Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014834

Physical Location & Seq

Genomic Coordinates Forward (+)

2639045 .. 2639978

Gene Structure 934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g04400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTGGATCAATGGATCAGAGGATGCTGCAGATTTACTCATTTACATAAGTAATTGTACATGCTGTTATGTCCTTAAGCTGAGCATGCTTGCAAATCAAATCACGGTTTTATCTAATTTTGTTACAAAAAACTATCTCAACAATTGGTGTCACGACACTTTCATACCTCATCTTTTTAAAATGAAAATGTCATACCTATCTTACGAATTTGTGTCAATGTCATACCTCCGTCAGTTTTTCTTAAAAATTAAAAAATTAAAAATAAAATTATTTTTTTTATATAAAGCCCAAGATTGTCGATCCAACCTCTCTCTCTCTCTGGACACCCACCTGCATCCCCAAAACCTTCCCACCCTTCCCACCCATCCCCCCAACCTGTATCCCCCTCACCCTTTCTTCCCCCCCCCCCCGCTCCCATCTTCTCTGCGCAACCTCTCCCTCCAAAAACTCTCCCATCTAGAGCCCCTTAACCTAACCGTCTCTCACCTCTCACCTGCATCACTGTCAACCACAATCTTTTCTACGCCGCATCGGGCCACGAGTAATGCCTCTGGATCGATCCTCTGCGTCGAGTCGATCAAGGCGCATGAGGATGCCGTGAATGCGTTGGCAGTGTCGAACGACGAGACGATGTACACCGGGTTGATGGATTGTCAGATTTGGATGTGGTCCAAACCATTTGGGGAAGAAGGAGAAGACGGGAGTAGGGTGGGATCTGGGTTGGGTGGTTCTAGTTTTAAGTTTGGAGCGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

252

Amino Acids

28.1

Weight (kDa)

