Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000357.1

Orthogroup ID

OG0014834

Physical Location & Seq

Genomic Coordinates Reverse (-)

6319 .. 6768

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000357.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ctgcagcaccagcctccattccaacctctccctccagacgctgccatctgtcccctcccttcagaagctcatctcccaactcgacgccccaaacctctccatctctcacctctgcttcatctcccaacagtcggtgcttttaagttccagaccttgaagatttggcgggactccaacctccactgcgtggagtccgtcaaggcgcacgaggacgtcgtgagcgcggttgcaatggcgaaggatgggaccttctacactgggtcggcggaccgtcggatccgggtgtgggcgagaccacaagacgagaagcgccacgtgttggtggcgacgctggagaagaacaagtcggcgatcgtccttcgcgtctttctcttgccgtcaatggctgacgtcagccatgtggggagctcgggccgagctggcaacaaacttgactgggtgggaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

149

Amino Acids

16.52

Weight (kDa)

9.79

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014834)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g07780 pycom12g13790 pycom15g04400
rosa_chinensis	RchiOBHm_Chr6g0254721
rosa_laevigata	RLG00000012597 RLG00000026348
rosa_multiflora	Rmu_sc0003880.1_g000037 Rmu_ssc0000116.1_g000020 Rmu_ssc0000357.1_g000003
rosa_roxburghii	Rroxscaffold_4G00311450
rosa_samantha	Rh2BG557500 Rh2DG003800 Rh3DG263600 Rh4BG141200 Rh5AG042400 Rh5DG042600 Rh6CG505700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	216, 393
AccB7I	CCANNNNNTGG	2 cut(s)	187, 319
AccII	CGCG	2 cut(s)	224, 363
AciI	CCGC	3 cut(s)	166, 224, 266
AclWI	GGATC	2 cut(s)	271, 284
AcuI	CTGAAG	1 cut(s)	45
AcvI	CACGTG	1 cut(s)	316
AcyI	GRCGYC	3 cut(s)	85, 213, 390
AdeI	CACNNNGTG	1 cut(s)	187
AfiI	CCNNNNNNNGG	4 cut(s)	131, 187, 286, 319
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	157
AluBI	AGCT	3 cut(s)	68, 408, 419
AluI	AGCT	3 cut(s)	68, 408, 419
Alw21I	GWGCWC	1 cut(s)	410
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	2 cut(s)	271, 284
AlwNI	CAGNNNCTG	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	409
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	2 cut(s)	4, 41
AspLEI	GCGC	3 cut(s)	205, 224, 312
AspS9I	GGNCC	3 cut(s)	246, 268, 412
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	99
AvaI	CYCGRG	1 cut(s)	409
AvaII	GGWCC	2 cut(s)	246, 268
BamHI	GGATCC	1 cut(s)	276
BanII	GRGCYC	1 cut(s)	410
BauI	CACGAG	1 cut(s)	206
BbrPI	CACGTG	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	16, 28
BccI	CCATC	3 cut(s)	53, 108, 236
BceAI	ACGGC	1 cut(s)	361
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	286
BfmI	CTRYAG	1 cut(s)	2
BfoI	RGCGCY	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	420
BisI	GCNGC	2 cut(s)	5, 42
BlsI	GCNGC	2 cut(s)	6, 43
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	2 cut(s)	246, 268
BmeT110I	CYCGRG	1 cut(s)	409
BmgT120I	GGNCC	3 cut(s)	246, 268, 412
BmiI	GGNNCC	2 cut(s)	247, 278
BmrFI	CCNGG	1 cut(s)	281
BmrI	ACTGGG	2 cut(s)	267, 445
BmuI	ACTGGG	2 cut(s)	267, 445
BpmI	CTGGAG	2 cut(s)	18, 353
BpuMI	CCSGG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	316
