Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0014834

Physical Location & Seq

Genomic Coordinates Reverse (-)

3203319 .. 3267380

Gene Structure 64062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG042400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCGACCACTCAATATGAGAAATCAAATGGTTCTCTTAGCAAGAAGGCGACGCTGGCAATTTCACTAGGATCTGTTACAGTTTTCCTTCTCTTACTTACCCTTTATTGGTTGGTAAGCATGAAGATGAAAGCTGAATATGCAAAGAAGTCAAATGCTCTAAGCAAGAAGGGAAAGCTAGCAATTTCATTAGCCTCATCAGCTGTTCTCGCTTTACTTTTACTAGTTTCCCTTTTGTATTGGTTCATAAGGAGGAAGAGAAATGCTCAATATGCAAAGAAGTCAAATGATTCTCTTAGCAAGAAGGCAAAGCTGGCAATTTCACTAGTATCTGTTTTAGCGCTATTTCTACTTGTTTTCCTTGTCTATTGGTTACTGAGGATGAAGAGAAAAGCTCAATATGCCAAGTCCAATGGTTCTCTTACCAAAAAGGCAAAGATGGCAATTTCAATACTATCTGTCCTATTGTTCTTTCTTGTGGTTTTCCTCGTGTACTGGCTGGTGAAGAGGAAGTTGAAAGCTAAATACGCAAAGAAGTCGAATGGTTCTCTTAGCAAGAAGGGGAAACTTGCAATTGCGATAACATCTATTTTAGTGTTCTTTCTTGTGATCTTTATCGCATATTGGTCTGTAAAGATGAAGAGAAAAGACGCTGCCATCTGTCCCCTCCCTTCAGAAGCTCATCTTCCAACTCGACGCCCCAAACCTCTCCGTCTCTCACCTCTGCTTCATCTCCCAACAGTCGGTGCCATAAACTTCCAGACCTTGAAGATTTGGCGGGACTCCAACCTCCGTTGCGTAGAGTCCGTCAAGGCGCACGAGGACGCCGTGAGTGCGGTGGCGGTGGCGAAGGACGGGACCGTCTACACCGGGTCGGCGGACCGTCGAAGCCGAGTGTGGGGGAGACCGCAAGACGAGAAGCGCCACGTGTTGGTGGCGACGTTGGAGAAGCACAAGTTGGCGGTCGTCCTTCGCGTCTCTCTCTGGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

330

Amino Acids

36.99

Weight (kDa)

