Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000116.1

Orthogroup ID

OG0014834

Physical Location & Seq

Genomic Coordinates Reverse (-)

103505 .. 103879

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000116.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ctgcagcaccaacctccattccaacctctccctccagacgctgccatctgtccgctcccttcagaagctcatcttccaactcgacgccccaaacctctccgtctctcgcctctgcttcatctcccaacagttagtgcttttaagttccagaccttgaagatttggcgggactccaacctccgctacgtggagtccgtcaaggcgcacgaggacgccgtgagtgcggtggcgaaggacgggaccgtctacaccgggtcggcggaccgtcggagccgggtgtgggcgagaccgcaagacgagaagcgccacgtgttggtggcgacgctggagaagcacaagtcggcggtcgtccttcgcgtctctctctggctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

124

Amino Acids

14.04

Weight (kDa)

10.16

Isoelectric Point (pI)

62.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014834)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g07780 pycom12g13790 pycom15g04400
rosa_chinensis	RchiOBHm_Chr6g0254721
rosa_laevigata	RLG00000012597 RLG00000026348
rosa_multiflora	Rmu_sc0003880.1_g000037 Rmu_ssc0000116.1_g000020 Rmu_ssc0000357.1_g000003
rosa_roxburghii	Rroxscaffold_4G00311450
rosa_samantha	Rh2BG557500 Rh2DG003800 Rh3DG263600 Rh4BG141200 Rh5AG042400 Rh5DG042600 Rh6CG505700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	1 cut(s)	357
AciI	CCGC	7 cut(s)	53, 166, 181, 224, 260, 290, 344
AcuI	CTGAAG	1 cut(s)	45
AcvI	CACGTG	1 cut(s)	310
AcyI	GRCGYC	2 cut(s)	85, 213
AfiI	CCNNNNNNNGG	3 cut(s)	187, 280, 313
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	157
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw26I	GTCTC	3 cut(s)	107, 280, 364
AlwNI	CAGNNNCTG	1 cut(s)	41
ApeKI	GCWGC	2 cut(s)	4, 41
AspLEI	GCGC	2 cut(s)	205, 306
AspS9I	GGNCC	2 cut(s)	240, 262
AsuC2I	CCSGG	2 cut(s)	253, 275
AvaII	GGWCC	2 cut(s)	240, 262
BauI	CACGAG	1 cut(s)	206
BbrPI	CACGTG	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	16, 28
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	1 cut(s)	200
BcnI	CCSGG	2 cut(s)	253, 275
BcoDI	GTCTC	3 cut(s)	107, 280, 364
BfmI	CTRYAG	2 cut(s)	2, 371
BfoI	RGCGCY	1 cut(s)	307
BisI	GCNGC	2 cut(s)	5, 42
BlsI	GCNGC	2 cut(s)	6, 43
Bme1390I	CCNGG	2 cut(s)	253, 275
Bme18I	GGWCC	2 cut(s)	240, 262
BmgT120I	GGNCC	2 cut(s)	240, 262
BmiI	GGNNCC	2 cut(s)	241, 272
BmrFI	CCNGG	2 cut(s)	253, 275
BpmI	CTGGAG	2 cut(s)	18, 347
BpuMI	CCSGG	2 cut(s)	253, 275
BsaAI	YACGTR	2 cut(s)	187, 310
BsaHI	GRCGYC	2 cut(s)	85, 213
BsaI	GGTCTC	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 280, 313
BseLI	CCNNNNNNNGG	3 cut(s)	187, 280, 313
BseXI	GCAGC	2 cut(s)	16, 28
Bsh1236I	CGCG	1 cut(s)	357
Bsh1285I	CGRYCG	1 cut(s)	348
BsiEI	CGRYCG	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	252, 274
BslFI	GGGAC	2 cut(s)	182, 253
BslI	CCNNNNNNNGG	3 cut(s)	187, 280, 313
BsmAI	GTCTC	3 cut(s)	107, 280, 364
BsmBI	CGTCTC	2 cut(s)	107, 364
BsmFI	GGGAC	2 cut(s)	182, 253
Bso31I	GGTCTC	1 cut(s)	280
BspACI	CCGC	7 cut(s)	53, 166, 181, 224, 260, 290, 344
BspFNI	CGCG	1 cut(s)	357
BspLI	GGNNCC	2 cut(s)	241, 272
BspMAI	CTGCAG	1 cut(s)	6
BspTNI	GGTCTC	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	55
BssNI	GRCGYC	2 cut(s)	85, 213
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
Bst4CI	ACNGT	3 cut(s)	130, 244, 266
BstACI	GRCGYC	2 cut(s)	85, 213
BstBAI	YACGTR	2 cut(s)	187, 310
BstFNI	CGCG	1 cut(s)	357
BstH2I	RGCGCY	1 cut(s)	307
BstHHI	GCGC	2 cut(s)	205, 306