BsaHI	GRCGYC	3 cut(s)	85, 213, 390
BsaI	GGTCTC	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 187, 286, 319
Bse1I	ACTGG	2 cut(s)	262, 440
Bse3DI	GCAATG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	4 cut(s)	131, 187, 286, 319
BseMI	GCAATG	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	262, 440
BseXI	GCAGC	2 cut(s)	16, 28
Bsh1236I	CGCG	2 cut(s)	224, 363
Bsh1285I	CGRYCG	1 cut(s)	354
BshFI	GGCC	1 cut(s)	414
BsiEI	CGRYCG	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	410
BsiHKCI	CYCGRG	1 cut(s)	409
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	3 cut(s)	36, 182, 259
BslI	CCNNNNNNNGG	4 cut(s)	131, 187, 286, 319
BsmAI	GTCTC	1 cut(s)	286
BsmFI	GGGAC	3 cut(s)	36, 182, 259
BsnI	GGCC	1 cut(s)	414
Bso31I	GGTCTC	1 cut(s)	286
BsoBI	CYCGRG	1 cut(s)	409
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp143I	GATC	2 cut(s)	276, 351
BspACI	CCGC	3 cut(s)	166, 224, 266
BspANI	GGCC	1 cut(s)	414
BspFNI	CGCG	2 cut(s)	224, 363
BspLI	GGNNCC	2 cut(s)	247, 278
BspMAI	CTGCAG	1 cut(s)	6
BspPI	GGATC	2 cut(s)	271, 284
BspTNI	GGTCTC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	262, 440
BssMI	GATC	2 cut(s)	276, 351
BssNI	GRCGYC	3 cut(s)	85, 213, 390
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
Bst4CI	ACNGT	2 cut(s)	130, 272
BstACI	GRCGYC	3 cut(s)	85, 213, 390
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	421
BstF5I	GGATG	1 cut(s)	247
BstFNI	CGCG	2 cut(s)	224, 363
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	3 cut(s)	205, 224, 312
BstKTI	GATC	2 cut(s)	279, 354
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	2 cut(s)	276, 351
BstMCI	CGRYCG	1 cut(s)	354
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 420
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	2
BstUI	CGCG	2 cut(s)	224, 363
BstV1I	GCAGC	2 cut(s)	16, 28
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	247
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	181, 255
Cac8I	GCNNGC	1 cut(s)	421
CaiI	CAGNNNCTG	1 cut(s)	41
CfoI	GCGC	3 cut(s)	205, 224, 312
Cfr13I	GGNCC	3 cut(s)	246, 268, 412
CpoI	CGGWCCG	1 cut(s)	268
CseI	GACGC	4 cut(s)	47, 93, 337, 352
CspI	CGGWCCG	1 cut(s)	268
CviAII	CATG	1 cut(s)	398
CviJI	RGCY	7 cut(s)	13, 68, 386, 396, 408, 414, 419
CviKI_1	RGCY	7 cut(s)	13, 68, 386, 396, 408, 414, 419
DpnI	GATC	2 cut(s)	278, 353
DpnII	GATC	2 cut(s)	276, 351
DraIII	CACNNNGTG	1 cut(s)	187
EciI	GGCGGA	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	286
Eco47I	GGWCC	2 cut(s)	246, 268
Eco53kI	GAGCTC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	45
Eco72I	CACGTG	1 cut(s)	316
Eco88I	CYCGRG	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	410
FaeI	CATG	1 cut(s)	401
FaiI	YATR	1 cut(s)	399
FaqI	GGGAC	3 cut(s)	36, 182, 259
FatI	CATG	1 cut(s)	397
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	5, 42
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	2 cut(s)	5, 42
GlaI	GCGC	3 cut(s)	204, 223, 311
GluI	GCNGC	2 cut(s)	5, 42
GsuI	CTGGAG	2 cut(s)	18, 353
