Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014834

Physical Location & Seq

Genomic Coordinates Reverse (-)

33983751 .. 33988627

Gene Structure 4877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCACTACTCTGTTTCTTCTTTCTCCGCGCGTGAGGCGCGTTCTAGGCTTTCTTTCCGGACCTTGAAGATTTGGCGGGACTCCAACCTCCGCCGTGTGGAGTCCGTCAAGGCGAACGAGGAGGCCGTGAGTGCGGTGGCGGTGGCGAAGGACGGGACCGTCTACACCGGGTCGGCGGACCGTCGGAGCCAAGTGTGGGCGAGACCGCAAGACGAGAAGCGCCACGTGTTGGTGGCGATGCCGGAGAAGCACAAGTCGGCGGTATTCCTTCGCGTCTCTCTCTCGGCCGTAGTTGCCGACGTCAACCATGTGGGGAGCTCGGCCGAGCTAGCAGCAAACTTGACCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

116

Amino Acids

12.77

Weight (kDa)

10.18

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014834)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g07780 pycom12g13790 pycom15g04400
rosa_chinensis	RchiOBHm_Chr6g0254721
rosa_laevigata	RLG00000012597 RLG00000026348
rosa_multiflora	Rmu_sc0003880.1_g000037 Rmu_ssc0000116.1_g000020 Rmu_ssc0000357.1_g000003
rosa_roxburghii	Rroxscaffold_4G00311450
rosa_samantha	Rh2BG557500 Rh2DG003800 Rh3DG263600 Rh4BG141200 Rh5AG042400 Rh5DG042600 Rh6CG505700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AatII	GACGTC	1 cut(s)	303
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	4 cut(s)	29, 31, 40, 273
AccIII	TCCGGA	1 cut(s)	57
AciI	CCGC	8 cut(s)	27, 76, 91, 134, 140, 176, 206, 260
AcoI	YGGCCR	2 cut(s)	285, 321
AcvI	CACGTG	1 cut(s)	226
AcyI	GRCGYC	1 cut(s)	300
AfiI	CCNNNNNNNGG	3 cut(s)	97, 196, 229
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	67
AluBI	AGCT	2 cut(s)	318, 328
AluI	AGCT	2 cut(s)	318, 328
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	2 cut(s)	196, 280
Aor13HI	TCCGGA	1 cut(s)	57
AoxI	GGCC	3 cut(s)	123, 285, 321
ApeKI	GCWGC	1 cut(s)	332
AspLEI	GCGC	3 cut(s)	31, 40, 222
AspS9I	GGNCC	3 cut(s)	60, 156, 178
AsuC2I	CCSGG	1 cut(s)	169
AsuNHI	GCTAGC	1 cut(s)	328
AvaII	GGWCC	3 cut(s)	60, 156, 178
BanII	GRGCYC	1 cut(s)	320
BbrPI	CACGTG	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	344
BceAI	ACGGC	3 cut(s)	78, 110, 272
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	196, 280
BfaI	CTAG	3 cut(s)	45, 329, 349
BfoI	RGCGCY	1 cut(s)	223
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	3 cut(s)	60, 156, 178
BmgT120I	GGNCC	3 cut(s)	60, 156, 178
BmiI	GGNNCC	2 cut(s)	157, 188
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	228
BmtI	GCTAGC	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	169
BsaAI	YACGTR	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	196
BsaWI	WCCGGW	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 196, 229
Bse118I	RCCGGY	1 cut(s)	344
BseAI	TCCGGA	1 cut(s)	57
BseLI	CCNNNNNNNGG	3 cut(s)	97, 196, 229
BseRI	GAGGAG	1 cut(s)	134
BseX3I	CGGCCG	2 cut(s)	285, 321
BseXI	GCAGC	1 cut(s)	344
Bsh1236I	CGCG	4 cut(s)	29, 31, 40, 273
Bsh1285I	CGRYCG	2 cut(s)	288, 324
BshFI	GGCC	3 cut(s)	125, 287, 323
BsiEI	CGRYCG	2 cut(s)	288, 324
BsiHKAI	GWGCWC	1 cut(s)	320
BsiSI	CCGG	4 cut(s)	58, 168, 242, 345
BslFI	GGGAC	2 cut(s)	92, 169
BslI	CCNNNNNNNGG	3 cut(s)	97, 196, 229
BsmAI	GTCTC	2 cut(s)	196, 280
BsmBI	CGTCTC	1 cut(s)	280
BsmFI	GGGAC	2 cut(s)	92, 169
BsnI	GGCC	3 cut(s)	125, 287, 323
Bso31I	GGTCTC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp13I	TCCGGA	1 cut(s)	57
BspACI	CCGC	8 cut(s)	27, 76, 91, 134, 140, 176, 206, 260
BspANI	GGCC	3 cut(s)	125, 287, 323
BspEI	TCCGGA	1 cut(s)	57
BspFNI	CGCG	4 cut(s)	29, 31, 40, 273
BspLI	GGNNCC	2 cut(s)	157, 188
BspOI	GCTAGC	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	344
BssAI	RCCGGY	1 cut(s)	344
BssNI	GRCGYC	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	160, 182
BstACI	GRCGYC	1 cut(s)	300
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	330
BstFNI	CGCG	4 cut(s)	29, 31, 40, 273
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	3 cut(s)	31, 40, 222
BstMAI	GTCTC	2 cut(s)	196, 280
BstMCI	CGRYCG	2 cut(s)	288, 324
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 37, 46, 131, 247, 293, 329
BstSCI	CCNGG	1 cut(s)	167
