Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014834

Physical Location & Seq

Genomic Coordinates Reverse (-)

76795772 .. 76796560

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG557500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAGGCCTCAGGCCTCAGCTCCTCCAGTACTGCGACACCTGCAACCCAACCTCCATTCCAACCTCTCCCTCCAGACGCTGCCATCTGTCCCCTCCCTTCAGAAGCTCATCTTCCAACTCGACGCCCCAAACCTCTCCGTCTCTCACCTCTGCTTCATCTCCCAACAGTCGGTGCCATAAACTTCCAGACCTTGAAGATTTGGCGGGACTCCAACCTCCGCTGCGTAGAGTCCGTCAAGGCGCACGAGGACGCCGTGAGTGCGGTGGCGGTGGCGAAGGACGGGACCGTCTACACCGGGTCGGCGGACCGTCGAAGCCGGGTGTGGGGGAGACCGCAAGACGAGAAGCGCCACGTGTTGGTGGCGACGCTGGAGAAGCACAAGTCGGCGGTCGTCCTTCGCGTCTCTCTCTGGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

139

Amino Acids

15.14

Weight (kDa)

9.82

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	63 - 123	2.3e-07	WDR5 beta-propeller domain
WD40_Prp19	PF24814	63 - 132	7.2e-07	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014834)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g07780 pycom12g13790 pycom15g04400
rosa_chinensis	RchiOBHm_Chr6g0254721
rosa_laevigata	RLG00000012597 RLG00000026348
rosa_multiflora	Rmu_sc0003880.1_g000037 Rmu_ssc0000116.1_g000020 Rmu_ssc0000357.1_g000003
rosa_roxburghii	Rroxscaffold_4G00311450
rosa_samantha	Rh2BG557500 Rh2DG003800 Rh3DG263600 Rh4BG141200 Rh5AG042400 Rh5DG042600 Rh6CG505700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	49
AasI	GACNNNNNNGTC	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	173
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	1 cut(s)	402
AciI	CCGC	7 cut(s)	205, 220, 263, 269, 305, 335, 389
AcoI	YGGCCR	1 cut(s)	413
AcuI	CTGAAG	1 cut(s)	84
AcvI	CACGTG	1 cut(s)	355
AcyI	GRCGYC	2 cut(s)	124, 252
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	3 cut(s)	170, 325, 358
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	1 cut(s)	196
AluBI	AGCT	2 cut(s)	21, 107
AluI	AGCT	2 cut(s)	21, 107
Alw26I	GTCTC	3 cut(s)	146, 325, 409
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	3 cut(s)	6, 13, 413
ApeKI	GCWGC	2 cut(s)	80, 222
AspLEI	GCGC	2 cut(s)	244, 351
AspS9I	GGNCC	2 cut(s)	285, 307
AsuC2I	CCSGG	2 cut(s)	298, 320
AsuHPI	GGTGA	1 cut(s)	138
AvaII	GGWCC	2 cut(s)	285, 307
AxyI	CCTNAGG	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	245
BbrPI	CACGTG	1 cut(s)	355
BbvCI	CCTCAGC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	67, 209
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	2 cut(s)	239, 400
BcnI	CCSGG	2 cut(s)	298, 320
BcoDI	GTCTC	3 cut(s)	146, 325, 409
BfoI	RGCGCY	1 cut(s)	352
BfuAI	ACCTGC	1 cut(s)	49
BisI	GCNGC	2 cut(s)	81, 223
BlsI	GCNGC	2 cut(s)	82, 224
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	298, 320
Bme18I	GGWCC	2 cut(s)	285, 307
BmgT120I	GGNCC	2 cut(s)	285, 307
BmiI	GGNNCC	2 cut(s)	175, 286
BmrFI	CCNGG	2 cut(s)	298, 320
BpmI	CTGGAG	3 cut(s)	10, 57, 392
Bpu10I	CCTNAGC	1 cut(s)	17
BpuMI	CCSGG	2 cut(s)	298, 320
BsaAI	YACGTR	1 cut(s)	355
BsaHI	GRCGYC	2 cut(s)	124, 252
BsaI	GGTCTC	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 325, 358
Bse1I	ACTGG	1 cut(s)	27
Bse21I	CCTNAGG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	170, 325, 358
BseMII	CTCAG	2 cut(s)	24, 31
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	13
BseXI	GCAGC	2 cut(s)	67, 209
Bsh1236I	CGCG	1 cut(s)	402
Bsh1285I	CGRYCG	1 cut(s)	393
BshFI	GGCC	3 cut(s)	8, 15, 415
BshNI	GGYRCC	1 cut(s)	173
BsiEI	CGRYCG	1 cut(s)	393
BsiSI	CCGG	2 cut(s)	297, 319
BslFI	GGGAC	3 cut(s)	75, 221, 298
BslI	CCNNNNNNNGG	3 cut(s)	170, 325, 358
BsmAI	GTCTC	3 cut(s)	146, 325, 409
BsmBI	CGTCTC	2 cut(s)	146, 409
BsmFI	GGGAC	3 cut(s)	75, 221, 298
BsnI	GGCC	3 cut(s)	8, 15, 415
Bso31I	GGTCTC	1 cut(s)	325
BspACI	CCGC	7 cut(s)	205, 220, 263, 269, 305, 335, 389
BspANI	GGCC	3 cut(s)	8, 15, 415
BspCNI	CTCAG	2 cut(s)	23, 30
BspFNI	CGCG	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	175, 286
BspMI	ACCTGC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	27
BssNI	GRCGYC	2 cut(s)	124, 252
BssSI	CACGAG	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	245