7.65

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014834)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g07780 pycom12g13790 pycom15g04400
rosa_chinensis	RchiOBHm_Chr6g0254721
rosa_laevigata	RLG00000012597 RLG00000026348
rosa_multiflora	Rmu_sc0003880.1_g000037 Rmu_ssc0000116.1_g000020 Rmu_ssc0000357.1_g000003
rosa_roxburghii	Rroxscaffold_4G00311450
rosa_samantha	Rh2BG557500 Rh2DG003800 Rh3DG263600 Rh4BG141200 Rh5AG042400 Rh5DG042600 Rh6CG505700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	339, 502
Acc16I	TGCGCA	1 cut(s)	428
Acc36I	ACCTGC	2 cut(s)	339, 502
AccBSI	CCGCTC	2 cut(s)	412, 749
AciI	CCGC	3 cut(s)	410, 527, 749
AclWI	GGATC	6 cut(s)	14, 22, 294, 553, 562, 721
AcsI	RAATTY	1 cut(s)	206
AfaI	GTAC	2 cut(s)	58, 635
AflII	CTTAAG	1 cut(s)	74
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	484, 620
AlwI	GGATC	6 cut(s)	14, 22, 294, 553, 562, 721
AoxI	GGCC	1 cut(s)	534
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	206
AspLEI	GCGC	2 cut(s)	429, 586
AspS9I	GGNCC	2 cut(s)	534, 669
AsuC2I	CCSGG	1 cut(s)	640
AsuHPI	GGTGA	3 cut(s)	380, 476, 483
AvaII	GGWCC	1 cut(s)	669
BanII	GRGCYC	1 cut(s)	465
BauI	CACGAG	1 cut(s)	538
BbsI	GAAGAC	1 cut(s)	702
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	4 cut(s)	372, 424, 462, 640
BceAI	ACGGC	1 cut(s)	581
BciVI	GTATCC	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	640
BcoDI	GTCTC	2 cut(s)	484, 620
BfaI	CTAG	2 cut(s)	458, 732
BfmI	CTRYAG	1 cut(s)	27
BfrI	CTTAAG	1 cut(s)	74
BfuAI	ACCTGC	2 cut(s)	339, 502
BfuI	GTATCC	1 cut(s)	390
BisI	GCNGC	2 cut(s)	27, 527
BlpI	GCTNAGC	1 cut(s)	80
BlsI	GCNGC	2 cut(s)	28, 528
Bme1390I	CCNGG	1 cut(s)	640
Bme18I	GGWCC	1 cut(s)	669
BmgT120I	GGNCC	2 cut(s)	534, 669
BmrFI	CCNGG	1 cut(s)	640
BmsI	GCATC	5 cut(s)	13, 343, 506, 538, 583
BpiI	GAAGAC	1 cut(s)	702
Bpu1102I	GCTNAGC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	640
Bsa29I	ATCGAT	1 cut(s)	557
BseCI	ATCGAT	1 cut(s)	557
BseGI	GGATG	5 cut(s)	28, 334, 364, 598, 669
BseMII	CTCAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	13
BshFI	GGCC	1 cut(s)	536
BshVI	ATCGAT	1 cut(s)	557
BsiSI	CCGG	1 cut(s)	639
BsmAI	GTCTC	2 cut(s)	484, 620
BsmBI	CGTCTC	2 cut(s)	484, 620
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp1407I	TGTACA	2 cut(s)	56, 633
Bsp143I	GATC	7 cut(s)	6, 14, 299, 554, 558, 576, 713
Bsp1720I	GCTNAGC	1 cut(s)	80
BspACI	CCGC	3 cut(s)	410, 527, 749
BspANI	GGCC	1 cut(s)	536
BspCNI	CTCAG	1 cut(s)	72
BspDI	ATCGAT	1 cut(s)	557
BspMAI	CTGCAG	1 cut(s)	31
BspMI	ACCTGC	2 cut(s)	339, 502
BspPI	GGATC	6 cut(s)	14, 22, 294, 553, 562, 721
BspTI	CTTAAG	1 cut(s)	74
BsrBI	CCGCTC	2 cut(s)	412, 749
BsrGI	TGTACA	2 cut(s)	56, 633
BssMI	GATC	7 cut(s)	6, 14, 299, 554, 558, 576, 713
BssSI	CACGAG	1 cut(s)	538
Bst2BI	CACGAG	1 cut(s)	538
Bst4CI	ACNGT	3 cut(s)	106, 478, 504
BstAFI	CTTAAG	1 cut(s)	74
BstAUI	TGTACA	2 cut(s)	56, 633
BstC8I	GCNNGC	2 cut(s)	86, 90
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	5 cut(s)	28, 334, 364, 598, 669
BstHHI	GCGC	2 cut(s)	429, 586
BstKTI	GATC	7 cut(s)	9, 17, 302, 557, 561, 579, 716
BstMAI	GTCTC	2 cut(s)	484, 620
BstMBI	GATC	7 cut(s)	6, 14, 299, 554, 558, 576, 713
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 602
BstNSI	RCATGY	2 cut(s)	63, 88
BstSCI	CCNGG	1 cut(s)	638
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	13
BstV2I	GAAGAC	1 cut(s)	702
BstX2I	RGATCY	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	713
Bsu15I	ATCGAT	1 cut(s)	557
BsuI	GTATCC	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	536
BsuTUI	ATCGAT	1 cut(s)	557
BtsCI	GGATG	5 cut(s)	28, 334, 364, 598, 669
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	2 cut(s)	500, 618
BveI	ACCTGC	2 cut(s)	339, 502
Cac8I	GCNNGC	2 cut(s)	86, 90
CfoI	GCGC	2 cut(s)	429, 586
Cfr13I	GGNCC	2 cut(s)	534, 669
ClaI	ATCGAT	1 cut(s)	557
CseI	GACGC	1 cut(s)	556
Csp6I	GTAC	2 cut(s)	57, 634
CviAII	CATG	3 cut(s)	60, 85, 587
CviJI	RGCY	4 cut(s)	79, 287, 463, 536
CviKI_1	RGCY	4 cut(s)	79, 287, 463, 536
CviQI	GTAC	2 cut(s)	57, 634
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	7 cut(s)	8, 16, 301, 556, 560, 578, 715
