Rh5DG042600

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
3187542 .. 3255256
67715 bp
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UTR
Exon/CDS
Intron
Rh5DG042600.1

Sequence Viewer

Length: 489 bp
ATGCTAACCCATGTCCAACAAGGAACCCTAGCCACCTTTATCCTTCAACGACCATTTGCCACCGACATCCAAGCCGCCAACGAAACCATGGCGACCACTCAATATGCGAAATCAAATGGTTCTCTTAGCAAGAAGGCGATGCTGGCAATTTCACTAGGATCTGTTACAGTTTTCCTTCTCTTACTTACCCTTTATTGGTTGGTAAGCATGAAGATGAAAGCTGAATATGCAAAGAAGTCAAATGCTCTAAGCAAGAAGGGAAAGCTAGCAATTTCATTAGCCTCATCAGCTGTTCTCACTTTACTTTTACTAGTTTCCCTTTTGTATTGGTTCATATGGAGGAAGAGAAATGCTCAATATGCAAAGAAGTCAAATGATTCTCTTAGCAAGAAGGAAAAGCTGGCAATTTCACTAATCTATGATTCTAGGTCGAGAAATGAATCAGTTACTATTAGTTCTGCACAATTTGTCTCTCTCAATAGTGAATGA

Protein Analysis

162

Amino Acids

17.96

Weight (kDa)

10.07

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 75
AclWI GGATC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 195
AgsI TTSAA 1 cut(s) 47
AhlI ACTAGT 1 cut(s) 310
AluBI AGCT 4 cut(s) 221, 265, 290, 400
AluI AGCT 4 cut(s) 221, 265, 290, 400
Alw26I GTCTC 1 cut(s) 475
AlwI GGATC 1 cut(s) 166
AsuNHI GCTAGC 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 475
BcuI ACTAGT 1 cut(s) 310
BfaI CTAG 5 cut(s) 29, 155, 266, 311, 426
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 25
BmsI GCATC 1 cut(s) 129
BmtI GCTAGC 1 cut(s) 269
BplI GAGNNNNNCTC 2 cut(s) 337, 369
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 66
BseLI CCNNNNNNNGG 1 cut(s) 195
BsgI GTGCAG 1 cut(s) 444
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 475
Bsp143I GATC 1 cut(s) 158
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 25
BspOI GCTAGC 1 cut(s) 269
BspPI GGATC 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 1 cut(s) 158
BssT1I CCWWGG 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 338
BstC8I GCNNGC 3 cut(s) 144, 267, 402
BstDEI CTNAG 3 cut(s) 125, 248, 383
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 66
BstKTI GATC 1 cut(s) 161
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 1 cut(s) 158
BstMWI GCNNNNNNNGC 4 cut(s) 143, 227, 287, 359
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BtgI CCRYGG 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 152
BtsCI GGATG 1 cut(s) 66
Cac8I GCNNGC 3 cut(s) 144, 267, 402
CviAII CATG 3 cut(s) 11, 88, 208
CviJI RGCY 7 cut(s) 32, 74, 221, 265, 281, 290, 400
CviKI_1 RGCY 7 cut(s) 32, 74, 221, 265, 281, 290, 400
DdeI CTNAG 3 cut(s) 125, 248, 383
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Eco130I CCWWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 3 cut(s) 14, 91, 211
FaiI YATR 9 cut(s) 12, 89, 105, 209, 228, 335, 337, 360, 420
FatI CATG 3 cut(s) 10, 87, 207
FauNDI CATATG 1 cut(s) 335
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 5 cut(s) 29, 155, 266, 311, 426
GluI GCNGC 1 cut(s) 75
Hin1II CATG 3 cut(s) 14, 91, 211
HinfI GANTC 3 cut(s) 377, 422, 440
Hpy188III TCNNGA 1 cut(s) 432
HpyAV CCTTC 5 cut(s) 53, 127, 185, 250, 385
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 3 cut(s) 230, 362, 461
HpyF10VI GCNNNNNNNGC 4 cut(s) 143, 227, 287, 359
HpyF3I CTNAG 3 cut(s) 125, 248, 383
Hsp92II CATG 3 cut(s) 14, 91, 211
Kzo9I GATC 1 cut(s) 158
LpnPI CCDG 2 cut(s) 128, 386
LweI GCATC 1 cut(s) 129
MaeI CTAG 5 cut(s) 29, 155, 266, 311, 426
MaeIII GTNAC 2 cut(s) 163, 445
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MboII GAAGA 2 cut(s) 223, 355
MflI RGATCY 1 cut(s) 158
MluCI AATT 4 cut(s) 147, 270, 405, 464
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 2 cut(s) 292, 333
MslI CAYNNNNRTG 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 290
MwoI GCNNNNNNNGC 4 cut(s) 143, 227, 287, 359
NcoI CCATGG 1 cut(s) 87
NdeI CATATG 1 cut(s) 335
NdeII GATC 1 cut(s) 158
NheI GCTAGC 1 cut(s) 265
NlaIII CATG 3 cut(s) 14, 91, 211
NlaIV GGNNCC 1 cut(s) 25
PfeI GAWTC 3 cut(s) 377, 422, 440
PkrI GCNGC 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 25
PsuI RGATCY 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 212
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 158
SetI ASST 6 cut(s) 38, 223, 267, 292, 402, 431
SfaNI GCATC 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 212
SpeI ACTAGT 1 cut(s) 310
Sse9I AATT 4 cut(s) 147, 270, 405, 464
SsiI CCGC 1 cut(s) 75
SspMI CTAG 5 cut(s) 29, 155, 266, 311, 426
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 431
TasI AATT 4 cut(s) 147, 270, 405, 464
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 3 cut(s) 377, 422, 440
TspDTI ATGAA 5 cut(s) 224, 230, 264, 322, 453
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XspI CTAG 5 cut(s) 29, 155, 266, 311, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.