10.59

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	254 - 314	1.9e-06	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014834)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g07780 pycom12g13790 pycom15g04400
rosa_chinensis	RchiOBHm_Chr6g0254721
rosa_laevigata	RLG00000012597 RLG00000026348
rosa_multiflora	Rmu_sc0003880.1_g000037 Rmu_ssc0000116.1_g000020 Rmu_ssc0000357.1_g000003
rosa_roxburghii	Rroxscaffold_4G00311450
rosa_samantha	Rh2BG557500 Rh2DG003800 Rh3DG263600 Rh4BG141200 Rh5AG042400 Rh5DG042600 Rh6CG505700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	860
AccB1I	GGYRCC	1 cut(s)	746
AccB7I	CCANNNNNTGG	1 cut(s)	931
AccI	GTMKAC	1 cut(s)	864
AccII	CGCG	1 cut(s)	975
AciI	CCGC	6 cut(s)	778, 836, 842, 878, 908, 962
AclWI	GGATC	1 cut(s)	79
AcoI	YGGCCR	1 cut(s)	986
AcuI	CTGAAG	1 cut(s)	657
AcvI	CACGTG	1 cut(s)	928
AcyI	GRCGYC	2 cut(s)	697, 825
AfaI	GTAC	1 cut(s)	494
AfeI	AGCGCT	1 cut(s)	342
AfiI	CCNNNNNNNGG	4 cut(s)	108, 743, 898, 931
AflIII	ACRYGT	1 cut(s)	927
AgsI	TTSAA	3 cut(s)	450, 517, 769
AhlI	ACTAGT	2 cut(s)	223, 325
AjuI	GAANNNNNNNTTGG	2 cut(s)	941, 973
AluBI	AGCT	7 cut(s)	134, 178, 203, 313, 395, 521, 680
AluI	AGCT	7 cut(s)	134, 178, 203, 313, 395, 521, 680
Alw26I	GTCTC	3 cut(s)	719, 898, 982
AlwI	GGATC	1 cut(s)	79
Aor51HI	AGCGCT	1 cut(s)	342
AoxI	GGCC	1 cut(s)	986
ApeKI	GCWGC	1 cut(s)	653
AspLEI	GCGC	3 cut(s)	343, 817, 924
AspS9I	GGNCC	2 cut(s)	858, 880
AsuC2I	CCSGG	1 cut(s)	871
AsuHPI	GGTGA	2 cut(s)	514, 711
AsuNHI	GCTAGC	1 cut(s)	178
AvaII	GGWCC	2 cut(s)	858, 880
BanI	GGYRCC	1 cut(s)	746
BauI	CACGAG	2 cut(s)	488, 818
BbrPI	CACGTG	1 cut(s)	928
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	2 cut(s)	433, 665
BceAI	ACGGC	2 cut(s)	812, 973
BcgI	CGANNNNNNTGC	2 cut(s)	519, 553
BcnI	CCSGG	1 cut(s)	871
BcoDI	GTCTC	3 cut(s)	719, 898, 982
BcuI	ACTAGT	2 cut(s)	223, 325
BfaI	CTAG	4 cut(s)	68, 179, 224, 326
BfoI	RGCGCY	2 cut(s)	344, 925
BisI	GCNGC	1 cut(s)	654
BlsI	GCNGC	1 cut(s)	655
Bme1390I	CCNGG	1 cut(s)	871
Bme18I	GGWCC	2 cut(s)	858, 880
BmgT120I	GGNCC	2 cut(s)	858, 880
BmiI	GGNNCC	2 cut(s)	748, 859
BmrFI	CCNGG	1 cut(s)	871
BmtI	GCTAGC	1 cut(s)	182
BplI	GAGNNNNNCTC	4 cut(s)	250, 282, 379, 411
BpuMI	CCSGG	1 cut(s)	871
BsaAI	YACGTR	1 cut(s)	928
BsaBI	GATNNNNATC	1 cut(s)	614
BsaHI	GRCGYC	2 cut(s)	697, 825
BsaI	GGTCTC	1 cut(s)	898
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 743, 898, 931
Bse1I	ACTGG	1 cut(s)	500
Bse8I	GATNNNNATC	1 cut(s)	614
BseGI	GGATG	1 cut(s)	387
BseJI	GATNNNNATC	1 cut(s)	614
BseLI	CCNNNNNNNGG	4 cut(s)	108, 743, 898, 931
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	500
BseXI	GCAGC	1 cut(s)	640
Bsh1236I	CGCG	1 cut(s)	975
Bsh1285I	CGRYCG	1 cut(s)	966
BshFI	GGCC	1 cut(s)	988
BshNI	GGYRCC	1 cut(s)	746
BsiEI	CGRYCG	1 cut(s)	966
