Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0014834

Physical Location & Seq

Genomic Coordinates Reverse (-)

66735396 .. 66738087

Gene Structure 2692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG505700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGATCTATCAGTAGAGCCTAAAGCTGATCTCCCAACTCGACGCCCCAAACCTCTCCGTCTCTCACCTCTGCTTCATCTCCCAACAGTCGGTGCTTTTAAGTTCCAGACCTTGAAGATTTGGCGGGACTCCAACCTCCGCTGCGTGGAGTCCGTCAAGGCGCACGAGGAAGCCGTGAGCGCGGTGGTGGTGGCGAAGGACGGGACCGTCTACACCGGGTCGGCGGACCATCGGAGCTGGGTGTGGGCGAGACTGCAAGACGAGAAGCGCCACGTGTTGGTGGCGACGCTGGAGAAGCACAAGTCGGCGGTCGTCCTTCGCTGTGTCGACGCGGTCGGCCACATGGCGCTTCCCCATTCGTCCGTGTCCTCCACGCTGTGCCACTTCCGCATTATCAACAGGTTCAGAGTTTCCTCGGTATCCGATACTTTTTTGGATGATTGGCTCATTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

151

Amino Acids

16.98

Weight (kDa)

9.37

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	36 - 105	1e-05	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014834)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g07780 pycom12g13790 pycom15g04400
rosa_chinensis	RchiOBHm_Chr6g0254721
rosa_laevigata	RLG00000012597 RLG00000026348
rosa_multiflora	Rmu_sc0003880.1_g000037 Rmu_ssc0000116.1_g000020 Rmu_ssc0000357.1_g000003
rosa_roxburghii	Rroxscaffold_4G00311450
rosa_samantha	Rh2BG557500 Rh2DG003800 Rh3DG263600 Rh4BG141200 Rh5AG042400 Rh5DG042600 Rh6CG505700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccI	GTMKAC	2 cut(s)	210, 327
AccII	CGCG	2 cut(s)	182, 332
AciI	CCGC	7 cut(s)	124, 139, 182, 224, 308, 332, 388
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	337
AcvI	CACGTG	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	43
AdeI	CACNNNGTG	1 cut(s)	378
AfiI	CCNNNNNNNGG	3 cut(s)	89, 145, 277
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	115
AluBI	AGCT	2 cut(s)	26, 237
AluI	AGCT	2 cut(s)	26, 237
Alw26I	GTCTC	2 cut(s)	65, 244
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	141
AspLEI	GCGC	4 cut(s)	163, 182, 270, 349
AspS9I	GGNCC	2 cut(s)	204, 226
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	57
AvaII	GGWCC	2 cut(s)	204, 226
BauI	CACGAG	1 cut(s)	164
BbrPI	CACGTG	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	1 cut(s)	237
BceAI	ACGGC	1 cut(s)	158
BciVI	GTATCC	1 cut(s)	430
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	65, 244
BfaI	CTAG	1 cut(s)	454
BfoI	RGCGCY	2 cut(s)	271, 350
BfuI	GTATCC	1 cut(s)	430
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	217
Bme18I	GGWCC	2 cut(s)	204, 226
BmgT120I	GGNCC	2 cut(s)	204, 226
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	217
BsaAI	YACGTR	1 cut(s)	274
BsaHI	GRCGYC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 145, 277
Bse3DI	GCAATG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	3 cut(s)	89, 145, 277
BseMI	GCAATG	1 cut(s)	447
BseXI	GCAGC	1 cut(s)	128
BseYI	CCCAGC	1 cut(s)	237
Bsh1236I	CGCG	2 cut(s)	182, 332
Bsh1285I	CGRYCG	2 cut(s)	312, 336
BshFI	GGCC	1 cut(s)	339
BsiEI	CGRYCG	2 cut(s)	312, 336
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	2 cut(s)	140, 217
BslI	CCNNNNNNNGG	3 cut(s)	89, 145, 277
BsmAI	GTCTC	2 cut(s)	65, 244
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	2 cut(s)	140, 217
BsnI	GGCC	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	4, 28
BspACI	CCGC	7 cut(s)	124, 139, 182, 224, 308, 332, 388
BspANI	GGCC	1 cut(s)	339
BspFNI	CGCG	2 cut(s)	182, 332
BspLI	GGNNCC	1 cut(s)	205
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	447
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	2 cut(s)	4, 28
BssNI	GRCGYC	1 cut(s)	43
BssSI	CACGAG	1 cut(s)	164
Bst2BI	CACGAG	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	88, 208
BstACI	GRCGYC	1 cut(s)	43
BstBAI	YACGTR	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	442
BstFNI	CGCG	2 cut(s)	182, 332
BstH2I	RGCGCY	2 cut(s)	271, 350
BstHHI	GCGC	4 cut(s)	163, 182, 270, 349
