Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003880.1

Orthogroup ID

OG0014834

Physical Location & Seq

Genomic Coordinates Reverse (-)

182935 .. 184787

Gene Structure 1853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003880.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgatggtggcgagggacgagtggacgagggcggcgatgaccgaaggggtttcagagcgctgcttcgtcgtctcggtcggtcatgcgacacatctcgtttcgaacttcgccggcgagcccaatttcttgcctgacctcaaactcttcgtcggaaaccttcccttcattgtcgacagagatcagctagctgagctcttcgaaggtgctggaaatgttgagatggttgagcgacacctgcaataccaacctccattccaacctctccctccagacgctgccatctgtccccacccttcaaaagctcatcttccaactcgacgccctaaacctctccgtctctcacctctgcttcatctcccaacagttggtgcttttaagttccagaccttgaagatttggcgggactccaacctccgcagcgtggagtccgtcaaggcgcacgaagacgccgtgagtgcggtggccgtggcgaaggacgggacagtctacaccgggtcggcggatcgtcagagccgggtgtgggcgagaccgcaagacaagaagcgccacgtgttggtggcgacgctggagaagcacaaatcggcggtcgtccttcgcgtctctctctggccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

204

Amino Acids

22.79

Weight (kDa)

9.39

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014834)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g07780 pycom12g13790 pycom15g04400
rosa_chinensis	RchiOBHm_Chr6g0254721
rosa_laevigata	RLG00000012597 RLG00000026348
rosa_multiflora	Rmu_sc0003880.1_g000037 Rmu_ssc0000116.1_g000020 Rmu_ssc0000357.1_g000003
rosa_roxburghii	Rroxscaffold_4G00311450
rosa_samantha	Rh2BG557500 Rh2DG003800 Rh3DG263600 Rh4BG141200 Rh5AG042400 Rh5DG042600 Rh6CG505700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	243
AasI	GACNNNNNNGTC	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	243
AccB7I	CCANNNNNTGG	2 cut(s)	365, 553
AccI	GTMKAC	2 cut(s)	171, 486
AccII	CGCG	1 cut(s)	597
AciI	CCGC	7 cut(s)	32, 400, 415, 458, 500, 530, 584
AclWI	GGATC	1 cut(s)	510
AcoI	YGGCCR	2 cut(s)	462, 608
AcvI	CACGTG	1 cut(s)	550
AcyI	GRCGYC	2 cut(s)	319, 447
AfeI	AGCGCT	1 cut(s)	59
AfiI	CCNNNNNNNGG	4 cut(s)	365, 421, 520, 553
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	2 cut(s)	297, 391
AluBI	AGCT	4 cut(s)	184, 188, 193, 302
AluI	AGCT	4 cut(s)	184, 188, 193, 302
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	4 cut(s)	76, 341, 520, 604
AlwI	GGATC	1 cut(s)	510
AlwNI	CAGNNNCTG	1 cut(s)	275
Aor51HI	AGCGCT	1 cut(s)	59
AoxI	GGCC	2 cut(s)	462, 608
ApeKI	GCWGC	3 cut(s)	60, 275, 417
ArsI	GACNNNNNNTTYG	4 cut(s)	132, 164, 570, 602
AspLEI	GCGC	3 cut(s)	60, 439, 546
AsuC2I	CCSGG	2 cut(s)	493, 515
AsuHPI	GGTGA	1 cut(s)	333
AsuII	TTCGAA	2 cut(s)	101, 198
AsuNHI	GCTAGC	1 cut(s)	184
BanII	GRGCYC	2 cut(s)	120, 195
BbrPI	CACGTG	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	47, 262, 429
BccI	CCATC	2 cut(s)	214, 287
BceAI	ACGGC	3 cut(s)	434, 449, 595
BcnI	CCSGG	2 cut(s)	493, 515
BcoDI	GTCTC	4 cut(s)	76, 341, 520, 604
BfaI	CTAG	1 cut(s)	185
BfoI	RGCGCY	2 cut(s)	61, 547
BfuAI	ACCTGC	1 cut(s)	243
BisI	GCNGC	4 cut(s)	33, 61, 276, 418
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	4 cut(s)	34, 62, 277, 419
Bme1390I	CCNGG	2 cut(s)	493, 515
BmrFI	CCNGG	2 cut(s)	493, 515
BmtI	GCTAGC	1 cut(s)	188
BpiI	GAAGAC	1 cut(s)	450
BpmI	CTGGAG	2 cut(s)	252, 587
Bpu1102I	GCTNAGC	1 cut(s)	189
Bpu14I	TTCGAA	2 cut(s)	101, 198
BpuMI	CCSGG	2 cut(s)	493, 515
BsaAI	YACGTR	1 cut(s)	550
BsaHI	GRCGYC	2 cut(s)	319, 447