BsiSI	CCGG	1 cut(s)	870
BslFI	GGGAC	3 cut(s)	648, 794, 871
BslI	CCNNNNNNNGG	4 cut(s)	108, 743, 898, 931
BsmAI	GTCTC	3 cut(s)	719, 898, 982
BsmBI	CGTCTC	2 cut(s)	719, 982
BsmFI	GGGAC	3 cut(s)	648, 794, 871
BsnI	GGCC	1 cut(s)	988
Bso31I	GGTCTC	1 cut(s)	898
Bsp143I	GATC	2 cut(s)	71, 609
BspACI	CCGC	6 cut(s)	778, 836, 842, 878, 908, 962
BspANI	GGCC	1 cut(s)	988
BspCNI	CTCAG	1 cut(s)	369
BspFNI	CGCG	1 cut(s)	975
BspLI	GGNNCC	2 cut(s)	748, 859
BspOI	GCTAGC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	746
BspTNI	GGTCTC	1 cut(s)	898
BsrI	ACTGG	1 cut(s)	500
BssMI	GATC	2 cut(s)	71, 609
BssNI	GRCGYC	2 cut(s)	697, 825
BssSI	CACGAG	2 cut(s)	488, 818
Bst2BI	CACGAG	2 cut(s)	488, 818
Bst4CI	ACNGT	4 cut(s)	82, 742, 862, 884
Bst6I	CTCTTC	4 cut(s)	251, 380, 500, 635
BstACI	GRCGYC	2 cut(s)	697, 825
BstBAI	YACGTR	1 cut(s)	928
BstC8I	GCNNGC	3 cut(s)	57, 180, 315
BstDEI	CTNAG	5 cut(s)	38, 161, 296, 377, 551
BstF5I	GGATG	1 cut(s)	387
BstFNI	CGCG	1 cut(s)	975
BstH2I	RGCGCY	2 cut(s)	344, 925
BstHHI	GCGC	3 cut(s)	343, 817, 924
BstKTI	GATC	2 cut(s)	74, 612
BstMAI	GTCTC	3 cut(s)	719, 898, 982
BstMBI	GATC	2 cut(s)	71, 609
BstMCI	CGRYCG	1 cut(s)	966
BstSCI	CCNGG	1 cut(s)	869
BstUI	CGCG	1 cut(s)	975
BstV1I	GCAGC	1 cut(s)	640
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	988
BtsCI	GGATG	1 cut(s)	387
Cac8I	GCNNGC	3 cut(s)	57, 180, 315
CfoI	GCGC	3 cut(s)	343, 817, 924
Cfr13I	GGNCC	2 cut(s)	858, 880
CpoI	CGGWCCG	1 cut(s)	880
CseI	GACGC	5 cut(s)	61, 659, 705, 833, 964
Csp6I	GTAC	1 cut(s)	493
CspI	CGGWCCG	1 cut(s)	880
CviAII	CATG	1 cut(s)	121
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	5 cut(s)	38, 161, 296, 377, 551
DpnI	GATC	2 cut(s)	73, 611
DpnII	GATC	2 cut(s)	71, 609
DrdI	GACNNNNNNGTC	1 cut(s)	860
DseDI	GACNNNNNNGTC	1 cut(s)	860
EaeI	YGGCCR	1 cut(s)	986
Eam1104I	CTCTTC	4 cut(s)	251, 380, 500, 635
EarI	CTCTTC	4 cut(s)	251, 380, 500, 635
EciI	GGCGGA	1 cut(s)	893
Eco31I	GGTCTC	1 cut(s)	898
Eco47I	GGWCC	2 cut(s)	858, 880
Eco47III	AGCGCT	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	657
Eco72I	CACGTG	1 cut(s)	928
Esp3I	CGTCTC	2 cut(s)	719, 982
FaeI	CATG	1 cut(s)	124
FaiI	YATR	8 cut(s)	18, 122, 141, 248, 273, 402, 622, 752
FalI	AAGNNNNNCTT	2 cut(s)	669, 701
FaqI	GGGAC	3 cut(s)	648, 794, 871
FatI	CATG	1 cut(s)	120
FauI	CCCGC	1 cut(s)	771
FblI	GTMKAC	1 cut(s)	864
Fnu4HI	GCNGC	1 cut(s)	654
FokI	GGATG	1 cut(s)	394
Fsp4HI	GCNGC	1 cut(s)	654
FspBI	CTAG	4 cut(s)	68, 179, 224, 326
GlaI	GCGC	3 cut(s)	342, 816, 923
GluI	GCNGC	1 cut(s)	654
HaeII	RGCGCY	2 cut(s)	344, 925
HaeIII	GGCC	1 cut(s)	988
HapII	CCGG	1 cut(s)	870
HgaI	GACGC	5 cut(s)	61, 659, 705, 833, 964
HhaI	GCGC	3 cut(s)	343, 817, 924
Hin1I	GRCGYC	2 cut(s)	697, 825
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	3 cut(s)	341, 815, 922
HinP1I	GCGC	3 cut(s)	341, 815, 922
