Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0014834

Physical Location & Seq

Genomic Coordinates Reverse (-)

26188192 .. 26189316

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG263600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGTTGCAGGTGACCTTGCCAAGCTGCTGGGACTTCTCTCCGGCCATTGTGCAACCAGGAGCTCCTCCAGTACTGCGACACCTGTAACACCAACCTCCATTCCAACCTCTCCCTCCAGACGCTGCCTGCAACACCAACCTCCATTCCAACCTCTCCCTCCAGACGCTGCCATCTATCCCCTCCCTTCAGAAGCTCATCTTCCAACTCGACCCCCCAAACCTCTCCGTCTCTCACCTCTGCTTCATCTCCCAACAGTCGGTGCCATAAACTTCCAGACCTTGAAGATTTGGCAGGACTCCAACCTCCGCTGCGTAGAGTCCGTCAAGGCGCACGAGGACGCCGTGAGTGCGGTGGCGGTGGCGAAGGACGGGACCGTCTACACCGGATCGGCGGACCGTCGAAGCCGGGTGTGGGGGAGACCGCAAGACGAGAAGCGCAAGTCGGCGGTCGCTGGAGAAGCACAAGTCGGCGGTCGCTTCGCGTCTCTCTCTGGCCGTAGTGGCAGACGTCAGCCATGTGGGGAGCTCGGGCCGAGCTGGCAGCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

183

Amino Acids

19.56

Weight (kDa)

9.95

Isoelectric Point (pI)

