Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0014834

Physical Location & Seq

Genomic Coordinates Forward (+)

16281376 .. 16282162

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g13790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGATATATAAAAGTGTGGATCCACCATCTCTCTCCTCTCTCTCTCTCGCCTATCTTCTCTCTCTCTGGACACCCACCTGCATCCCCAAAACCTTCCTACCTTTCCCATGCATCCCCTTCAACCTTCCTTCCCCTCACCCTTTCTTCCCTCCGCTCCTATCTTCTCTGCGCAAGCTCTCCCTCCAAAAACTCTCCCATCTAGAGCCCCTCGACCTCTCCGTCTCCCACCTCTGCTTCACCACTCTCCCGCCTCGCCACCCCTCCCTTTCAATCACCTGCCTCGCTGTCAACCACAAGAAATGCCTCTGGATCTCCACTGCGTCAAGCCTGAAGATTTGGCAGGACTCGAATCTCCGCTGCGTCGAGTCGGTCAAGGCGCATGAGGACGCCGTGAATGCGTTGGCAGTGTCGAATGACGGGACCTTGTACACCGGGTTGACGGATTGTCGGATCTGGGTGTGGTCCAAATCGTTCGGGGAAGATGGAGAAGACGGGAGCAGGGTGGGATCTAGGTTGGGTGGTTCTGGTTTTGAGTTTGGGGAAGACGGGGAGCGAGGGGAAGAAAAGGTGAGGGGGAGGAAGGTTGGGGGGGATAGGTGGGAAGGGTTTGAGGGATGCAGGTGGGTGTCCAAAGAGAGAGAGAAGAGAGAGAAGAGAGAGGCGAGACAGAGAAAGGGTGGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

229

Amino Acids

25.43

Weight (kDa)