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	4 cut(s)	365, 421, 520, 553
Bse118I	RCCGGY	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	465
BseLI	CCNNNNNNNGG	4 cut(s)	365, 421, 520, 553
BseMII	CTCAG	1 cut(s)	180
BseXI	GCAGC	3 cut(s)	47, 262, 429
Bsh1236I	CGCG	1 cut(s)	597
Bsh1285I	CGRYCG	2 cut(s)	78, 588
BshFI	GGCC	2 cut(s)	464, 610
BsiEI	CGRYCG	2 cut(s)	78, 588
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	3 cut(s)	111, 492, 514
BslFI	GGGAC	4 cut(s)	29, 270, 416, 493
BslI	CCNNNNNNNGG	4 cut(s)	365, 421, 520, 553
BsmAI	GTCTC	4 cut(s)	76, 341, 520, 604
BsmBI	CGTCTC	3 cut(s)	76, 341, 604
BsmFI	GGGAC	4 cut(s)	29, 270, 416, 493
BsnI	GGCC	2 cut(s)	464, 610
Bso31I	GGTCTC	1 cut(s)	520
Bsp119I	TTCGAA	2 cut(s)	101, 198
Bsp1286I	GDGCHC	2 cut(s)	120, 195
Bsp143I	GATC	2 cut(s)	178, 502
Bsp1720I	GCTNAGC	1 cut(s)	189
BspACI	CCGC	7 cut(s)	32, 400, 415, 458, 500, 530, 584
BspANI	GGCC	2 cut(s)	464, 610
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	597
BspMI	ACCTGC	1 cut(s)	243
BspOI	GCTAGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	510
BspQI	GCTCTTC	1 cut(s)	200
BspT104I	TTCGAA	2 cut(s)	101, 198
BspTNI	GGTCTC	1 cut(s)	520
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	2 cut(s)	178, 502
BssNI	GRCGYC	2 cut(s)	319, 447
Bst4CI	ACNGT	2 cut(s)	364, 484
Bst6I	CTCTTC	2 cut(s)	149, 200
BstACI	GRCGYC	2 cut(s)	319, 447
BstBAI	YACGTR	1 cut(s)	550
BstBI	TTCGAA	2 cut(s)	101, 198
BstC8I	GCNNGC	3 cut(s)	112, 116, 186
BstDEI	CTNAG	1 cut(s)	189
BstDSI	CCRYGG	1 cut(s)	465
BstFNI	CGCG	1 cut(s)	597
BstH2I	RGCGCY	2 cut(s)	61, 547
BstHHI	GCGC	3 cut(s)	60, 439, 546
BstKTI	GATC	2 cut(s)	181, 505
BstMAI	GTCTC	4 cut(s)	76, 341, 520, 604
BstMBI	GATC	2 cut(s)	178, 502
BstMCI	CGRYCG	2 cut(s)	78, 588
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 235, 455, 571
BstSCI	CCNGG	2 cut(s)	491, 513
BstUI	CGCG	1 cut(s)	597
BstV1I	GCAGC	3 cut(s)	47, 262, 429
BstV2I	GAAGAC	1 cut(s)	450
BsuRI	GGCC	2 cut(s)	464, 610
BtgI	CCRYGG	1 cut(s)	465
BtgZI	GCGATG	1 cut(s)	50
BveI	ACCTGC	1 cut(s)	243
Cac8I	GCNNGC	3 cut(s)	112, 116, 186
CaiI	CAGNNNCTG	1 cut(s)	275
CfoI	GCGC	3 cut(s)	60, 439, 546
Cfr10I	RCCGGY	1 cut(s)	110
CseI	GACGC	5 cut(s)	281, 327, 455, 571, 586
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	8 cut(s)	118, 184, 188, 193, 302, 464, 513, 610
CviKI_1	RGCY	8 cut(s)	118, 184, 188, 193, 302, 464, 513, 610
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	180, 504
DpnII	GATC	2 cut(s)	178, 502
DrdI	GACNNNNNNGTC	1 cut(s)	482
DseDI	GACNNNNNNGTC	1 cut(s)	482
EaeI	YGGCCR	2 cut(s)	462, 608
Eam1104I	CTCTTC	2 cut(s)	149, 200
EarI	CTCTTC	2 cut(s)	149, 200
EciI	GGCGGA	1 cut(s)	515
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	2 cut(s)	120, 195
Eco31I	GGTCTC	1 cut(s)	520
Eco47III	AGCGCT	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	193
Eco72I	CACGTG	1 cut(s)	550
EcoICRI	GAGCTC	1 cut(s)	193
EcoT38I	GRGCYC	2 cut(s)	120, 195
Esp3I	CGTCTC	3 cut(s)	76, 341, 604
FaeI	CATG	1 cut(s)	86
FaiI	YATR	1 cut(s)	84
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FaqI	GGGAC	4 cut(s)	29, 270, 416, 493
FatI	CATG	1 cut(s)	82
FauI	CCCGC	1 cut(s)	393
FblI	GTMKAC	2 cut(s)	171, 486
Fnu4HI	GCNGC	4 cut(s)	33, 61, 276, 418
FriOI	GRGCYC	2 cut(s)	120, 195
Fsp4HI	GCNGC	4 cut(s)	33, 61, 276, 418