60.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	92 - 147	9.7e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014834)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g07780 pycom12g13790 pycom15g04400
rosa_chinensis	RchiOBHm_Chr6g0254721
rosa_laevigata	RLG00000012597 RLG00000026348
rosa_multiflora	Rmu_sc0003880.1_g000037 Rmu_ssc0000116.1_g000020 Rmu_ssc0000357.1_g000003
rosa_roxburghii	Rroxscaffold_4G00311450
rosa_samantha	Rh2BG557500 Rh2DG003800 Rh3DG263600 Rh4BG141200 Rh5AG042400 Rh5DG042600 Rh6CG505700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
AatII	GACGTC	1 cut(s)	511
AccB1I	GGYRCC	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	378
AccII	CGCG	1 cut(s)	482
AciI	CCGC	7 cut(s)	307, 350, 356, 392, 422, 446, 471
AclWI	GGATC	1 cut(s)	394
AcoI	YGGCCR	2 cut(s)	43, 493
AcuI	CTGAAG	1 cut(s)	171
AcyI	GRCGYC	2 cut(s)	339, 508
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	2 cut(s)	257, 412
AgsI	TTSAA	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	56
AluBI	AGCT	5 cut(s)	25, 63, 194, 526, 537
AluI	AGCT	5 cut(s)	25, 63, 194, 526, 537
Alw21I	GWGCWC	2 cut(s)	65, 528
Alw26I	GTCTC	3 cut(s)	233, 412, 489
AlwI	GGATC	1 cut(s)	394
AlwNI	CAGNNNCTG	2 cut(s)	123, 167
Ama87I	CYCGRG	1 cut(s)	527
AoxI	GGCC	3 cut(s)	43, 493, 530
ApeKI	GCWGC	5 cut(s)	25, 123, 167, 309, 541
AspLEI	GCGC	2 cut(s)	331, 438
AspS9I	GGNCC	3 cut(s)	372, 394, 530
AsuC2I	CCSGG	1 cut(s)	407
AsuHPI	GGTGA	2 cut(s)	23, 225
AvaI	CYCGRG	1 cut(s)	527
AvaII	GGWCC	2 cut(s)	372, 394
BanI	GGYRCC	1 cut(s)	260
BanII	GRGCYC	2 cut(s)	65, 528
BauI	CACGAG	1 cut(s)	332
Bbv12I	GWGCWC	2 cut(s)	65, 528
BbvI	GCAGC	4 cut(s)	12, 110, 154, 296
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	2 cut(s)	326, 480
BciT130I	CCWGG	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	407
BcoDI	GTCTC	3 cut(s)	233, 412, 489
BglI	GCCNNNNNGGC	2 cut(s)	501, 538
BisI	GCNGC	5 cut(s)	26, 124, 168, 310, 542
BlsI	GCNGC	5 cut(s)	27, 125, 169, 311, 543
BmcAI	AGTACT	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	58, 407
Bme18I	GGWCC	2 cut(s)	372, 394
BmeT110I	CYCGRG	1 cut(s)	527
BmgT120I	GGNCC	3 cut(s)	372, 394, 530
BmiI	GGNNCC	2 cut(s)	262, 373
BmrFI	CCNGG	2 cut(s)	58, 407
BpmI	CTGGAG	4 cut(s)	52, 100, 144, 474
BpuMI	CCSGG	1 cut(s)	407
BsaHI	GRCGYC	2 cut(s)	339, 508
BsaI	GGTCTC	1 cut(s)	412
BsaWI	WCCGGW	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 412
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	58
BseLI	CCNNNNNNNGG	2 cut(s)	257, 412
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	4 cut(s)	12, 110, 154, 296
BseYI	CCCAGC	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	482
Bsh1285I	CGRYCG	2 cut(s)	450, 475
BshFI	GGCC	3 cut(s)	45, 495, 532
BshNI	GGYRCC	1 cut(s)	260
BsiEI	CGRYCG	2 cut(s)	450, 475
BsiHKAI	GWGCWC	2 cut(s)	65, 528
BsiHKCI	CYCGRG	1 cut(s)	527
BsiSI	CCGG	3 cut(s)	42, 384, 406
BslFI	GGGAC	2 cut(s)	45, 385
BslI	CCNNNNNNNGG	2 cut(s)	257, 412
BsmAI	GTCTC	3 cut(s)	233, 412, 489
BsmBI	CGTCTC	2 cut(s)	233, 489
BsmFI	GGGAC	2 cut(s)	45, 385
BsnI	GGCC	3 cut(s)	45, 495, 532
Bso31I	GGTCTC	1 cut(s)	412
BsoBI	CYCGRG	1 cut(s)	527
Bsp1286I	GDGCHC	2 cut(s)	65, 528
Bsp143I	GATC	1 cut(s)	386
BspACI	CCGC	7 cut(s)	307, 350, 356, 392, 422, 446, 471
BspANI	GGCC	3 cut(s)	45, 495, 532
BspFNI	CGCG	1 cut(s)	482
BspLI	GGNNCC	2 cut(s)	262, 373
BspPI	GGATC	1 cut(s)	394
BspT107I	GGYRCC	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	412
BsrI	ACTGG	1 cut(s)	69
BssMI	GATC	1 cut(s)	386
BssNI	GRCGYC	2 cut(s)	339, 508
BssSI	CACGAG	1 cut(s)	332
Bst2BI	CACGAG	1 cut(s)	332
Bst2UI	CCWGG	1 cut(s)	58
Bst4CI	ACNGT	3 cut(s)	256, 376, 398
BstACI	GRCGYC	2 cut(s)	339, 508
BstC8I	GCNNGC	2 cut(s)	128, 539
BstEII	GGTNACC	1 cut(s)	11
BstFNI	CGCG	1 cut(s)	482
BstHHI	GCGC	2 cut(s)	331, 438
BstKTI	GATC	1 cut(s)	389
BstMAI	GTCTC	3 cut(s)	233, 412, 489
BstMBI	GATC	1 cut(s)	386
BstMCI	CGRYCG	2 cut(s)	450, 475
BstMWI	GCNNNNNNNGC	4 cut(s)	347, 458, 501, 538
BstNI	CCWGG	1 cut(s)	58
BstPI	GGTNACC	1 cut(s)	11
BstSCI	CCNGG	2 cut(s)	56, 405
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	4 cut(s)	12, 110, 154, 296
BstXI	CCANNNNNNTGG	1 cut(s)	28