BstKTI	GATC	2 cut(s)	7, 31
BstMAI	GTCTC	2 cut(s)	65, 244
BstMBI	GATC	2 cut(s)	4, 28
BstMCI	CGRYCG	2 cut(s)	312, 336
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 295, 387
BstSCI	CCNGG	1 cut(s)	215
BstUI	CGCG	2 cut(s)	182, 332
BstV1I	GCAGC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	442
CfoI	GCGC	4 cut(s)	163, 182, 270, 349
Cfr13I	GGNCC	2 cut(s)	204, 226
CseI	GACGC	3 cut(s)	51, 295, 338
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	6 cut(s)	19, 26, 173, 237, 339, 445
CviKI_1	RGCY	6 cut(s)	19, 26, 173, 237, 339, 445
DpnI	GATC	2 cut(s)	6, 30
DpnII	GATC	2 cut(s)	4, 28
DraIII	CACNNNGTG	1 cut(s)	378
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	337
EciI	GGCGGA	1 cut(s)	239
Eco47I	GGWCC	2 cut(s)	204, 226
Eco72I	CACGTG	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	1 cut(s)	346
FaiI	YATR	1 cut(s)	344
FaqI	GGGAC	2 cut(s)	140, 217
FatI	CATG	1 cut(s)	342
FauI	CCCGC	1 cut(s)	117
FblI	GTMKAC	2 cut(s)	210, 327
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	1 cut(s)	449
Fsp4HI	GCNGC	1 cut(s)	142
FspBI	CTAG	1 cut(s)	454
GlaI	GCGC	4 cut(s)	162, 181, 269, 348
GluI	GCNGC	1 cut(s)	142
GsaI	CCCAGC	1 cut(s)	241
GsuI	CTGGAG	1 cut(s)	311
HaeII	RGCGCY	2 cut(s)	271, 350
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	1 cut(s)	216
HgaI	GACGC	3 cut(s)	51, 295, 338
HhaI	GCGC	4 cut(s)	163, 182, 270, 349
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	4 cut(s)	161, 180, 268, 347
HinP1I	GCGC	4 cut(s)	161, 180, 268, 347
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	2 cut(s)	128, 149
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	2 cut(s)	211, 328
Hpy188I	TCNGA	3 cut(s)	234, 407, 424
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	2 cut(s)	211, 328
Hpy99I	CGWCG	3 cut(s)	45, 289, 332
HpyAV	CCTTC	2 cut(s)	190, 326
HpyCH4III	ACNGT	2 cut(s)	88, 208
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 295, 387
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	4 cut(s)	161, 180, 268, 347
Kzo9I	GATC	2 cut(s)	4, 28
LmnI	GCTCC	1 cut(s)	234
LpnPI	CCDG	5 cut(s)	119, 223, 229, 275, 385
Lsp1109I	GCAGC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	454
MaeII	ACGT	1 cut(s)	273
MalI	GATC	2 cut(s)	6, 30
MboI	GATC	2 cut(s)	4, 28
MboII	GAAGA	1 cut(s)	127
MflI	RGATCY	1 cut(s)	4
MlyI	GAGTC	2 cut(s)	122, 158
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	6 cut(s)	63, 78, 146, 160, 379, 424
MseI	TTAA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	217
MvnI	CGCG	2 cut(s)	182, 332
MwoI	GCNNNNNNNGC	3 cut(s)	179, 295, 387
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	2 cut(s)	4, 28
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PflFI	GACNNNGTC	1 cut(s)	332
PflMI	CCANNNNNTGG	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	143
PleI	GAGTC	2 cut(s)	122, 157
PmaCI	CACGTG	1 cut(s)	274
PmlI	CACGTG	1 cut(s)	274
PpsI	GAGTC	2 cut(s)	122, 157
Ppu21I	YACGTR	1 cut(s)	274
PspCI	CACGTG	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	2 cut(s)	204, 226
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	332
SalI	GTCGAC	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	2 cut(s)	4, 28
Sau96I	GGNCC	2 cut(s)	204, 226
SchI	GAGTC	2 cut(s)	122, 158
ScrFI	CCNGG	1 cut(s)	217
SetI	ASST	8 cut(s)	28, 55, 70, 113, 138, 239, 276, 404
SinI	GGWCC	2 cut(s)	204, 226
SsiI	CCGC	7 cut(s)	124, 139, 182, 224, 308, 332, 388
SspMI	CTAG	1 cut(s)	454
StyD4I	CCNGG	1 cut(s)	215
TaaI	ACNGT	2 cut(s)	88, 208
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	40, 327
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseI	GCWGC	1 cut(s)	141
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	3 cut(s)	47, 142, 352
Tth111I	GACNNNGTC	1 cut(s)	332
Van91I	CCANNNNNTGG	1 cut(s)	277
VpaK11BI	GGWCC	2 cut(s)	204, 226
XmiI	GTMKAC	2 cut(s)	210, 327
XspI	CTAG	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.