DpnII	GATC	7 cut(s)	6, 14, 299, 554, 558, 576, 713
DraI	TTTAAA	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	669
EcoT38I	GRGCYC	1 cut(s)	465
Esp3I	CGTCTC	2 cut(s)	484, 620
FaeI	CATG	3 cut(s)	63, 88, 590
FatI	CATG	3 cut(s)	59, 84, 586
FauI	CCCGC	2 cut(s)	417, 742
Fnu4HI	GCNGC	2 cut(s)	27, 527
FokI	GGATG	5 cut(s)	35, 321, 351, 605, 676
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	2 cut(s)	27, 527
FspBI	CTAG	2 cut(s)	458, 732
FspI	TGCGCA	1 cut(s)	428
GlaI	GCGC	2 cut(s)	428, 585
GluI	GCNGC	2 cut(s)	27, 527
HaeIII	GGCC	1 cut(s)	536
HapII	CCGG	1 cut(s)	639
HgaI	GACGC	1 cut(s)	556
HhaI	GCGC	2 cut(s)	429, 586
Hin1II	CATG	3 cut(s)	63, 88, 590
Hin6I	GCGC	2 cut(s)	427, 584
HinP1I	GCGC	2 cut(s)	427, 584
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HinfI	GANTC	1 cut(s)	572
HpaII	CCGG	1 cut(s)	639
HphI	GGTGA	3 cut(s)	380, 476, 483
Hpy166II	GTNNAC	2 cut(s)	507, 636
Hpy188I	TCNGA	2 cut(s)	19, 657
Hpy188III	TCNNGA	4 cut(s)	152, 320, 458, 552
Hpy8I	GTNNAC	2 cut(s)	507, 636
Hpy99I	CGWCG	2 cut(s)	572, 626
HpyAV	CCTTC	3 cut(s)	356, 365, 683
HpyCH4III	ACNGT	3 cut(s)	106, 478, 504
HpyCH4V	TGCA	4 cut(s)	29, 92, 334, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 602
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	3 cut(s)	63, 88, 590
HspAI	GCGC	2 cut(s)	427, 584
Kzo9I	GATC	7 cut(s)	6, 14, 299, 554, 558, 576, 713
LmnI	GCTCC	2 cut(s)	417, 746
LpnPI	CCDG	7 cut(s)	305, 344, 389, 507, 537, 652, 702
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	5 cut(s)	13, 343, 506, 538, 583
MaeI	CTAG	2 cut(s)	458, 732
MaeIII	GTNAC	2 cut(s)	121, 149
MalI	GATC	7 cut(s)	8, 16, 301, 556, 560, 578, 715
MbiI	CCGCTC	2 cut(s)	412, 749
MboI	GATC	7 cut(s)	6, 14, 299, 554, 558, 576, 713
MboII	GAAGA	4 cut(s)	388, 411, 698, 707
MfeI	CAATTG	1 cut(s)	142
MflI	RGATCY	1 cut(s)	713
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	7 cut(s)	52, 115, 142, 206, 246, 254, 266
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	327
MseI	TTAA	7 cut(s)	75, 177, 242, 249, 257, 468, 738
MslI	CAYNNNNRTG	1 cut(s)	591
MspCI	CTTAAG	1 cut(s)	74
MspI	CCGG	1 cut(s)	639
MspR9I	CCNGG	1 cut(s)	640
MunI	CAATTG	1 cut(s)	142
Mva1269I	GAATGC	1 cut(s)	607
MwoI	GCNNNNNNNGC	2 cut(s)	85, 602
NciI	CCSGG	1 cut(s)	640
NdeII	GATC	7 cut(s)	6, 14, 299, 554, 558, 576, 713
NlaIII	CATG	3 cut(s)	63, 88, 590
NmuCI	GTSAC	1 cut(s)	149
NsbI	TGCGCA	1 cut(s)	428
NspI	RCATGY	2 cut(s)	63, 88
PaeI	GCATGC	1 cut(s)	88
PaqCI	CACCTGC	2 cut(s)	339, 502
PctI	GAATGC	1 cut(s)	607
PkrI	GCNGC	2 cut(s)	28, 528
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
PspPI	GGNCC	2 cut(s)	534, 669
PstI	CTGCAG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	713
RsaI	GTAC	2 cut(s)	58, 635
RsaNI	GTAC	2 cut(s)	57, 634
RseI	CAYNNNNRTG	1 cut(s)	591
SaqAI	TTAA	7 cut(s)	75, 177, 242, 249, 257, 468, 738
SatI	GCNGC	2 cut(s)	27, 527
Sau3AI	GATC	7 cut(s)	6, 14, 299, 554, 558, 576, 713
Sau96I	GGNCC	2 cut(s)	534, 669
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	1 cut(s)	640
SduI	GDGCHC	1 cut(s)	465
SfaNI	GCATC	5 cut(s)	13, 343, 506, 538, 583
SfcI	CTRYAG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	669
SmiMI	CAYNNNNRTG	1 cut(s)	591
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SphI	GCATGC	1 cut(s)	88
Sse9I	AATT	7 cut(s)	52, 115, 142, 206, 246, 254, 266
SsiI	CCGC	3 cut(s)	410, 527, 749
SspMI	CTAG	2 cut(s)	458, 732
StyD4I	CCNGG	1 cut(s)	638
TaaI	ACNGT	3 cut(s)	106, 478, 504
TaqI	TCGA	5 cut(s)	298, 557, 570, 575, 617
TasI	AATT	7 cut(s)	52, 115, 142, 206, 246, 254, 266
TatI	WGTACW	2 cut(s)	56, 633
TauI	GCSGC	1 cut(s)	529
Tru1I	TTAA	7 cut(s)	75, 177, 242, 249, 257, 468, 738
Tru9I	TTAA	7 cut(s)	75, 177, 242, 249, 257, 468, 738
TscAI	CASTG	2 cut(s)	507, 618
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	151, 197
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	2 cut(s)	507, 618
Vha464I	CTTAAG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	669
XapI	RAATTY	1 cut(s)	206
XbaI	TCTAGA	1 cut(s)	457
XceI	RCATGY	2 cut(s)	63, 88
XspI	CTAG	2 cut(s)	458, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.