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	1 cut(s)	280
HgaI	GACGC	4 cut(s)	47, 93, 337, 352
HhaI	GCGC	3 cut(s)	205, 224, 312
Hin1I	GRCGYC	3 cut(s)	85, 213, 390
Hin1II	CATG	1 cut(s)	401
Hin6I	GCGC	3 cut(s)	203, 222, 310
HinP1I	GCGC	3 cut(s)	203, 222, 310
HinfI	GANTC	2 cut(s)	170, 191
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	1 cut(s)	99
Hpy188I	TCNGA	2 cut(s)	64, 276
Hpy188III	TCNNGA	3 cut(s)	35, 148, 217
Hpy99I	CGWCG	4 cut(s)	87, 218, 276, 331
HpyAV	CCTTC	4 cut(s)	69, 232, 259, 368
HpyCH4III	ACNGT	2 cut(s)	130, 272
HpyCH4IV	ACGT	3 cut(s)	213, 315, 390
HpyCH4V	TGCA	2 cut(s)	4, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 420
HpySE526I	ACGT	3 cut(s)	213, 315, 390
Hsp92I	GRCGYC	3 cut(s)	85, 213, 390
Hsp92II	CATG	1 cut(s)	401
HspAI	GCGC	3 cut(s)	203, 222, 310
Kzo9I	GATC	2 cut(s)	276, 351
LmnI	GCTCC	1 cut(s)	405
LpnPI	CCDG	8 cut(s)	23, 48, 161, 243, 293, 317, 405, 421
Lsp1109I	GCAGC	2 cut(s)	16, 28
MaeII	ACGT	3 cut(s)	213, 315, 390
MalI	GATC	2 cut(s)	278, 353
MboI	GATC	2 cut(s)	276, 351
MboII	GAAGA	2 cut(s)	169, 349
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	410
MlyI	GAGTC	2 cut(s)	164, 200
MmeI	TCCRAC	3 cut(s)	46, 198, 254
MnlI	CCTC	8 cut(s)	24, 36, 42, 65, 105, 120, 188, 202
MseI	TTAA	1 cut(s)	141
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	281
MvnI	CGCG	2 cut(s)	224, 363
MwoI	GCNNNNNNNGC	2 cut(s)	10, 420
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	2 cut(s)	276, 351
NlaIII	CATG	1 cut(s)	401
NlaIV	GGNNCC	2 cut(s)	247, 278
NmeAIII	GCCGAG	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 360
PflMI	CCANNNNNTGG	2 cut(s)	187, 319
PkrI	GCNGC	2 cut(s)	6, 43
Ple19I	CGATCG	1 cut(s)	354
PleI	GAGTC	2 cut(s)	164, 199
PmaCI	CACGTG	1 cut(s)	316
PmlI	CACGTG	1 cut(s)	316
PpsI	GAGTC	2 cut(s)	164, 199
Ppu21I	YACGTR	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	410
Psp5II	RGGWCCY	1 cut(s)	246
PspCI	CACGTG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	247, 278
PspPI	GGNCC	3 cut(s)	246, 268, 412
PspPPI	RGGWCCY	1 cut(s)	246
PstI	CTGCAG	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	276
PvuI	CGATCG	1 cut(s)	354
Rsr2I	CGGWCCG	1 cut(s)	268
RsrII	CGGWCCG	1 cut(s)	268
SacI	GAGCTC	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	5, 42
Sau3AI	GATC	2 cut(s)	276, 351
Sau96I	GGNCC	3 cut(s)	246, 268, 412
SchI	GAGTC	2 cut(s)	164, 200
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	410
SfcI	CTRYAG	1 cut(s)	2
SinI	GGWCC	2 cut(s)	246, 268
SsiI	CCGC	3 cut(s)	166, 224, 266
SstI	GAGCTC	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	130, 272
TaiI	ACGT	3 cut(s)	216, 318, 393
TaqI	TCGA	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	2 cut(s)	188, 262
TseI	GCWGC	2 cut(s)	4, 41
TspDTI	ATGAA	1 cut(s)	107
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	2 cut(s)	188, 262
Van91I	CCANNNNNTGG	2 cut(s)	187, 319
VpaK11BI	GGWCC	2 cut(s)	246, 268
ZraI	GACGTC	2 cut(s)	214, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.