BstMAI	GTCTC	3 cut(s)	107, 280, 364
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 331
BstSCI	CCNGG	2 cut(s)	251, 273
BstSFI	CTRYAG	2 cut(s)	2, 371
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	16, 28
CaiI	CAGNNNCTG	1 cut(s)	41
CfoI	GCGC	2 cut(s)	205, 306
Cfr13I	GGNCC	2 cut(s)	240, 262
CpoI	CGGWCCG	1 cut(s)	262
CseI	GACGC	5 cut(s)	47, 93, 221, 331, 346
CspI	CGGWCCG	1 cut(s)	262
CviJI	RGCY	3 cut(s)	68, 273, 370
CviKI_1	RGCY	3 cut(s)	68, 273, 370
DrdI	GACNNNNNNGTC	1 cut(s)	242
DseDI	GACNNNNNNGTC	1 cut(s)	242
EciI	GGCGGA	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	280
Eco47I	GGWCC	2 cut(s)	240, 262
Eco57I	CTGAAG	1 cut(s)	45
Eco72I	CACGTG	1 cut(s)	310
Esp3I	CGTCTC	2 cut(s)	107, 364
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	2 cut(s)	182, 253
FauI	CCCGC	1 cut(s)	159
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	5, 42
Fsp4HI	GCNGC	2 cut(s)	5, 42
GlaI	GCGC	2 cut(s)	204, 305
GluI	GCNGC	2 cut(s)	5, 42
GsuI	CTGGAG	2 cut(s)	18, 347
HaeII	RGCGCY	1 cut(s)	307
HapII	CCGG	2 cut(s)	252, 274
HgaI	GACGC	5 cut(s)	47, 93, 221, 331, 346
HhaI	GCGC	2 cut(s)	205, 306
Hin1I	GRCGYC	2 cut(s)	85, 213
Hin6I	GCGC	2 cut(s)	203, 304
HinP1I	GCGC	2 cut(s)	203, 304
HinfI	GANTC	2 cut(s)	170, 191
HpaII	CCGG	2 cut(s)	252, 274
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	64, 270
Hpy188III	TCNNGA	2 cut(s)	35, 148
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	3 cut(s)	87, 270, 325
HpyAV	CCTTC	3 cut(s)	69, 226, 362
HpyCH4III	ACNGT	3 cut(s)	130, 244, 266
HpyCH4IV	ACGT	2 cut(s)	186, 309
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 331
HpySE526I	ACGT	2 cut(s)	186, 309
Hsp92I	GRCGYC	2 cut(s)	85, 213
HspAI	GCGC	2 cut(s)	203, 304
LmnI	GCTCC	2 cut(s)	60, 270
LpnPI	CCDG	6 cut(s)	48, 161, 265, 287, 311, 352
Lsp1109I	GCAGC	2 cut(s)	16, 28
MaeII	ACGT	2 cut(s)	186, 309
MbiI	CCGCTC	1 cut(s)	55
MboII	GAAGA	2 cut(s)	65, 169
MlyI	GAGTC	2 cut(s)	164, 200
MmeI	TCCRAC	4 cut(s)	46, 101, 198, 248
MnlI	CCTC	7 cut(s)	24, 36, 42, 105, 120, 188, 202
MseI	TTAA	1 cut(s)	141
MspI	CCGG	2 cut(s)	252, 274
MspR9I	CCNGG	2 cut(s)	253, 275
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	221, 331
NciI	CCSGG	2 cut(s)	253, 275
NlaIV	GGNNCC	2 cut(s)	241, 272
PcsI	WCGNNNNNNNCGW	3 cut(s)	192, 213, 354
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	6, 43
PleI	GAGTC	2 cut(s)	164, 199
PmaCI	CACGTG	1 cut(s)	310
PmlI	CACGTG	1 cut(s)	310
PpsI	GAGTC	2 cut(s)	164, 199
Ppu21I	YACGTR	2 cut(s)	187, 310
PspCI	CACGTG	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	241, 272
PspPI	GGNCC	2 cut(s)	240, 262
PstI	CTGCAG	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	41
Rsr2I	CGGWCCG	1 cut(s)	262
RsrII	CGGWCCG	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	5, 42
Sau96I	GGNCC	2 cut(s)	240, 262
SchI	GAGTC	2 cut(s)	164, 200
ScrFI	CCNGG	2 cut(s)	253, 275
SetI	ASST	8 cut(s)	16, 28, 70, 97, 155, 180, 189, 312
SfcI	CTRYAG	2 cut(s)	2, 371
SinI	GGWCC	2 cut(s)	240, 262
SsiI	CCGC	7 cut(s)	53, 166, 181, 224, 260, 290, 344
StyD4I	CCNGG	2 cut(s)	251, 273
TaaI	ACNGT	3 cut(s)	130, 244, 266
TaiI	ACGT	2 cut(s)	189, 312
TaqI	TCGA	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseI	GCWGC	2 cut(s)	4, 41
TspDTI	ATGAA	1 cut(s)	107
TspGWI	ACGGA	2 cut(s)	89, 184
Van91I	CCANNNNNTGG	1 cut(s)	313
VpaK11BI	GGWCC	2 cut(s)	240, 262
XmiI	GTMKAC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.