	1 cut(s)	472
DpnI	GATC	5 cut(s)	57, 356, 396, 497, 553
DpnII	GATC	5 cut(s)	55, 354, 394, 495, 551
Eam1104I	CTCTTC	1 cut(s)	671
EarI	CTCTTC	1 cut(s)	671
Eco24I	GRGCYC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	507
Eco57I	CTGAAG	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	315
FaqI	GGGAC	2 cut(s)	478, 736
FokI	GGATG	4 cut(s)	185, 222, 616, 656
FriOI	GRGCYC	1 cut(s)	315
FspBI	CTAG	2 cut(s)	308, 805
GlaI	GCGC	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	686
HgaI	GACGC	1 cut(s)	440
HhaI	GCGC	1 cut(s)	424
Hin1I	GRCGYC	1 cut(s)	432
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	1 cut(s)	483
HindII	GTYRAC	1 cut(s)	483
HinfI	GANTC	2 cut(s)	389, 410
HpaI	GTTAAC	1 cut(s)	483
HphI	GGTGA	3 cut(s)	236, 559, 607
Hpy166II	GTNNAC	1 cut(s)	483
Hpy188I	TCNGA	2 cut(s)	394, 495
Hpy188III	TCNNGA	3 cut(s)	308, 352, 659
Hpy8I	GTNNAC	1 cut(s)	483
HpyAV	CCTTC	8 cut(s)	45, 220, 242, 455, 601, 625, 705, 727
HpyCH4III	ACNGT	1 cut(s)	516
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	2 cut(s)	198, 647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
HpySE526I	ACGT	1 cut(s)	467
Hsp92I	GRCGYC	1 cut(s)	432
HspAI	GCGC	1 cut(s)	422
KspAI	GTTAAC	1 cut(s)	483
Kzo9I	GATC	5 cut(s)	55, 354, 394, 495, 551
LmnI	GCTCC	1 cut(s)	267
LpnPI	CCDG	9 cut(s)	208, 272, 337, 386, 484, 540, 633, 672, 700
LweI	GCATC	3 cut(s)	207, 338, 634
MaeI	CTAG	2 cut(s)	308, 805
MaeII	ACGT	1 cut(s)	467
MalI	GATC	5 cut(s)	57, 356, 396, 497, 553
MboI	GATC	5 cut(s)	55, 354, 394, 495, 551
MboII	GAAGA	6 cut(s)	244, 388, 536, 545, 599, 688
MfeI	CAATTG	1 cut(s)	777
MflI	RGATCY	5 cut(s)	55, 354, 394, 495, 551
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	5 cut(s)	12, 130, 169, 741, 777
MlyI	GAGTC	2 cut(s)	383, 419
MseI	TTAA	8 cut(s)	66, 168, 180, 368, 482, 740, 747, 771
MspA1I	CMGCKG	2 cut(s)	362, 402
MunI	CAATTG	1 cut(s)	777
Mva1269I	GAATGC	2 cut(s)	219, 445
MwoI	GCNNNNNNNGC	1 cut(s)	440
NdeII	GATC	5 cut(s)	55, 354, 394, 495, 551
NlaIV	GGNNCC	1 cut(s)	57
PctI	GAATGC	2 cut(s)	219, 445
PleI	GAGTC	2 cut(s)	383, 418
PpsI	GAGTC	2 cut(s)	383, 418
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	507
PsuI	RGATCY	5 cut(s)	55, 354, 394, 495, 551
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SaqAI	TTAA	8 cut(s)	66, 168, 180, 368, 482, 740, 747, 771
Sau3AI	GATC	5 cut(s)	55, 354, 394, 495, 551
Sau96I	GGNCC	1 cut(s)	507
SchI	GAGTC	2 cut(s)	383, 419
SduI	GDGCHC	1 cut(s)	315
SfaNI	GCATC	3 cut(s)	207, 338, 634
SinI	GGWCC	1 cut(s)	507
Sse9I	AATT	5 cut(s)	12, 130, 169, 741, 777
SsiI	CCGC	3 cut(s)	327, 360, 400
SspMI	CTAG	2 cut(s)	308, 805
TaaI	ACNGT	1 cut(s)	516
TaiI	ACGT	1 cut(s)	470
TaqI	TCGA	3 cut(s)	318, 408, 455
TaqII	GACCGA	1 cut(s)	403
TasI	AATT	5 cut(s)	12, 130, 169, 741, 777
TatI	WGTACW	1 cut(s)	471
Tru1I	TTAA	8 cut(s)	66, 168, 180, 368, 482, 740, 747, 771
Tru9I	TTAA	8 cut(s)	66, 168, 180, 368, 482, 740, 747, 771
TscAI	CASTG	1 cut(s)	456
TspDTI	ATGAA	4 cut(s)	24, 143, 224, 620
TspGWI	ACGGA	2 cut(s)	500, 543
TspRI	CASTG	1 cut(s)	456
VpaK11BI	GGWCC	1 cut(s)	507
XapI	RAATTY	1 cut(s)	130
XbaI	TCTAGA	1 cut(s)	307
XspI	CTAG	2 cut(s)	308, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.