Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0014834

Physical Location & Seq

Genomic Coordinates Forward (+)

2314411 .. 2322456

Gene Structure 8046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026348

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAACAGAAGCTATCTGTGGTTTTTATTGTTAGATATATGGGCATAGACCCTGTTGGTGTTGAGTGTGCCTACTACTGCAGTAGACGAGTCGGTGCTTTTAAGTTCCAGACCTTGAAGATTTGGCGGGACTCCAACCTCCGCTGCGTGGAGTCCGTCAAGGCGCACGAAGACGCCGTGAGCGCGGTAGCGGTGGCGAAGGACGGGACCTTCTACACCGGGTCGGTTGACAGTCAGATCTGCGTGTGGGCGAGACTGCAAGACGAGAAGCGCCACGTGTTGGTGGCGACGCTGGAGAAGCACAAGTCGGCGGTCGTCCTTCGCGTCTCTCTCTGGCCTGAACCAATCAGAAAATCAGGGGATGGCCACCAGTTAGATCACCCAAACCATTTTTTCTCTATTCTTAAACATACACATAAGCTATACGCTTTCTCTGGTGAATACATGGGATATGCGGCTTTTGAGGTATTTGACCCCAAAACCGATCTCCGCAAGCTTCCAATTGGGATTGACGGGCTTTCTTTATCCTCGTGTGCCGTTGTGGGCACCAAGATCTTGGTCACACTTCCGTTAGGAGTCAATAGGGTAAAAGTATGGATTAAAGATCTCCCGATAAAATTAAAATCCCCTGAAAAATCTGCTCGGCTTTGCCACCTCCGTCTCTTCATCCCTCATGGCTTCATTCAATTGGGAAGAAGACAGGCCTACAAGGCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

240

Amino Acids

26.99

Weight (kDa)