HinfI	GANTC	3 cut(s)	290, 782, 803
HpaII	CCGG	1 cut(s)	870
HphI	GGTGA	2 cut(s)	514, 711
Hpy166II	GTNNAC	2 cut(s)	493, 865
Hpy188I	TCNGA	1 cut(s)	676
Hpy188III	TCNNGA	1 cut(s)	760
Hpy8I	GTNNAC	2 cut(s)	493, 865
Hpy99I	CGWCG	4 cut(s)	55, 699, 888, 943
HpyAV	CCTTC	8 cut(s)	40, 98, 163, 298, 553, 681, 844, 980
HpyCH4III	ACNGT	4 cut(s)	82, 742, 862, 884
HpyCH4IV	ACGT	2 cut(s)	927, 941
HpyCH4V	TGCA	3 cut(s)	143, 275, 572
HpyF3I	CTNAG	5 cut(s)	38, 161, 296, 377, 551
HpySE526I	ACGT	2 cut(s)	927, 941
Hsp92I	GRCGYC	2 cut(s)	697, 825
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	3 cut(s)	341, 815, 922
Kzo9I	GATC	2 cut(s)	71, 609
LpnPI	CCDG	7 cut(s)	41, 299, 481, 485, 773, 883, 970
Lsp1109I	GCAGC	1 cut(s)	640
MaeI	CTAG	4 cut(s)	68, 179, 224, 326
MaeII	ACGT	2 cut(s)	927, 941
MaeIII	GTNAC	2 cut(s)	76, 372
MalI	GATC	2 cut(s)	73, 611
MboI	GATC	2 cut(s)	71, 609
MboII	GAAGA	7 cut(s)	136, 268, 397, 517, 652, 677, 781
MfeI	CAATTG	1 cut(s)	573
MflI	RGATCY	1 cut(s)	71
MluCI	AATT	5 cut(s)	60, 183, 318, 444, 573
MlyI	GAGTC	2 cut(s)	776, 812
MmeI	TCCRAC	3 cut(s)	713, 810, 924
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	870
MspR9I	CCNGG	1 cut(s)	871
MunI	CAATTG	1 cut(s)	573
MvnI	CGCG	1 cut(s)	975
NciI	CCSGG	1 cut(s)	871
NdeII	GATC	2 cut(s)	71, 609
NheI	GCTAGC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	2 cut(s)	748, 859
NmeAIII	GCCGAG	1 cut(s)	917
PcsI	WCGNNNNNNNCGW	2 cut(s)	825, 972
PfeI	GAWTC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	931
PkrI	GCNGC	1 cut(s)	655
PleI	GAGTC	2 cut(s)	776, 811
PmaCI	CACGTG	1 cut(s)	928
PmlI	CACGTG	1 cut(s)	928
PpsI	GAGTC	2 cut(s)	776, 811
Ppu21I	YACGTR	1 cut(s)	928
PspCI	CACGTG	1 cut(s)	928
PspN4I	GGNNCC	2 cut(s)	748, 859
PspPI	GGNCC	2 cut(s)	858, 880
PsuI	RGATCY	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	125
Rsr2I	CGGWCCG	1 cut(s)	880
RsrII	CGGWCCG	1 cut(s)	880
SatI	GCNGC	1 cut(s)	654
Sau3AI	GATC	2 cut(s)	71, 609
Sau96I	GGNCC	2 cut(s)	858, 880
SchI	GAGTC	2 cut(s)	776, 812
ScrFI	CCNGG	1 cut(s)	871
SinI	GGWCC	2 cut(s)	858, 880
SmiMI	CAYNNNNRTG	1 cut(s)	125
SpeI	ACTAGT	2 cut(s)	223, 325
Sse9I	AATT	5 cut(s)	60, 183, 318, 444, 573
SsiI	CCGC	6 cut(s)	778, 836, 842, 878, 908, 962
SspMI	CTAG	4 cut(s)	68, 179, 224, 326
StyD4I	CCNGG	1 cut(s)	869
TaaI	ACNGT	4 cut(s)	82, 742, 862, 884
TaiI	ACGT	2 cut(s)	930, 944
TaqI	TCGA	3 cut(s)	539, 694, 886
TasI	AATT	5 cut(s)	60, 183, 318, 444, 573
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	1 cut(s)	290
TseI	GCWGC	1 cut(s)	653
TspDTI	ATGAA	7 cut(s)	137, 143, 177, 235, 398, 653, 719
TspGWI	ACGGA	3 cut(s)	701, 782, 796
Van91I	CCANNNNNTGG	1 cut(s)	931
VpaK11BI	GGWCC	2 cut(s)	858, 880
XmiI	GTMKAC	1 cut(s)	864
XspI	CTAG	4 cut(s)	68, 179, 224, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.