8.78

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	90 - 159	7.3e-06	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014834)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g07780 pycom12g13790 pycom15g04400
rosa_chinensis	RchiOBHm_Chr6g0254721
rosa_laevigata	RLG00000012597 RLG00000026348
rosa_multiflora	Rmu_sc0003880.1_g000037 Rmu_ssc0000116.1_g000020 Rmu_ssc0000357.1_g000003
rosa_roxburghii	Rroxscaffold_4G00311450
rosa_samantha	Rh2BG557500 Rh2DG003800 Rh3DG263600 Rh4BG141200 Rh5AG042400 Rh5DG042600 Rh6CG505700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	86, 284, 609
AasI	GACNNNNNNGTC	1 cut(s)	218
Acc16I	TGCGCA	1 cut(s)	170
Acc36I	ACCTGC	3 cut(s)	86, 284, 609
AccBSI	CCGCTC	1 cut(s)	154
AciI	CCGC	3 cut(s)	152, 248, 355
AclWI	GGATC	5 cut(s)	14, 27, 317, 458, 514
AcuI	CTGAAG	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	1 cut(s)	428
AgsI	TTSAA	2 cut(s)	121, 270
AhdI	GACNNNNNGTC	1 cut(s)	444
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw26I	GTCTC	2 cut(s)	226, 658
AlwI	GGATC	5 cut(s)	14, 27, 317, 458, 514
ApeKI	GCWGC	1 cut(s)	357
AspLEI	GCGC	2 cut(s)	171, 379
AspS9I	GGNCC	2 cut(s)	420, 462
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	4 cut(s)	128, 229, 265, 580
AvaII	GGWCC	2 cut(s)	420, 462
BamHI	GGATCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	2 cut(s)	495, 549
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	3 cut(s)	34, 204, 476
BceAI	ACGGC	1 cut(s)	374
BcnI	CCSGG	1 cut(s)	433
BcoDI	GTCTC	2 cut(s)	226, 658
BfaI	CTAG	2 cut(s)	200, 510
BfuAI	ACCTGC	3 cut(s)	86, 284, 609
BisI	GCNGC	1 cut(s)	358
BlsI	GCNGC	1 cut(s)	359
Bme1390I	CCNGG	1 cut(s)	433
Bme18I	GGWCC	2 cut(s)	420, 462
BmeRI	GACNNNNNGTC	1 cut(s)	444
BmgT120I	GGNCC	2 cut(s)	420, 462
BmiI	GGNNCC	2 cut(s)	21, 421
BmrFI	CCNGG	1 cut(s)	433
BmsI	GCATC	3 cut(s)	90, 120, 605
BpiI	GAAGAC	2 cut(s)	495, 549
BpuMI	CCSGG	1 cut(s)	433
BsaHI	GRCGYC	1 cut(s)	387
BseGI	GGATG	3 cut(s)	81, 111, 620
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	433
BsmAI	GTCTC	2 cut(s)	226, 658
BsmBI	CGTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	4 cut(s)	19, 309, 450, 506
BspACI	CCGC	3 cut(s)	152, 248, 355
BspLI	GGNNCC	2 cut(s)	21, 421
BspMI	ACCTGC	3 cut(s)	86, 284, 609
BspPI	GGATC	5 cut(s)	14, 27, 317, 458, 514
BsrBI	CCGCTC	1 cut(s)	154
BsrGI	TGTACA	1 cut(s)	426
BssMI	GATC	4 cut(s)	19, 309, 450, 506
BssNI	GRCGYC	1 cut(s)	387
Bst6I	CTCTTC	2 cut(s)	638, 647
BstACI	GRCGYC	1 cut(s)	387
BstAUI	TGTACA	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	173
BstF5I	GGATG	3 cut(s)	81, 111, 620
BstHHI	GCGC	2 cut(s)	171, 379
BstKTI	GATC	4 cut(s)	22, 312, 453, 509
BstMAI	GTCTC	2 cut(s)	226, 658
BstMBI	GATC	4 cut(s)	19, 309, 450, 506
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	431
BstV1I	GCAGC	1 cut(s)	344
BstV2I	GAAGAC	2 cut(s)	495, 549
BstX2I	RGATCY	4 cut(s)	19, 309, 450, 506
BstYI	RGATCY	4 cut(s)	19, 309, 450, 506
BtsCI	GGATG	3 cut(s)	81, 111, 620
BtsI	GCAGTG	2 cut(s)	315, 411
BtsIMutI	CAGTG	2 cut(s)	315, 411
BveI	ACCTGC	3 cut(s)	86, 284, 609
Cac8I	GCNNGC	1 cut(s)	173
CfoI	GCGC	2 cut(s)	171, 379
Cfr13I	GGNCC	2 cut(s)	420, 462
CseI	GACGC	3 cut(s)	309, 349, 395
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	2 cut(s)	108, 380
CviJI	RGCY	3 cut(s)	175, 205, 327
CviKI_1	RGCY	3 cut(s)	175, 205, 327
CviQI	GTAC	1 cut(s)	427
DpnI	GATC	4 cut(s)	21, 311, 452, 508
DpnII	GATC	4 cut(s)	19, 309, 450, 506
DrdI	GACNNNNNNGTC	1 cut(s)	218
DriI	GACNNNNNGTC	1 cut(s)	444