9.55

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	37 - 97	6.4e-07	WDR5 beta-propeller domain
NBCH_WD40	PF20426	45 - 103	5e-06	Neurobeachin beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014834)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g07780 pycom12g13790 pycom15g04400
rosa_chinensis	RchiOBHm_Chr6g0254721
rosa_laevigata	RLG00000012597 RLG00000026348
rosa_multiflora	Rmu_sc0003880.1_g000037 Rmu_ssc0000116.1_g000020 Rmu_ssc0000357.1_g000003
rosa_roxburghii	Rroxscaffold_4G00311450
rosa_samantha	Rh2BG557500 Rh2DG003800 Rh3DG263600 Rh4BG141200 Rh5AG042400 Rh5DG042600 Rh6CG505700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	545
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccI	GTMKAC	1 cut(s)	85
AccII	CGCG	2 cut(s)	185, 324
AciI	CCGC	7 cut(s)	127, 142, 185, 191, 311, 455, 490
AcoI	YGGCCR	1 cut(s)	364
AcvI	CACGTG	1 cut(s)	277
AcyI	GRCGYC	1 cut(s)	174
AfiI	CCNNNNNNNGG	2 cut(s)	148, 280
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	118, 686
AluBI	AGCT	3 cut(s)	13, 421, 496
AluI	AGCT	3 cut(s)	13, 421, 496
Alw26I	GTCTC	3 cut(s)	247, 331, 665
AoxI	GGCC	3 cut(s)	335, 364, 702
ApeKI	GCWGC	1 cut(s)	144
AspLEI	GCGC	3 cut(s)	166, 185, 273
AspS9I	GGNCC	1 cut(s)	207
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	371, 449
AvaII	GGWCC	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	548
BalI	TGGCCA	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	545
BauI	CACGAG	1 cut(s)	529
BbrPI	CACGTG	1 cut(s)	277
BbsI	GAAGAC	2 cut(s)	177, 703
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	1 cut(s)	356
BceAI	ACGGC	2 cut(s)	161, 521
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	3 cut(s)	247, 331, 665
BfmI	CTRYAG	1 cut(s)	79
BfoI	RGCGCY	1 cut(s)	274
BglI	GCCNNNNNGGC	1 cut(s)	710
BglII	AGATCT	3 cut(s)	237, 552, 604
BisI	GCNGC	2 cut(s)	145, 456
BlsI	GCNGC	2 cut(s)	146, 457
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	2 cut(s)	208, 547
BmrFI	CCNGG	1 cut(s)	220
BpiI	GAAGAC	2 cut(s)	177, 703
BpmI	CTGGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	220
BsaAI	YACGTR	1 cut(s)	277
BsaHI	GRCGYC	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 280
Bse1I	ACTGG	1 cut(s)	370
BseGI	GGATG	2 cut(s)	367, 666
BseLI	CCNNNNNNNGG	2 cut(s)	148, 280
BseNI	ACTGG	1 cut(s)	370
BseSI	GKGCMC	1 cut(s)	548
BseXI	GCAGC	1 cut(s)	131
Bsh1236I	CGCG	2 cut(s)	185, 324
Bsh1285I	CGRYCG	1 cut(s)	315
BshFI	GGCC	3 cut(s)	337, 366, 704
BshNI	GGYRCC	1 cut(s)	545
BsiEI	CGRYCG	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	2 cut(s)	143, 220
BslI	CCNNNNNNNGG	2 cut(s)	148, 280
BsmAI	GTCTC	3 cut(s)	247, 331, 665
BsmBI	CGTCTC	2 cut(s)	331, 665
BsmFI	GGGAC	2 cut(s)	143, 220
BsnI	GGCC	3 cut(s)	337, 366, 704
Bsp1286I	GDGCHC	1 cut(s)	548
Bsp143I	GATC	5 cut(s)	237, 376, 484, 552, 604
BspACI	CCGC	7 cut(s)	127, 142, 185, 191, 311, 455, 490
BspANI	GGCC	3 cut(s)	337, 366, 704
BspFNI	CGCG	2 cut(s)	185, 324
BspLI	GGNNCC	2 cut(s)	208, 547
BspMAI	CTGCAG	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	370
BssMI	GATC	5 cut(s)	237, 376, 484, 552, 604
BssNI	GRCGYC	1 cut(s)	174
BssSI	CACGAG	1 cut(s)	529
Bst2BI	CACGAG	1 cut(s)	529
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	668
BstACI	GRCGYC	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	494
BstF5I	GGATG	2 cut(s)	367, 666
BstFNI	CGCG	2 cut(s)	185, 324
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	3 cut(s)	166, 185, 273
BstKTI	GATC	5 cut(s)	240, 379, 487, 555, 607
BstMAI	GTCTC	3 cut(s)	247, 331, 665
BstMBI	GATC	5 cut(s)	237, 376, 484, 552, 604
BstMCI	CGRYCG	1 cut(s)	315
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 298, 710
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	79
BstSLI	GKGCMC	1 cut(s)	548
BstUI	CGCG	2 cut(s)	185, 324
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	2 cut(s)	177, 703
BstX2I	RGATCY	3 cut(s)	237, 552, 604
BstXI	CCANNNNNNTGG	1 cut(s)	556
BstYI	RGATCY	3 cut(s)	237, 552, 604
BsuRI	GGCC	3 cut(s)	337, 366, 704
BtsCI	GGATG	2 cut(s)	367, 666
Cac8I	GCNNGC	1 cut(s)	494
CfoI	GCGC	3 cut(s)	166, 185, 273
Cfr13I	GGNCC	1 cut(s)	207
CseI	GACGC	3 cut(s)	182, 298, 313
CviAII	CATG	2 cut(s)	445, 674