Bst4CI	ACNGT	3 cut(s)	169, 289, 311
BstACI	GRCGYC	2 cut(s)	124, 252
BstBAI	YACGTR	1 cut(s)	355
BstDEI	CTNAG	2 cut(s)	10, 17
BstFNI	CGCG	1 cut(s)	402
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	2 cut(s)	244, 351
BstMAI	GTCTC	3 cut(s)	146, 325, 409
BstMCI	CGRYCG	1 cut(s)	393
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 260, 376
BstSCI	CCNGG	2 cut(s)	296, 318
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	2 cut(s)	67, 209
Bsu36I	CCTNAGG	1 cut(s)	10
BsuRI	GGCC	3 cut(s)	8, 15, 415
BveI	ACCTGC	1 cut(s)	49
CaiI	CAGNNNCTG	1 cut(s)	80
CfoI	GCGC	2 cut(s)	244, 351
Cfr13I	GGNCC	2 cut(s)	285, 307
CpoI	CGGWCCG	1 cut(s)	307
CseI	GACGC	5 cut(s)	86, 132, 260, 376, 391
Csp6I	GTAC	1 cut(s)	30
CspI	CGGWCCG	1 cut(s)	307
CviJI	RGCY	6 cut(s)	8, 15, 21, 107, 318, 415
CviKI_1	RGCY	6 cut(s)	8, 15, 21, 107, 318, 415
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	2 cut(s)	10, 17
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	1 cut(s)	413
EciI	GGCGGA	1 cut(s)	320
Eco147I	AGGCCT	2 cut(s)	8, 15
Eco31I	GGTCTC	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	285, 307
Eco57I	CTGAAG	1 cut(s)	84
Eco72I	CACGTG	1 cut(s)	355
Eco81I	CCTNAGG	1 cut(s)	10
Esp3I	CGTCTC	2 cut(s)	146, 409
FaiI	YATR	1 cut(s)	179
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FaqI	GGGAC	3 cut(s)	75, 221, 298
FauI	CCCGC	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	81, 223
Fsp4HI	GCNGC	2 cut(s)	81, 223
GlaI	GCGC	2 cut(s)	243, 350
GluI	GCNGC	2 cut(s)	81, 223
GsuI	CTGGAG	3 cut(s)	10, 57, 392
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	3 cut(s)	8, 15, 415
HapII	CCGG	2 cut(s)	297, 319
HgaI	GACGC	5 cut(s)	86, 132, 260, 376, 391
HhaI	GCGC	2 cut(s)	244, 351
Hin1I	GRCGYC	2 cut(s)	124, 252
Hin6I	GCGC	2 cut(s)	242, 349
HinP1I	GCGC	2 cut(s)	242, 349
HinfI	GANTC	2 cut(s)	209, 230
HpaII	CCGG	2 cut(s)	297, 319
HphI	GGTGA	1 cut(s)	138
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	2 cut(s)	74, 187
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	3 cut(s)	126, 315, 370
HpyAV	CCTTC	3 cut(s)	108, 271, 407
HpyCH4III	ACNGT	3 cut(s)	169, 289, 311
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 260, 376
HpyF3I	CTNAG	2 cut(s)	10, 17
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	2 cut(s)	124, 252
HspAI	GCGC	2 cut(s)	242, 349
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	8 cut(s)	40, 54, 87, 200, 310, 332, 356, 397
Lsp1109I	GCAGC	2 cut(s)	67, 209
MaeII	ACGT	1 cut(s)	354
MboII	GAAGA	2 cut(s)	104, 208
MlyI	GAGTC	2 cut(s)	203, 239
MmeI	TCCRAC	3 cut(s)	85, 140, 237
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	2 cut(s)	297, 319
MspR9I	CCNGG	2 cut(s)	298, 320
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	3 cut(s)	41, 260, 376
NciI	CCSGG	2 cut(s)	298, 320
NlaIV	GGNNCC	2 cut(s)	175, 286
PaqCI	CACCTGC	1 cut(s)	49
PceI	AGGCCT	2 cut(s)	8, 15
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 399
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	2 cut(s)	82, 224
PleI	GAGTC	2 cut(s)	203, 238
PmaCI	CACGTG	1 cut(s)	355
PmlI	CACGTG	1 cut(s)	355
PpsI	GAGTC	2 cut(s)	203, 238
Ppu21I	YACGTR	1 cut(s)	355
PspCI	CACGTG	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	175, 286
PspPI	GGNCC	2 cut(s)	285, 307
PstNI	CAGNNNCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
Rsr2I	CGGWCCG	1 cut(s)	307
RsrII	CGGWCCG	1 cut(s)	307
SatI	GCNGC	2 cut(s)	81, 223
Sau96I	GGNCC	2 cut(s)	285, 307
ScaI	AGTACT	1 cut(s)	31
SchI	GAGTC	2 cut(s)	203, 239
ScrFI	CCNGG	2 cut(s)	298, 320
SinI	GGWCC	2 cut(s)	285, 307
SseBI	AGGCCT	2 cut(s)	8, 15
SsiI	CCGC	7 cut(s)	205, 220, 263, 269, 305, 335, 389
StuI	AGGCCT	2 cut(s)	8, 15
StyD4I	CCNGG	2 cut(s)	296, 318
TaaI	ACNGT	3 cut(s)	169, 289, 311
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	2 cut(s)	121, 313
TatI	WGTACW	1 cut(s)	29
TseI	GCWGC	2 cut(s)	80, 222
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	2 cut(s)	128, 223
Van91I	CCANNNNNTGG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	285, 307
XmiI	GTMKAC	1 cut(s)	291
ZrmI	AGTACT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.