Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014834

Physical Location & Seq

Genomic Coordinates Reverse (-)

20362890 .. 20364167

Gene Structure 1278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012597

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCTTCCCCAGCTGAAGTTGCTATCTCGGCTGCTCGCCTTCTGCAGTCCTATGTTCAAGCCAATCCTTCCCCTGTTCAGAGACATTCTCCTCACCAGATCAACATCAAACGCTGCCATCTGTCCCCTCCCTTCAGAAGCTCATCTTCCAACTCGACGCCCCAAACCTCTCCGTCTCTCACCTCTGCTTCATCTCCCAACAGTTGGTGCTTTTAAGTTCCAGGCCTTGAAGATTTGGCGGGACTCCAACCTCCGCTACGTGGAGTCCGTCAAGGCACACGAGGACGCCGTGAGTGCAGTGGCGGTGGCGAAGGACGGGACCGTCTACACCGAGTCTGCGGACCGTCGGAGCTGGGTGTGGGCGAGACCGCAAGACGAGAAGCGCCACGTGTTGGTGGCGACGCTGGAGAAGCACAAGTCGGCGGTCGTCCTTCGCGTCTCTCTCTGGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

151

Amino Acids

17.01

Weight (kDa)

10.28

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014834)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g07780 pycom12g13790 pycom15g04400
rosa_chinensis	RchiOBHm_Chr6g0254721
rosa_laevigata	RLG00000012597 RLG00000026348
rosa_multiflora	Rmu_sc0003880.1_g000037 Rmu_ssc0000116.1_g000020 Rmu_ssc0000357.1_g000003
rosa_roxburghii	Rroxscaffold_4G00311450
rosa_samantha	Rh2BG557500 Rh2DG003800 Rh3DG263600 Rh4BG141200 Rh5AG042400 Rh5DG042600 Rh6CG505700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AccB7I	CCANNNNNTGG	2 cut(s)	203, 391
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	1 cut(s)	435
AciI	CCGC	6 cut(s)	238, 253, 302, 338, 368, 422
AcuI	CTGAAG	2 cut(s)	35, 117
AcvI	CACGTG	1 cut(s)	388
AcyI	GRCGYC	2 cut(s)	157, 285
AfiI	CCNNNNNNNGG	3 cut(s)	203, 259, 391
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	2 cut(s)	58, 229
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	3 cut(s)	13, 140, 351
AluI	AGCT	3 cut(s)	13, 140, 351
Alw26I	GTCTC	4 cut(s)	75, 179, 358, 442
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	31, 113
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	2 cut(s)	318, 340
AsuHPI	GGTGA	2 cut(s)	85, 171
AvaII	GGWCC	2 cut(s)	318, 340
BauI	CACGAG	1 cut(s)	278
BbrPI	CACGTG	1 cut(s)	388
BbvI	GCAGC	2 cut(s)	18, 100
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	221
BcoDI	GTCTC	4 cut(s)	75, 179, 358, 442
BfmI	CTRYAG	2 cut(s)	43, 449
BfoI	RGCGCY	1 cut(s)	385
BisI	GCNGC	2 cut(s)	32, 114
BlsI	GCNGC	2 cut(s)	33, 115
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	2 cut(s)	318, 340
BmgT120I	GGNCC	2 cut(s)	318, 340
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	72, 104
BpmI	CTGGAG	1 cut(s)	425
BsaAI	YACGTR	2 cut(s)	259, 388
BsaBI	GATNNNNATC	1 cut(s)	103
BsaHI	GRCGYC	2 cut(s)	157, 285
BsaI	GGTCTC	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 259, 391
Bse8I	GATNNNNATC	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	221
BseJI	GATNNNNATC	1 cut(s)	103
BseLI	CCNNNNNNNGG	3 cut(s)	203, 259, 391
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	18, 100
BseYI	CCCAGC	2 cut(s)	9, 351
BsgI	GTGCAG	1 cut(s)	315
Bsh1236I	CGCG	1 cut(s)	435
Bsh1285I	CGRYCG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	224
BsiEI	CGRYCG	1 cut(s)	426
BslFI	GGGAC	3 cut(s)	108, 254, 331
BslI	CCNNNNNNNGG	3 cut(s)	203, 259, 391
BsmAI	GTCTC	4 cut(s)	75, 179, 358, 442
BsmBI	CGTCTC	2 cut(s)	179, 442
BsmFI	GGGAC	3 cut(s)	108, 254, 331
BsnI	GGCC	1 cut(s)	224
Bso31I	GGTCTC	1 cut(s)	358
Bsp143I	GATC	1 cut(s)	98
BspACI	CCGC	6 cut(s)	238, 253, 302, 338, 368, 422
BspANI	GGCC	1 cut(s)	224
BspFNI	CGCG	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	319
BspMAI	CTGCAG	1 cut(s)	47
BspTNI	GGTCTC	1 cut(s)	358
BssMI	GATC	1 cut(s)	98
BssNI	GRCGYC	2 cut(s)	157, 285
BssSI	CACGAG	1 cut(s)	278
Bst2BI	CACGAG	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	3 cut(s)	202, 322, 344
BstACI	GRCGYC	2 cut(s)	157, 285
BstBAI	YACGTR	2 cut(s)	259, 388
BstC8I	GCNNGC	1 cut(s)	36
BstFNI	CGCG	1 cut(s)	435
BstH2I	RGCGCY	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	1 cut(s)	101
BstMAI	GTCTC	4 cut(s)	75, 179, 358, 442
BstMBI	GATC	1 cut(s)	98