DpnI	GATC	5 cut(s)	239, 378, 486, 554, 606
DpnII	GATC	5 cut(s)	237, 376, 484, 552, 604
EaeI	YGGCCR	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	668
EarI	CTCTTC	1 cut(s)	668
Eco147I	AGGCCT	1 cut(s)	704
Eco47I	GGWCC	1 cut(s)	207
Eco72I	CACGTG	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	207
Esp3I	CGTCTC	2 cut(s)	331, 665
FaeI	CATG	2 cut(s)	448, 677
FaqI	GGGAC	2 cut(s)	143, 220
FatI	CATG	2 cut(s)	444, 673
FauI	CCCGC	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	145, 456
FokI	GGATG	2 cut(s)	374, 653
Fsp4HI	GCNGC	2 cut(s)	145, 456
GlaI	GCGC	3 cut(s)	165, 184, 272
GluI	GCNGC	2 cut(s)	145, 456
GsuI	CTGGAG	1 cut(s)	314
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	3 cut(s)	337, 366, 704
HapII	CCGG	1 cut(s)	219
HgaI	GACGC	3 cut(s)	182, 298, 313
HhaI	GCGC	3 cut(s)	166, 185, 273
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	448, 677
Hin6I	GCGC	3 cut(s)	164, 183, 271
HinP1I	GCGC	3 cut(s)	164, 183, 271
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	4 cut(s)	90, 131, 152, 576
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	2 cut(s)	371, 449
Hpy166II	GTNNAC	2 cut(s)	86, 229
Hpy188I	TCNGA	2 cut(s)	237, 350
Hpy188III	TCNNGA	2 cut(s)	109, 610
Hpy8I	GTNNAC	2 cut(s)	86, 229
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	3 cut(s)	193, 220, 329
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	2 cut(s)	81, 259
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 298, 710
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	448, 677
HspAI	GCGC	3 cut(s)	164, 183, 271
Kzo9I	GATC	5 cut(s)	237, 376, 484, 552, 604
Lsp1109I	GCAGC	1 cut(s)	131
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	5 cut(s)	239, 378, 486, 554, 606
MboI	GATC	5 cut(s)	237, 376, 484, 552, 604
MboII	GAAGA	5 cut(s)	130, 182, 655, 705, 708
MfeI	CAATTG	2 cut(s)	501, 686
MflI	RGATCY	3 cut(s)	237, 552, 604
MhlI	GDGCHC	1 cut(s)	548
MlsI	TGGCCA	1 cut(s)	366
MluCI	AATT	3 cut(s)	501, 617, 686
MluNI	TGGCCA	1 cut(s)	366
MlyI	GAGTC	4 cut(s)	99, 125, 161, 585
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	5 cut(s)	149, 457, 538, 665, 681
Mox20I	TGGCCA	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	366
MseI	TTAA	4 cut(s)	102, 405, 600, 620
Msp20I	TGGCCA	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	220
MunI	CAATTG	2 cut(s)	501, 686
MvnI	CGCG	2 cut(s)	185, 324
MwoI	GCNNNNNNNGC	3 cut(s)	182, 298, 710
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	5 cut(s)	237, 376, 484, 552, 604
NlaIII	CATG	2 cut(s)	448, 677
NlaIV	GGNNCC	2 cut(s)	208, 547
NmeAIII	GCCGAG	1 cut(s)	622
NmuCI	GTSAC	1 cut(s)	559
PceI	AGGCCT	1 cut(s)	704
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 321
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	146, 457
PleI	GAGTC	4 cut(s)	98, 125, 160, 584
PmaCI	CACGTG	1 cut(s)	277
PmlI	CACGTG	1 cut(s)	277
PpsI	GAGTC	4 cut(s)	98, 125, 160, 584
Ppu21I	YACGTR	1 cut(s)	277
PpuMI	RGGWCCY	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	207
PspCI	CACGTG	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	208, 547
PspPI	GGNCC	1 cut(s)	207
PspPPI	RGGWCCY	1 cut(s)	207
PstI	CTGCAG	1 cut(s)	83
PsuI	RGATCY	3 cut(s)	237, 552, 604
SaqAI	TTAA	4 cut(s)	102, 405, 600, 620
SatI	GCNGC	2 cut(s)	145, 456
Sau3AI	GATC	5 cut(s)	237, 376, 484, 552, 604
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	4 cut(s)	99, 125, 161, 585
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	548
SetI	ASST	9 cut(s)	15, 116, 141, 212, 279, 423, 468, 498, 657
SfcI	CTRYAG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	207
Sse9I	AATT	3 cut(s)	501, 617, 686
SseBI	AGGCCT	1 cut(s)	704
SsiI	CCGC	7 cut(s)	127, 142, 185, 191, 311, 455, 490
StuI	AGGCCT	1 cut(s)	704
StyD4I	CCNGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	1 cut(s)	279
TasI	AATT	3 cut(s)	501, 617, 686
TauI	GCSGC	1 cut(s)	458
Tru1I	TTAA	4 cut(s)	102, 405, 600, 620
Tru9I	TTAA	4 cut(s)	102, 405, 600, 620
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	2 cut(s)	655, 670
TspGWI	ACGGA	3 cut(s)	145, 558, 647
Van91I	CCANNNNNTGG	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	207
XmiI	GTMKAC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.