BstUI	CGCG	4 cut(s)	29, 31, 40, 273
BstV1I	GCAGC	1 cut(s)	344
BstZI	CGGCCG	2 cut(s)	285, 321
BsuRI	GGCC	3 cut(s)	125, 287, 323
BtgZI	GCGATG	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	330
CfoI	GCGC	3 cut(s)	31, 40, 222
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	3 cut(s)	60, 156, 178
CpoI	CGGWCCG	1 cut(s)	178
CseI	GACGC	1 cut(s)	262
CspI	CGGWCCG	1 cut(s)	178
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	8 cut(s)	49, 125, 189, 287, 318, 323, 328, 348
CviKI_1	RGCY	8 cut(s)	49, 125, 189, 287, 318, 323, 328, 348
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	2 cut(s)	285, 321
EagI	CGGCCG	2 cut(s)	285, 321
EciI	GGCGGA	2 cut(s)	80, 191
Ecl136II	GAGCTC	1 cut(s)	318
EclXI	CGGCCG	2 cut(s)	285, 321
Eco24I	GRGCYC	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	196
Eco47I	GGWCC	3 cut(s)	60, 156, 178
Eco52I	CGGCCG	2 cut(s)	285, 321
Eco53kI	GAGCTC	1 cut(s)	318
Eco72I	CACGTG	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	320
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	1 cut(s)	311
FaiI	YATR	1 cut(s)	309
FaqI	GGGAC	2 cut(s)	92, 169
FatI	CATG	1 cut(s)	307
FauI	CCCGC	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	333
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	3 cut(s)	45, 329, 349
GlaI	GCGC	3 cut(s)	30, 39, 221
GluI	GCNGC	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	3 cut(s)	125, 287, 323
HapII	CCGG	4 cut(s)	58, 168, 242, 345
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	3 cut(s)	31, 40, 222
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	311
Hin6I	GCGC	3 cut(s)	29, 38, 220
HinP1I	GCGC	3 cut(s)	29, 38, 220
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	2 cut(s)	80, 101
HpaII	CCGG	4 cut(s)	58, 168, 242, 345
Hpy166II	GTNNAC	2 cut(s)	163, 304
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	1 cut(s)	58
Hpy8I	GTNNAC	2 cut(s)	163, 304
Hpy99I	CGWCG	2 cut(s)	186, 302
HpyAV	CCTTC	2 cut(s)	142, 278
HpyCH4III	ACNGT	2 cut(s)	160, 182
HpyCH4IV	ACGT	2 cut(s)	225, 300
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 37, 46, 131, 247, 293, 329
HpySE526I	ACGT	2 cut(s)	225, 300
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	311
HspAI	GCGC	3 cut(s)	29, 38, 220
Kpn2I	TCCGGA	1 cut(s)	57
LmnI	GCTCC	2 cut(s)	186, 315
LpnPI	CCDG	3 cut(s)	71, 181, 255
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	3 cut(s)	45, 329, 349
MaeII	ACGT	2 cut(s)	225, 300
MboII	GAAGA	2 cut(s)	9, 79
MhlI	GDGCHC	1 cut(s)	320
MlyI	GAGTC	2 cut(s)	74, 110
MmeI	TCCRAC	2 cut(s)	108, 164
MnlI	CCTC	4 cut(s)	28, 98, 112, 115
MroI	TCCGGA	1 cut(s)	57
MspI	CCGG	4 cut(s)	58, 168, 242, 345
MspR9I	CCNGG	1 cut(s)	169
MvnI	CGCG	4 cut(s)	29, 31, 40, 273
MwoI	GCNNNNNNNGC	7 cut(s)	35, 37, 46, 131, 247, 293, 329
NciI	CCSGG	1 cut(s)	169
NheI	GCTAGC	1 cut(s)	328
NlaIII	CATG	1 cut(s)	311
NlaIV	GGNNCC	2 cut(s)	157, 188
NmeAIII	GCCGAG	3 cut(s)	263, 299, 349
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	334
PleI	GAGTC	2 cut(s)	74, 109
PmaCI	CACGTG	1 cut(s)	226
PmlI	CACGTG	1 cut(s)	226
PpsI	GAGTC	2 cut(s)	74, 109
Ppu21I	YACGTR	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	320
PspCI	CACGTG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	157, 188
PspPI	GGNCC	3 cut(s)	60, 156, 178
Rsr2I	CGGWCCG	1 cut(s)	178
RsrII	CGGWCCG	1 cut(s)	178
SacI	GAGCTC	1 cut(s)	320
SatI	GCNGC	1 cut(s)	333
Sau96I	GGNCC	3 cut(s)	60, 156, 178
SchI	GAGTC	2 cut(s)	74, 110
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	6 cut(s)	65, 90, 228, 303, 320, 330
SfaNI	GCATC	1 cut(s)	228
SinI	GGWCC	3 cut(s)	60, 156, 178
SsiI	CCGC	8 cut(s)	27, 76, 91, 134, 140, 176, 206, 260
SspMI	CTAG	3 cut(s)	45, 329, 349
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	2 cut(s)	160, 182
TaiI	ACGT	2 cut(s)	228, 303
TseI	GCWGC	1 cut(s)	332
TspGWI	ACGGA	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	3 cut(s)	60, 156, 178
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	3 cut(s)	45, 329, 349
ZraI	GACGTC	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.