BsuRI	GGCC	3 cut(s)	45, 495, 532
Cac8I	GCNNGC	2 cut(s)	128, 539
CaiI	CAGNNNCTG	2 cut(s)	123, 167
CfoI	GCGC	2 cut(s)	331, 438
Cfr13I	GGNCC	3 cut(s)	372, 394, 530
CpoI	CGGWCCG	1 cut(s)	394
CseI	GACGC	4 cut(s)	129, 173, 347, 471
Csp6I	GTAC	1 cut(s)	72
CspI	CGGWCCG	1 cut(s)	394
CviAII	CATG	1 cut(s)	516
CviQI	GTAC	1 cut(s)	72
DpnI	GATC	1 cut(s)	388
DpnII	GATC	1 cut(s)	386
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	2 cut(s)	43, 493
EciI	GGCGGA	1 cut(s)	407
Ecl136II	GAGCTC	2 cut(s)	63, 526
Eco24I	GRGCYC	2 cut(s)	65, 528
Eco31I	GGTCTC	1 cut(s)	412
Eco47I	GGWCC	2 cut(s)	372, 394
Eco53kI	GAGCTC	2 cut(s)	63, 526
Eco57I	CTGAAG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	527
Eco91I	GGTNACC	1 cut(s)	11
EcoICRI	GAGCTC	2 cut(s)	63, 526
EcoO65I	GGTNACC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	56
EcoT38I	GRGCYC	2 cut(s)	65, 528
Esp3I	CGTCTC	2 cut(s)	233, 489
FaeI	CATG	1 cut(s)	519
FaiI	YATR	2 cut(s)	266, 517
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FaqI	GGGAC	2 cut(s)	45, 385
FatI	CATG	1 cut(s)	515
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	5 cut(s)	26, 124, 168, 310, 542
FriOI	GRGCYC	2 cut(s)	65, 528
Fsp4HI	GCNGC	5 cut(s)	26, 124, 168, 310, 542
GlaI	GCGC	2 cut(s)	330, 437
GluI	GCNGC	5 cut(s)	26, 124, 168, 310, 542
GsaI	CCCAGC	1 cut(s)	32
GsuI	CTGGAG	4 cut(s)	52, 100, 144, 474
HaeIII	GGCC	3 cut(s)	45, 495, 532
HapII	CCGG	3 cut(s)	42, 384, 406
HgaI	GACGC	4 cut(s)	129, 173, 347, 471
HhaI	GCGC	2 cut(s)	331, 438
Hin1I	GRCGYC	2 cut(s)	339, 508
Hin1II	CATG	1 cut(s)	519
Hin6I	GCGC	2 cut(s)	329, 436
HinP1I	GCGC	2 cut(s)	329, 436
HinfI	GANTC	2 cut(s)	296, 317
HpaII	CCGG	3 cut(s)	42, 384, 406
HphI	GGTGA	2 cut(s)	23, 225
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	3 cut(s)	117, 161, 274
Hpy8I	GTNNAC	1 cut(s)	379
Hpy99I	CGWCG	1 cut(s)	402
HpyAV	CCTTC	2 cut(s)	195, 358
HpyCH4III	ACNGT	3 cut(s)	256, 376, 398
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	3 cut(s)	8, 53, 130
HpyF10VI	GCNNNNNNNGC	4 cut(s)	347, 458, 501, 538
HpySE526I	ACGT	1 cut(s)	508
Hsp92I	GRCGYC	2 cut(s)	339, 508
Hsp92II	CATG	1 cut(s)	519
HspAI	GCGC	2 cut(s)	329, 436
Kzo9I	GATC	1 cut(s)	386
LmnI	GCTCC	3 cut(s)	60, 68, 523
Lsp1109I	GCAGC	4 cut(s)	12, 110, 154, 296
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	2 cut(s)	11, 85
MalI	GATC	1 cut(s)	388
MboI	GATC	1 cut(s)	386
MboII	GAAGA	2 cut(s)	191, 295
MhlI	GDGCHC	2 cut(s)	65, 528
MlyI	GAGTC	2 cut(s)	290, 326
MmeI	TCCRAC	4 cut(s)	128, 172, 227, 324
MspA1I	CMGCKG	1 cut(s)	309
MspI	CCGG	3 cut(s)	42, 384, 406
MspR9I	CCNGG	2 cut(s)	58, 407
MvaI	CCWGG	1 cut(s)	58
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	4 cut(s)	347, 458, 501, 538
NciI	CCSGG	1 cut(s)	407
NdeII	GATC	1 cut(s)	386
NlaIII	CATG	1 cut(s)	519
NlaIV	GGNNCC	2 cut(s)	262, 373
NmuCI	GTSAC	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PkrI	GCNGC	5 cut(s)	27, 125, 169, 311, 543
PleI	GAGTC	2 cut(s)	290, 325
PpsI	GAGTC	2 cut(s)	290, 325
Psp124BI	GAGCTC	2 cut(s)	65, 528
Psp6I	CCWGG	1 cut(s)	56
PspEI	GGTNACC	1 cut(s)	11
PspFI	CCCAGC	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	262, 373
PspPI	GGNCC	3 cut(s)	372, 394, 530
PstNI	CAGNNNCTG	2 cut(s)	123, 167
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
Rsr2I	CGGWCCG	1 cut(s)	394
RsrII	CGGWCCG	1 cut(s)	394
SacI	GAGCTC	2 cut(s)	65, 528
SatI	GCNGC	5 cut(s)	26, 124, 168, 310, 542
Sau3AI	GATC	1 cut(s)	386
Sau96I	GGNCC	3 cut(s)	372, 394, 530
ScaI	AGTACT	1 cut(s)	73
SchI	GAGTC	2 cut(s)	290, 326
ScrFI	CCNGG	2 cut(s)	58, 407
SduI	GDGCHC	2 cut(s)	65, 528
SinI	GGWCC	2 cut(s)	372, 394
SsiI	CCGC	7 cut(s)	307, 350, 356, 392, 422, 446, 471
SstI	GAGCTC	2 cut(s)	65, 528
StyD4I	CCNGG	2 cut(s)	56, 405
TaaI	ACNGT	3 cut(s)	256, 376, 398
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	2 cut(s)	208, 400
TatI	WGTACW	1 cut(s)	71
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	5 cut(s)	25, 123, 167, 309, 541
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	233
TspGWI	ACGGA	2 cut(s)	215, 310
VpaK11BI	GGWCC	2 cut(s)	372, 394
XmiI	GTMKAC	1 cut(s)	378
ZraI	GACGTC	1 cut(s)	509
ZrmI	AGTACT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.