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	3 cut(s)	59, 438, 545
GluI	GCNGC	4 cut(s)	33, 61, 276, 418
GsuI	CTGGAG	2 cut(s)	252, 587
HaeII	RGCGCY	2 cut(s)	61, 547
HaeIII	GGCC	2 cut(s)	464, 610
HapII	CCGG	3 cut(s)	111, 492, 514
HgaI	GACGC	5 cut(s)	281, 327, 455, 571, 586
HhaI	GCGC	3 cut(s)	60, 439, 546
Hin1I	GRCGYC	2 cut(s)	319, 447
Hin1II	CATG	1 cut(s)	86
Hin6I	GCGC	3 cut(s)	58, 437, 544
HinP1I	GCGC	3 cut(s)	58, 437, 544
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	404, 425
HpaII	CCGG	3 cut(s)	111, 492, 514
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	3 cut(s)	24, 172, 487
Hpy188I	TCNGA	3 cut(s)	55, 152, 510
Hpy188III	TCNNGA	2 cut(s)	269, 382
Hpy8I	GTNNAC	3 cut(s)	24, 172, 487
Hpy99I	CGWCG	4 cut(s)	71, 152, 321, 565
HpyAV	CCTTC	7 cut(s)	38, 167, 172, 194, 303, 466, 602
HpyCH4III	ACNGT	2 cut(s)	364, 484
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 235, 455, 571
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	549
Hsp92I	GRCGYC	2 cut(s)	319, 447
Hsp92II	CATG	1 cut(s)	86
HspAI	GCGC	3 cut(s)	58, 437, 544
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	178, 502
LguI	GCTCTTC	1 cut(s)	200
Lsp1109I	GCAGC	3 cut(s)	47, 262, 429
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	549
MalI	GATC	2 cut(s)	180, 504
MboI	GATC	2 cut(s)	178, 502
MboII	GAAGA	5 cut(s)	136, 187, 299, 403, 455
MhlI	GDGCHC	2 cut(s)	120, 195
MluCI	AATT	1 cut(s)	121
MlyI	GAGTC	2 cut(s)	398, 434
MmeI	TCCRAC	4 cut(s)	130, 280, 335, 432
MnlI	CCTC	9 cut(s)	6, 21, 146, 258, 270, 276, 339, 354, 422
MreI	CGCCGGCG	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	1 cut(s)	375
MspI	CCGG	3 cut(s)	111, 492, 514
MspR9I	CCNGG	2 cut(s)	493, 515
MvnI	CGCG	1 cut(s)	597
MwoI	GCNNNNNNNGC	4 cut(s)	190, 235, 455, 571
NaeI	GCCGGC	1 cut(s)	112
NciI	CCSGG	2 cut(s)	493, 515
NdeII	GATC	2 cut(s)	178, 502
NgoMIV	GCCGGC	1 cut(s)	110
NheI	GCTAGC	1 cut(s)	184
NlaIII	CATG	1 cut(s)	86
NspV	TTCGAA	2 cut(s)	101, 198
PaqCI	CACCTGC	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	3 cut(s)	32, 447, 594
PdiI	GCCGGC	1 cut(s)	112
PflMI	CCANNNNNTGG	2 cut(s)	365, 553
PkrI	GCNGC	4 cut(s)	34, 62, 277, 419
PleI	GAGTC	2 cut(s)	398, 433
PmaCI	CACGTG	1 cut(s)	550
PmlI	CACGTG	1 cut(s)	550
PpsI	GAGTC	2 cut(s)	398, 433
Ppu21I	YACGTR	1 cut(s)	550
Psp124BI	GAGCTC	1 cut(s)	195
PspCI	CACGTG	1 cut(s)	550
PstNI	CAGNNNCTG	1 cut(s)	275
SacI	GAGCTC	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	170
SapI	GCTCTTC	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	4 cut(s)	33, 61, 276, 418
Sau3AI	GATC	2 cut(s)	178, 502
SchI	GAGTC	2 cut(s)	398, 434
ScrFI	CCNGG	2 cut(s)	493, 515
SduI	GDGCHC	2 cut(s)	120, 195
SfuI	TTCGAA	2 cut(s)	101, 198
SgrAI	CRCCGGYG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	7 cut(s)	32, 400, 415, 458, 500, 530, 584
SspMI	CTAG	1 cut(s)	185
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	491, 513
TaaI	ACNGT	2 cut(s)	364, 484
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	4 cut(s)	101, 171, 198, 316
TaqII	GACCGA	3 cut(s)	56, 64, 68
TasI	AATT	1 cut(s)	121
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TseI	GCWGC	3 cut(s)	60, 275, 417
TspDTI	ATGAA	2 cut(s)	154, 341
TspGWI	ACGGA	2 cut(s)	323, 418
Van91I	CCANNNNNTGG	2 cut(s)	365, 553
XmiI	GTMKAC	2 cut(s)	171, 486
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.