DseDI	GACNNNNNNGTC	1 cut(s)	218
Eam1104I	CTCTTC	2 cut(s)	638, 647
Eam1105I	GACNNNNNGTC	1 cut(s)	444
EarI	CTCTTC	2 cut(s)	638, 647
Eco24I	GRGCYC	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	420, 462
Eco57I	CTGAAG	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	420
EcoT22I	ATGCAT	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	226
FaeI	CATG	2 cut(s)	111, 383
FaiI	YATR	4 cut(s)	7, 9, 109, 381
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	2 cut(s)	107, 379
FauI	CCCGC	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	358
FokI	GGATG	3 cut(s)	68, 98, 627
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	358
FspBI	CTAG	2 cut(s)	200, 510
FspI	TGCGCA	1 cut(s)	170
GlaI	GCGC	2 cut(s)	170, 378
GluI	GCNGC	1 cut(s)	358
HapII	CCGG	1 cut(s)	432
HgaI	GACGC	3 cut(s)	309, 349, 395
HhaI	GCGC	2 cut(s)	171, 379
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	2 cut(s)	111, 383
Hin6I	GCGC	2 cut(s)	169, 377
HinP1I	GCGC	2 cut(s)	169, 377
HincII	GTYRAC	2 cut(s)	289, 438
HindII	GTYRAC	2 cut(s)	289, 438
HinfI	GANTC	3 cut(s)	344, 349, 365
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	4 cut(s)	128, 229, 265, 580
Hpy166II	GTNNAC	3 cut(s)	289, 429, 438
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	3 cut(s)	67, 200, 307
Hpy8I	GTNNAC	3 cut(s)	289, 429, 438
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	6 cut(s)	103, 127, 134, 138, 574, 596
HpyCH4V	TGCA	3 cut(s)	81, 111, 618
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	2 cut(s)	111, 383
HspAI	GCGC	2 cut(s)	169, 377
Kzo9I	GATC	4 cut(s)	19, 309, 450, 506
LmnI	GCTCC	3 cut(s)	159, 495, 550
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	3 cut(s)	90, 120, 605
MaeI	CTAG	2 cut(s)	200, 510
MalI	GATC	4 cut(s)	21, 311, 452, 508
MbiI	CCGCTC	1 cut(s)	154
MboI	GATC	4 cut(s)	19, 309, 450, 506
MflI	RGATCY	4 cut(s)	19, 309, 450, 506
MhlI	GDGCHC	1 cut(s)	207
MlyI	GAGTC	2 cut(s)	338, 374
MmeI	TCCRAC	1 cut(s)	428
Mph1103I	ATGCAT	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	357
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	1 cut(s)	433
Mva1269I	GAATGC	1 cut(s)	400
MwoI	GCNNNNNNNGC	1 cut(s)	395
NciI	CCSGG	1 cut(s)	433
NdeII	GATC	4 cut(s)	19, 309, 450, 506
NlaIII	CATG	2 cut(s)	111, 383
NlaIV	GGNNCC	2 cut(s)	21, 421
NsbI	TGCGCA	1 cut(s)	170
NsiI	ATGCAT	1 cut(s)	113
PaqCI	CACCTGC	3 cut(s)	86, 284, 609
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	359
PleI	GAGTC	2 cut(s)	338, 373
PpsI	GAGTC	2 cut(s)	338, 373
PpuMI	RGGWCCY	1 cut(s)	420
Psp5II	RGGWCCY	1 cut(s)	420
PspN4I	GGNNCC	2 cut(s)	21, 421
PspPI	GGNCC	2 cut(s)	420, 462
PspPPI	RGGWCCY	1 cut(s)	420
PsuI	RGATCY	4 cut(s)	19, 309, 450, 506
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SatI	GCNGC	1 cut(s)	358
Sau3AI	GATC	4 cut(s)	19, 309, 450, 506
Sau96I	GGNCC	2 cut(s)	420, 462
SchI	GAGTC	2 cut(s)	338, 374
ScrFI	CCNGG	1 cut(s)	433
SduI	GDGCHC	1 cut(s)	207
SfaNI	GCATC	3 cut(s)	90, 120, 605
SinI	GGWCC	2 cut(s)	420, 462
SsiI	CCGC	3 cut(s)	152, 248, 355
SspMI	CTAG	2 cut(s)	200, 510
StyD4I	CCNGG	1 cut(s)	431
TaqI	TCGA	4 cut(s)	210, 347, 363, 410
TaqII	GACCGA	1 cut(s)	358
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	1 cut(s)	349
TscAI	CASTG	2 cut(s)	322, 411
TseI	GCWGC	1 cut(s)	357
TspGWI	ACGGA	2 cut(s)	208, 455
TspRI	CASTG	2 cut(s)	322, 411
VpaK11BI	GGWCC	2 cut(s)	420, 462
XbaI	TCTAGA	1 cut(s)	199
XspI	CTAG	2 cut(s)	200, 510
Zsp2I	ATGCAT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.