BstMCI	CGRYCG	1 cut(s)	426
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 19, 28, 293, 409
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	2 cut(s)	43, 449
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	2 cut(s)	18, 100
BsuRI	GGCC	1 cut(s)	224
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	36
CfoI	GCGC	1 cut(s)	384
Cfr13I	GGNCC	2 cut(s)	318, 340
CpoI	CGGWCCG	1 cut(s)	340
CseI	GACGC	4 cut(s)	165, 293, 409, 424
CspI	CGGWCCG	1 cut(s)	340
CviJI	RGCY	7 cut(s)	13, 31, 61, 140, 224, 351, 448
CviKI_1	RGCY	7 cut(s)	13, 31, 61, 140, 224, 351, 448
DpnI	GATC	1 cut(s)	100
DpnII	GATC	1 cut(s)	98
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
Eco147I	AGGCCT	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	358
Eco47I	GGWCC	2 cut(s)	318, 340
Eco57I	CTGAAG	2 cut(s)	35, 117
Eco72I	CACGTG	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	219
Esp3I	CGTCTC	2 cut(s)	179, 442
FaiI	YATR	1 cut(s)	53
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	3 cut(s)	108, 254, 331
FauI	CCCGC	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	2 cut(s)	32, 114
Fsp4HI	GCNGC	2 cut(s)	32, 114
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	2 cut(s)	32, 114
GsaI	CCCAGC	2 cut(s)	13, 355
GsuI	CTGGAG	1 cut(s)	425
HaeII	RGCGCY	1 cut(s)	385
HaeIII	GGCC	1 cut(s)	224
HgaI	GACGC	4 cut(s)	165, 293, 409, 424
HhaI	GCGC	1 cut(s)	384
Hin1I	GRCGYC	2 cut(s)	157, 285
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HinfI	GANTC	3 cut(s)	242, 263, 332
HphI	GGTGA	2 cut(s)	85, 171
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	3 cut(s)	80, 136, 348
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	3 cut(s)	159, 348, 403
HpyAV	CCTTC	5 cut(s)	49, 77, 141, 304, 440
HpyCH4III	ACNGT	3 cut(s)	202, 322, 344
HpyCH4IV	ACGT	2 cut(s)	258, 387
HpyCH4V	TGCA	2 cut(s)	45, 296
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 19, 28, 293, 409
HpySE526I	ACGT	2 cut(s)	258, 387
Hsp92I	GRCGYC	2 cut(s)	157, 285
HspAI	GCGC	1 cut(s)	382
Kzo9I	GATC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	348
LpnPI	CCDG	8 cut(s)	23, 86, 109, 206, 233, 337, 389, 430
Lsp1109I	GCAGC	2 cut(s)	18, 100
MaeII	ACGT	2 cut(s)	258, 387
MalI	GATC	1 cut(s)	100
MboI	GATC	1 cut(s)	98
MboII	GAAGA	2 cut(s)	137, 241
MlyI	GAGTC	3 cut(s)	236, 272, 341
MmeI	TCCRAC	3 cut(s)	173, 270, 326
MnlI	CCTC	6 cut(s)	101, 137, 177, 192, 260, 274
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	13
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	5 cut(s)	10, 19, 28, 293, 409
NdeII	GATC	1 cut(s)	98
NlaIV	GGNNCC	1 cut(s)	319
NmeAIII	GCCGAG	1 cut(s)	7
PceI	AGGCCT	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	3 cut(s)	264, 285, 432
PflMI	CCANNNNNTGG	2 cut(s)	203, 391
PkrI	GCNGC	2 cut(s)	33, 115
PleI	GAGTC	3 cut(s)	236, 271, 340
PmaCI	CACGTG	1 cut(s)	388
PmlI	CACGTG	1 cut(s)	388
PpsI	GAGTC	3 cut(s)	236, 271, 340
Ppu21I	YACGTR	2 cut(s)	259, 388
Psp6I	CCWGG	1 cut(s)	219
PspCI	CACGTG	1 cut(s)	388
PspFI	CCCAGC	2 cut(s)	9, 351
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	319
PspPI	GGNCC	2 cut(s)	318, 340
PstI	CTGCAG	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	13
Rsr2I	CGGWCCG	1 cut(s)	340
RsrII	CGGWCCG	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	32, 114
Sau3AI	GATC	1 cut(s)	98
Sau96I	GGNCC	2 cut(s)	318, 340
SchI	GAGTC	3 cut(s)	236, 272, 341
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	8 cut(s)	15, 142, 169, 184, 252, 261, 353, 390
SfcI	CTRYAG	2 cut(s)	43, 449
SinI	GGWCC	2 cut(s)	318, 340
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	6 cut(s)	238, 253, 302, 338, 368, 422
StuI	AGGCCT	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	202, 322, 344
TaiI	ACGT	2 cut(s)	261, 390
TaqI	TCGA	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	2 cut(s)	31, 113
TspDTI	ATGAA	1 cut(s)	179
TspGWI	ACGGA	2 cut(s)	161, 256
TspRI	CASTG	1 cut(s)	303
Van91I	CCANNNNNTGG	2 cut(s)	203, 391
VpaK11BI	GGWCC	2 cut(s)	318, 340
XmiI	GTMKAC	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.